Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007433

Physical Location & Seq

Genomic Coordinates Reverse (-)

34024347 .. 34025320

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008644

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGCACCTCTGCGCTTAACAAGAGAAAGGGAGCAAAACCCCGAAAGGCTTCGCCCAAGAAGAAGCAAAAGAAGGAGCCTTTCACAGCCAAAAACCCAAAGAAGCGCAAGATTGTTCAAGTTCCCGAACCTTCTGACAAAGAAGAAGAAGTAGAGGGCCTTGAAGAGTTTGATGTAGGAGATGAGGAAGGATCTGGTTCAGATAGTGACACTGATATTTTTGGTGGCGATGATCCCCTCCAAGATGATGATGATGATGACGACTCCCTCCCAGGAATTGATGAAGATGAAGACGAAGATGAAGAGAAAGGTTCTTCGGATTCGGATTCGGATTCGGATTCCGACTCGGGTGATATAGAGAAGAAATCAAGGCTCATTGACCAAAAAACGCTGGAGGAAGAAGAAGAAGGTAGAAAGGAACTGGAATTAAATATCAAGGATGAATCTGATGAGTTCAGATTACCAACTAAGCAGGAACTCGAACAACAGGCGCATCAACCTCCTGATCTTTCACACCTTCAGAGGAGGATAAAAGAGATTGATCGAGTGCTCTCAAATTTCAAGGCATTAAGGCAAGAGGGGGCGTCAAGGAAAGATTATGTTGAACAGCTTAAGAGAGATTTAAGCTCATACTATGGCTACAAAGACTTTTTGATTGGAGCTTTAGTAGAGGTGACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000154 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008284 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009966 GO:0009987 GO:0010467 GO:0010646 GO:0016043 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042127 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0065003 GO:0065007 GO:0070013 GO:0070475 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F Methyltr_RsmF_N

Protein Analysis

228

Amino Acids

25.72

Weight (kDa)

4.47

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26600 AT4G26600 AT4G26600 AT4G26600 AT4G26600 AT4G26600 AT4G26600 AT4G26600
fragaria_vesca	FvH4_4g11570 FvH4_4g11570
malus_domestica	MD04G1044800.v1.1
prunus_persica	Prupe.8G036800_v2.0.a1 Prupe.8G036800_v2.0.a1
pyrus_communis	pycom04g03850
rosa_chinensis	RchiOBHm_Chr4g0408681
rosa_laevigata	RLG00000008641 RLG00000008644
rosa_multiflora	Rmu_sc0002856.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353050
rosa_rugosa	Rorug04G0086600
rosa_samantha	Rh4BG148300 Rh4CG159000 Rh4DG143900
rosa_wichuraiana	Rw4G012220 Rw4G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	199, 227
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	584
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	4 cut(s)	119, 164, 562, 605
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	610, 627, 662
AluI	AGCT	3 cut(s)	610, 627, 662
Alw21I	GWGCWC	1 cut(s)	552
AlwI	GGATC	2 cut(s)	199, 227
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	556
Asp700I	GAANNNNTTC	1 cut(s)	49
AspLEI	GCGC	3 cut(s)	16, 108, 493
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	552
BciT130I	CCWGG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	611
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	7, 78
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	1 cut(s)	8
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	346
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	8, 552
Bsp143I	GATC	4 cut(s)	191, 232, 505, 541
BspANI	GGCC	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	7, 78
BspPI	GGATC	2 cut(s)	199, 227
BspT107I	GGYRCC	1 cut(s)	5
BspTI	CTTAAG	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	4 cut(s)	191, 232, 505, 541
BssNI	GRCGYC	1 cut(s)	584
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	159, 297
BstACI	GRCGYC	1 cut(s)	584
BstAFI	CTTAAG	1 cut(s)	611
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	445
BstHHI	GCGC	3 cut(s)	16, 108, 493
BstKTI	GATC	4 cut(s)	194, 235, 508, 544
BstMBI	GATC	4 cut(s)	191, 232, 505, 541
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	210
CfoI	GCGC	3 cut(s)	16, 108, 493
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	573
CviJI	RGCY	9 cut(s)	50, 79, 89, 159, 373, 610, 627, 639, 662
CviKI_1	RGCY	9 cut(s)	50, 79, 89, 159, 373, 610, 627, 639, 662
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	4 cut(s)	193, 234, 507, 543
DpnII	GATC	4 cut(s)	191, 232, 505, 541
Eam1104I	CTCTTC	2 cut(s)	159, 297
EarI	CTCTTC	2 cut(s)	159, 297
Eco57I	CTGAAG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	271
FaiI	YATR	4 cut(s)	356, 600, 631, 636
FokI	GGATG	1 cut(s)	452
GlaI	GCGC	3 cut(s)	15, 107, 492
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	159
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	3 cut(s)	16, 108, 493
Hin1I	GRCGYC	1 cut(s)	584
Hin6I	GCGC	3 cut(s)	14, 106, 491
HinP1I	GCGC	3 cut(s)	14, 106, 491
HinfI	GANTC	7 cut(s)	263, 320, 326, 332, 338, 344, 443
HphI	GGTGA	1 cut(s)	362
Hpy188III	TCNNGA	2 cut(s)	125, 503
HpyAV	CCTTC	5 cut(s)	67, 141, 182, 401, 527
HpyF3I	CTNAG	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	584
HspAI	GCGC	3 cut(s)	14, 106, 491
Kzo9I	GATC	4 cut(s)	191, 232, 505, 541
LmnI	GCTCC	3 cut(s)	32, 76, 659
LpnPI	CCDG	8 cut(s)	180, 258, 285, 377, 407, 458, 473, 516
LweI	GCATC	1 cut(s)	502
MaeIII	GTNAC	2 cut(s)	206, 673
MalI	GATC	4 cut(s)	193, 234, 507, 543
MboI	GATC	4 cut(s)	191, 232, 505, 541
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	8, 552
MluCI	AATT	3 cut(s)	276, 425, 556
MlyI	GAGTC	2 cut(s)	257, 338
MmeI	TCCRAC	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	5 cut(s)	18, 428, 569, 612, 623
MspCI	CTTAAG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
NdeII	GATC	4 cut(s)	191, 232, 505, 541
NlaIV	GGNNCC	2 cut(s)	7, 78
NmuCI	GTSAC	2 cut(s)	206, 673
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	5 cut(s)	320, 326, 332, 338, 443
PleI	GAGTC	2 cut(s)	257, 338
PpsI	GAGTC	2 cut(s)	257, 338
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	7, 78
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	191
SaqAI	TTAA	5 cut(s)	18, 428, 569, 612, 623
Sau3AI	GATC	4 cut(s)	191, 232, 505, 541
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	2 cut(s)	257, 338
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	8, 552
SfaNI	GCATC	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	3 cut(s)	276, 425, 556
StyD4I	CCNGG	1 cut(s)	271
TaqI	TCGA	2 cut(s)	480, 544
TasI	AATT	3 cut(s)	276, 425, 556
TfiI	GAWTC	5 cut(s)	320, 326, 332, 338, 443
Tru1I	TTAA	5 cut(s)	18, 428, 569, 612, 623
Tru9I	TTAA	5 cut(s)	18, 428, 569, 612, 623
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	206, 673
Tsp45I	GTSAC	2 cut(s)	206, 673
TspDTI	ATGAA	4 cut(s)	297, 303, 315, 456
TspRI	CASTG	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	611
XapI	RAATTY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.