pycom04g03850
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
3449181 .. 3453812
4632 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03850.13

Sequence Viewer

Length: 1500 bp
ATGCAGCTGAACATTAAGGAAGAATCCGATGAGTTCAGATTACCAACCCAAGAGGAACTGGAAGAAGAGGCACATCGGCCTCCTGATCTTCCAAATCTCCAGAGGAGGATAAAAGAGATTGTTCGAGTGCTCTCAAACTTCAAGGCTTTGAGGCAAGATGGGGCACCAAGGAAGGATTATGTTGAGCAGCTTAAGAGGGATTTAATTTCATACTATGGCTACAATAGCTTTTTAATTGGGGCTTTAGTAGAGACACGAAGGAGGGATTTGGCAGATGTTTTAATCAACAGAGGAGTAAACCTTGCTCCCTTAAGCGAGTGGTCGAAAGTTGGATTGGTTGTGTATGATTTTCAAGTTCCAATTGGTGCCACTCCTGAATATATGGCTGGTTATTACATGCTGCAAAGTGCAAGCTCCTTTTTGCCTGTCATGGCCCTTGCTCCTCAAGAGAAGGAACGAATTGTTGATATGGCCGCTGCACCTGGTGGTAAAACAACTTATATTGCCGCTCTAATGAAAAATAGTGGATTAATTTTTGCCAATGAAATGAAGGAGCCAAGGCTCAAGTCACTCACTGCTAATTTGCACCGCATGGGGGTGACAAACACAGTAGTTTGTAACTATGATGGCAAAGAGCTCCCTAAGGTTCTGGGAGTCAACGCAGTTGATAGAGTTCTATTAGATGCTCCTTGCAGTGGGACAGGGGTTATATCTAAAGATGAGTCTGTTAAAACTTCTAAAAGCTCTGATGAAATTCATAAATGTGCTCACCTGCAGAAGCAACTGATACTTGCCGCAATTGACATGGTGGATGCAAATTCAAAATCCGGGGGATACATTGTGTACTCCACGTGCTCCATTTTGGTTGCTGAGAATGAAGCAGTAATTGACTATGCACTCAAAAAGAGAAATGTTAAACTTGTCCCATGTGGACTTAGCTTTGGGGTTAAAGGGTTTGTCCGGTTCAGGGAACAGCGGTTTCACCCATCATTAGAGAACACGAGGCGATTTTACCCTCATGTTCACAATATGGATGGCTTTTTTGTGGCGAAGCTGCAAAAGATGAGCAATTTGAAGCAATCGGCAGAAAAGTCTGAACTCGGTGAAACAGTGGAGAAAGCCCAAAACATGACTGAAGAAGAGAATGCTGAGGAAGATGACCAACAGATGTTGACAGAGGATGATACTAAAATTGAAAATAAGGTTTTGCAAGAAGAGGTTAGCGAAAATGGGAAACTAAAATCTCCAGGCACTACCAACCAAAAGAAGGAATCCCCCGTCACTGTGAAAAGGAGGAAGGGCGCTGGGTTAAGGTCGAAGGATATGAATTTCCCTGCCTTTTTCTCTCATCTGAATGGGAAAACCCCCTTGGAACAAAAACAAGAACAGAAAAAGAAATACCCGAAACTAAAGCACCCTCCTAGAGAGGAAATATCAAAAGCCAGGGAAGAGAAGAGGAGAGCTGTCAGGGAAGGAAAATCTTCCAGCAACAAAGAATGA

Protein Analysis

500

Amino Acids

56.31

Weight (kDa)

8.91

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 780
Acc36I ACCTGC 1 cut(s) 780
AccB1I GGYRCC 2 cut(s) 163, 365
AccBSI CCGCTC 1 cut(s) 509
AciI CCGC 5 cut(s) 474, 507, 589, 795, 976
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 3 cut(s) 753, 817, 1327
AcuI CTGAAG 1 cut(s) 1155
AcvI CACGTG 1 cut(s) 852
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 4 cut(s) 595, 695, 967, 1267
AflII CTTAAG 2 cut(s) 191, 310
AgsI TTSAA 5 cut(s) 142, 353, 822, 1075, 1196
AjnI CCWGG 3 cut(s) 481, 1246, 1442
AjuI GAANNNNNNNTTGG 4 cut(s) 317, 349, 1352, 1384
AluBI AGCT 9 cut(s) 7, 190, 228, 414, 637, 744, 939, 1054, 1463
AluI AGCT 9 cut(s) 7, 190, 228, 414, 637, 744, 939, 1054, 1463
Alw21I GWGCWC 4 cut(s) 132, 639, 769, 857
Alw26I GTCTC 1 cut(s) 245
AoxI GGCC 3 cut(s) 77, 432, 471
ApeKI GCWGC 5 cut(s) 4, 187, 400, 476, 1054
ApoI RAATTY 3 cut(s) 753, 817, 1327
AseI ATTAAT 1 cut(s) 530
Asp700I GAANNNNTTC 1 cut(s) 1480
AspLEI GCGC 1 cut(s) 1304
AspS9I GGNCC 1 cut(s) 433
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 4 cut(s) 610, 761, 974, 1115
AxyI CCTNAGG 1 cut(s) 642
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 2 cut(s) 163, 365
BanII GRGCYC 1 cut(s) 639
BauI CACGAG 1 cut(s) 1000
BbrPI CACGTG 1 cut(s) 852
Bbv12I GWGCWC 4 cut(s) 132, 639, 769, 857
BbvCI CCTCAGC 1 cut(s) 1149
BbvI GCAGC 5 cut(s) 16, 199, 387, 463, 1041
BccI CCATC 4 cut(s) 152, 620, 994, 1028
BciT130I CCWGG 3 cut(s) 483, 1248, 1444
BciVI GTATCC 1 cut(s) 827
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 1422
BfmI CTRYAG 1 cut(s) 773
BfoI RGCGCY 1 cut(s) 1305
BfrI CTTAAG 2 cut(s) 191, 310
BfuAI ACCTGC 1 cut(s) 780
BfuI GTATCC 1 cut(s) 827
BisI GCNGC 8 cut(s) 5, 188, 401, 474, 477, 507, 795, 1055
BlsI GCNGC 8 cut(s) 6, 189, 402, 475, 478, 508, 796, 1056
Bme1390I CCNGG 4 cut(s) 483, 829, 1248, 1444
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 3 cut(s) 165, 367, 555
BmrFI CCNGG 4 cut(s) 483, 829, 1248, 1444
BmsI GCATC 2 cut(s) 673, 802
BpmI CTGGAG 2 cut(s) 83, 1230
Bpu10I CCTNAGC 1 cut(s) 1149
BpuEI CTTGAG 2 cut(s) 429, 548
BpuMI CCSGG 1 cut(s) 829
BsaAI YACGTR 1 cut(s) 852
BsaJI CCNNGG 5 cut(s) 167, 557, 828, 1368, 1443
BsaWI WCCGGW 1 cut(s) 960
Bsc4I CCNNNNNNNGG 4 cut(s) 595, 695, 967, 1267
Bse1I ACTGG 1 cut(s) 63
Bse21I CCTNAGG 1 cut(s) 642
BseBI CCWGG 3 cut(s) 483, 1248, 1444
BseDI CCNNGG 5 cut(s) 167, 557, 828, 1368, 1443
BseGI GGATG 3 cut(s) 817, 1039, 1186
BseLI CCNNNNNNNGG 4 cut(s) 595, 695, 967, 1267
BseMII CTCAG 2 cut(s) 861, 1140
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 4 cut(s) 118, 306, 432, 1471
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 5 cut(s) 16, 199, 387, 463, 1041
BseYI CCCAGC 1 cut(s) 1304
BsgI GTGCAG 1 cut(s) 462
BshFI GGCC 3 cut(s) 79, 434, 473
BshNI GGYRCC 2 cut(s) 163, 365
BsiHKAI GWGCWC 4 cut(s) 132, 639, 769, 857
BsiSI CCGG 2 cut(s) 828, 961
BslFI GGGAC 2 cut(s) 712, 908
BslI CCNNNNNNNGG 4 cut(s) 595, 695, 967, 1267
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 712, 908
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 3 cut(s) 79, 434, 473
Bsp1286I GDGCHC 5 cut(s) 132, 166, 639, 769, 857
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 5 cut(s) 474, 507, 589, 795, 976
BspANI GGCC 3 cut(s) 79, 434, 473
BspCNI CTCAG 2 cut(s) 862, 1141
BspLI GGNNCC 3 cut(s) 165, 367, 555
BspMAI CTGCAG 1 cut(s) 777
BspMI ACCTGC 1 cut(s) 780
BspT107I GGYRCC 2 cut(s) 163, 365
BspTI CTTAAG 2 cut(s) 191, 310
BsrBI CCGCTC 1 cut(s) 509
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 5 cut(s) 167, 557, 828, 1368, 1443
BssMI GATC 1 cut(s) 85
BssSI CACGAG 1 cut(s) 1000
BssT1I CCWWGG 3 cut(s) 167, 557, 1368
Bst2BI CACGAG 1 cut(s) 1000
Bst2UI CCWGG 3 cut(s) 483, 1248, 1444
Bst4CI ACNGT 3 cut(s) 610, 1111, 1285
Bst6I CTCTTC 5 cut(s) 60, 1134, 1209, 1443, 1448
BstAFI CTTAAG 2 cut(s) 191, 310
BstBAI YACGTR 1 cut(s) 852
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 4 cut(s) 642, 870, 935, 1149
BstF5I GGATG 3 cut(s) 817, 1039, 1186
BstH2I RGCGCY 1 cut(s) 1305
BstHHI GCGC 1 cut(s) 1304
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 3 cut(s) 483, 1248, 1444
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 4 cut(s) 481, 827, 1246, 1442
BstSFI CTRYAG 1 cut(s) 773
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 5 cut(s) 16, 199, 387, 463, 1041
Bsu36I CCTNAGG 1 cut(s) 642
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 3 cut(s) 79, 434, 473
BtsCI GGATG 3 cut(s) 817, 1039, 1186
BtsI GCAGTG 2 cut(s) 573, 700
BtsIMutI CAGTG 4 cut(s) 573, 700, 1116, 1281
BveI ACCTGC 1 cut(s) 780
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 1 cut(s) 1304
Cfr13I GGNCC 1 cut(s) 433
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 1 cut(s) 844
CviAII CATG 7 cut(s) 397, 430, 592, 805, 927, 1019, 1129
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 4 cut(s) 642, 870, 935, 1149
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DraIII CACNNNGTG 1 cut(s) 485
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 5 cut(s) 60, 1134, 1209, 1443, 1448
EarI CTCTTC 5 cut(s) 60, 1134, 1209, 1443, 1448
Ecl136II GAGCTC 1 cut(s) 637
Eco130I CCWWGG 3 cut(s) 167, 557, 1368
Eco24I GRGCYC 1 cut(s) 639
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 1155
Eco72I CACGTG 1 cut(s) 852
Eco81I CCTNAGG 1 cut(s) 642
EcoICRI GAGCTC 1 cut(s) 637
EcoRII CCWGG 3 cut(s) 481, 1246, 1442
EcoT14I CCWWGG 3 cut(s) 167, 557, 1368
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 3 cut(s) 167, 557, 1368
FaeI CATG 7 cut(s) 400, 433, 595, 808, 930, 1022, 1132
FaqI GGGAC 2 cut(s) 712, 908
FatI CATG 7 cut(s) 396, 429, 591, 804, 926, 1018, 1128
Fnu4HI GCNGC 8 cut(s) 5, 188, 401, 474, 477, 507, 795, 1055
FokI GGATG 3 cut(s) 824, 1046, 1193
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 8 cut(s) 5, 188, 401, 474, 477, 507, 795, 1055
FspBI CTAG 1 cut(s) 1422
GlaI GCGC 1 cut(s) 1303
GluI GCNGC 8 cut(s) 5, 188, 401, 474, 477, 507, 795, 1055
GsaI CCCAGC 1 cut(s) 1308
GsuI CTGGAG 2 cut(s) 83, 1230
HaeII RGCGCY 1 cut(s) 1305
HaeIII GGCC 3 cut(s) 79, 434, 473
HapII CCGG 2 cut(s) 828, 961
HhaI GCGC 1 cut(s) 1304
Hin1II CATG 7 cut(s) 400, 433, 595, 808, 930, 1022, 1132
Hin6I GCGC 1 cut(s) 1302
HinP1I GCGC 1 cut(s) 1302
HincII GTYRAC 2 cut(s) 658, 1173
HindII GTYRAC 2 cut(s) 658, 1173
HinfI GANTC 4 cut(s) 23, 654, 722, 1271
HpaII CCGG 2 cut(s) 828, 961
HphI GGTGA 4 cut(s) 610, 761, 974, 1115
Hpy166II GTNNAC 6 cut(s) 298, 658, 844, 932, 1024, 1173
Hpy188I TCNGA 5 cut(s) 28, 38, 748, 1096, 1353
Hpy188III TCNNGA 4 cut(s) 83, 100, 374, 446
Hpy8I GTNNAC 6 cut(s) 298, 658, 844, 932, 1024, 1173
HpyAV CCTTC 8 cut(s) 166, 252, 445, 544, 1261, 1291, 1312, 1466
HpyCH4III ACNGT 3 cut(s) 610, 1111, 1285
HpyCH4IV ACGT 1 cut(s) 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 4 cut(s) 642, 870, 935, 1149
HpySE526I ACGT 1 cut(s) 851
Hsp92II CATG 7 cut(s) 400, 433, 595, 808, 930, 1022, 1132
HspAI GCGC 1 cut(s) 1302
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 7 cut(s) 310, 419, 445, 553, 642, 691, 860
Lsp1109I GCAGC 5 cut(s) 16, 199, 387, 463, 1041
LweI GCATC 2 cut(s) 673, 802
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 1 cut(s) 1422
MaeII ACGT 1 cut(s) 851
MaeIII GTNAC 4 cut(s) 567, 598, 617, 1279
MalI GATC 1 cut(s) 87
MbiI CCGCTC 1 cut(s) 509
MboI GATC 1 cut(s) 85
MfeI CAATTG 2 cut(s) 360, 798
MhlI GDGCHC 5 cut(s) 132, 166, 639, 769, 857
MlyI GAGTC 2 cut(s) 663, 731
MmeI TCCRAC 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 1480
MslI CAYNNNNRTG 3 cut(s) 596, 762, 1353
MspA1I CMGCKG 3 cut(s) 7, 476, 976
MspCI CTTAAG 2 cut(s) 191, 310
MspI CCGG 2 cut(s) 828, 961
MspR9I CCNGG 4 cut(s) 483, 829, 1248, 1444
MunI CAATTG 2 cut(s) 360, 798
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 3 cut(s) 483, 1248, 1444
MwoI GCNNNNNNNGC 1 cut(s) 225
NciI CCSGG 1 cut(s) 829
NdeII GATC 1 cut(s) 85
NlaIII CATG 7 cut(s) 400, 433, 595, 808, 930, 1022, 1132
NlaIV GGNNCC 3 cut(s) 165, 367, 555
NmuCI GTSAC 3 cut(s) 567, 598, 1279
NspI RCATGY 1 cut(s) 400
PaqCI CACCTGC 1 cut(s) 780
PctI GAATGC 1 cut(s) 1150
PdmI GAANNNNTTC 1 cut(s) 1480
PfeI GAWTC 2 cut(s) 23, 1271
PkrI GCNGC 8 cut(s) 6, 189, 402, 475, 478, 508, 796, 1056
PleI GAGTC 2 cut(s) 662, 730
PmaCI CACGTG 1 cut(s) 852
PmlI CACGTG 1 cut(s) 852
PpsI GAGTC 2 cut(s) 662, 730
Ppu21I YACGTR 1 cut(s) 852
PshBI ATTAAT 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 3 cut(s) 481, 1246, 1442
PspCI CACGTG 1 cut(s) 852
PspFI CCCAGC 1 cut(s) 1304
PspGI CCWGG 3 cut(s) 481, 1246, 1442
PspN4I GGNNCC 3 cut(s) 165, 367, 555
PspPI GGNCC 1 cut(s) 433
PstI CTGCAG 1 cut(s) 777
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
RseI CAYNNNNRTG 3 cut(s) 596, 762, 1353
SacI GAGCTC 1 cut(s) 639
SatI GCNGC 8 cut(s) 5, 188, 401, 474, 477, 507, 795, 1055
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 2 cut(s) 663, 731
ScrFI CCNGG 4 cut(s) 483, 829, 1248, 1444
SduI GDGCHC 5 cut(s) 132, 166, 639, 769, 857
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 2 cut(s) 673, 802
SfcI CTRYAG 1 cut(s) 773
SmiMI CAYNNNNRTG 3 cut(s) 596, 762, 1353
SmlI CTYRAG 4 cut(s) 191, 310, 444, 563
SmoI CTYRAG 4 cut(s) 191, 310, 444, 563
SsiI CCGC 5 cut(s) 474, 507, 589, 795, 976
SspMI CTAG 1 cut(s) 1422
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 4 cut(s) 481, 827, 1246, 1442
StyI CCWWGG 3 cut(s) 167, 557, 1368
TaaI ACNGT 3 cut(s) 610, 1111, 1285
TaiI ACGT 1 cut(s) 854
TaqI TCGA 3 cut(s) 124, 323, 1316
TatI WGTACW 1 cut(s) 843
TauI GCSGC 3 cut(s) 476, 509, 797
TfiI GAWTC 2 cut(s) 23, 1271
TscAI CASTG 4 cut(s) 580, 700, 1116, 1288
TseFI GTSAC 3 cut(s) 567, 598, 1279
TseI GCWGC 5 cut(s) 4, 187, 400, 476, 1054
Tsp45I GTSAC 3 cut(s) 567, 598, 1279
TspDTI ATGAA 8 cut(s) 198, 530, 558, 563, 746, 765, 891, 1340
TspRI CASTG 4 cut(s) 580, 700, 1116, 1288
Vha464I CTTAAG 2 cut(s) 191, 310
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 3 cut(s) 753, 817, 1327
XceI RCATGY 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 1480
XspI CTAG 1 cut(s) 1422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.