Rmu_sc0002856.1_g000001
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002856.1
Physical Location & Seq
Forward (+)
11 .. 5113
5103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002856.1_g000001.1.cds

Sequence Viewer

Length: 1794 bp
atgaaggtactgcgctctgttttatgttccagcttctgttattgttttgtgcttcctccagtgttgtttgatggttggaacattttgtatcattatcttgttgtagagaaaggttcttcggattcggattcggattccgactcaggtgatatagagaagaaatcaaggctcattgaccgaaaaacgctggaggaagaagaagaaggtagaaaggaactggaattaaatatcaaggatgaatctgatgagttcagattaccaactaagcaggagctcgaacaagaggcgcatcaacctcctgatctttcacaccttcagaggaggatgaaagagattgttcgagtgctcacaaatttcaaggcattgaggcaagagggggcgtcaaggaaggattatgttgaacagcttaagagagatttaagctcatactatggctacaatgactttttgattggagctttagtagagatgtttccagttgtggaacttgtggagctcattgaagcttttgaaaagcctcgacctatatgcctccgaactaacactctaaagacacgaaggagggatttggcagctagtttgataaacagaggagtaaacctagatcccttaagcaagtggtcaaaagttggactggttgtgtatgaatcacaagtcccagttggtgccactcctgaatatatggctggttattacatgctccaaagtgcaagctcctttttgcccgttatggcccttgctcctcaagaaaatgaacgagttgttgatatggcggctgctcctggtggtaaaacaacctatgtagcggctcttatgaaaaatagtggaattatatttgcaaatgaaatgaaggagccaaggctcaagtccctcactgctaatttgcatcgtatgggggtgacaaacacagtcgtttgtaactatgacggcaaggagctccctaaggttctgggtagcaatgcagttgatagagttctgttagatgctccttgcagcgggacaggggttatatccaaagatgagtctgttaaaacttctaaaagttctgatgaaatacagaaatgtgctcatctccagaagcaattgatactagctgcaattgacatggtggatgcgaattcgaaatcagggggatacattgtgtactccacgtgctccattatggttgctgagaatgaagctgttattgactatgcactcaggaagagaaatgttaaacttgttccctgcggacttgactttgggcgtccagggtttacccggtttagggaacagcgcttccatccatcagtggaaaagacgaggcggttctaccctcatgttcataatatggatggtttttttgtggcaaagctgaaaaagatgagcaatttgaagccaactacagcagaatctcgattatctgaaacagtagaggctgacacagtagacgtagatctcaacatgacagaagacgacagtgaaaagaatgccagagtagatgttcagcagcattcggcagatgaggacacagaaagtgaaaagaaggttttggaagatgggaaaccagaattggcaggcactgggaaaaagaggaaagaaaagaagctcccttcctttttctctcatctgaaagggcaattccccttggataaaaaagatgaaaagaaagtgcaatcctcggaccaaaaaaaggaaaagagagtgaaactgaaatttcctcctagggaggagattgcaaaagccagggaagagaagaggacagctctgaggaaaagcaaagctaagaacaataccgttggtacaggagaatga

Protein Analysis

597

Amino Acids

67.38

Weight (kDa)

8.45

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 665
AccI GTMKAC 1 cut(s) 1428
AciI CCGC 5 cut(s) 773, 806, 996, 1230, 1306
AclWI GGATC 1 cut(s) 599
AcsI RAATTY 3 cut(s) 352, 1117, 1694
AcuI CTGAAG 1 cut(s) 299
AcvI CACGTG 1 cut(s) 1152
AcyI GRCGYC 2 cut(s) 380, 1246
AfaI GTAC 3 cut(s) 9, 1145, 1783
AfeI AGCGCT 1 cut(s) 1277
AfiI CCNNNNNNNGG 4 cut(s) 995, 1266, 1267, 1672
AflII CTTAAG 2 cut(s) 407, 610
AgsI TTSAA 5 cut(s) 358, 401, 503, 512, 1375
AjnI CCWGG 3 cut(s) 781, 1249, 1724
AjuI GAANNNNNNNTTGG 2 cut(s) 1535, 1567
AloI GAACNNNNNNTCC 2 cut(s) 1263, 1295
Alw21I GWGCWC 6 cut(s) 276, 348, 498, 939, 1069, 1157
AlwI GGATC 1 cut(s) 599
AlwNI CAGNNNCTG 2 cut(s) 36, 1562
Aor51HI AGCGCT 1 cut(s) 1277
AoxI GGCC 1 cut(s) 732
ApeKI GCWGC 5 cut(s) 572, 776, 993, 1094, 1489
ApoI RAATTY 3 cut(s) 352, 1117, 1694
AspA2I CCTAGG 1 cut(s) 1703
AspLEI GCGC 3 cut(s) 15, 289, 1278
AspS9I GGNCC 2 cut(s) 733, 1663
AsuC2I CCSGG 1 cut(s) 1261
AsuHPI GGTGA 2 cut(s) 158, 910
AsuII TTCGAA 1 cut(s) 1121
AvaII GGWCC 1 cut(s) 1663
AvrII CCTAGG 1 cut(s) 1703
AxyI CCTNAGG 1 cut(s) 942
BanI GGYRCC 1 cut(s) 665
BanII GRGCYC 3 cut(s) 276, 498, 939
BbrPI CACGTG 1 cut(s) 1152
BbsI GAAGAC 1 cut(s) 1458
Bbv12I GWGCWC 6 cut(s) 276, 348, 498, 939, 1069, 1157
BbvI GCAGC 5 cut(s) 584, 763, 1005, 1081, 1501
BccI CCATC 5 cut(s) 65, 1290, 1294, 1328, 1532
BceAI ACGGC 1 cut(s) 943
BcgI CGANNNNNNTGC 2 cut(s) 510, 544
BciT130I CCWGG 3 cut(s) 783, 1251, 1726
BciVI GTATCC 1 cut(s) 1127
BcnI CCSGG 1 cut(s) 1261
BfaI CTAG 4 cut(s) 576, 602, 1091, 1704
BfmI CTRYAG 1 cut(s) 1383
BfoI RGCGCY 1 cut(s) 1279
BfrI CTTAAG 2 cut(s) 407, 610
BfuI GTATCC 1 cut(s) 1127
BglII AGATCT 1 cut(s) 1435
BisI GCNGC 7 cut(s) 573, 774, 777, 807, 994, 1095, 1490
BlnI CCTAGG 1 cut(s) 1703
BlsI GCNGC 7 cut(s) 574, 775, 778, 808, 995, 1096, 1491
Bme1390I CCNGG 4 cut(s) 783, 1251, 1261, 1726
Bme18I GGWCC 1 cut(s) 1663
BmgT120I GGNCC 2 cut(s) 733, 1663
BmiI GGNNCC 2 cut(s) 667, 855
BmrFI CCNGG 4 cut(s) 783, 1251, 1261, 1726
BmrI ACTGGG 2 cut(s) 653, 1572
BmsI GCATC 4 cut(s) 298, 895, 973, 1102
BmuI ACTGGG 2 cut(s) 653, 1572
BpiI GAAGAC 1 cut(s) 1458
BplI GAGNNNNNCTC 2 cut(s) 1729, 1761
BpmI CTGGAG 3 cut(s) 42, 209, 1058
Bpu14I TTCGAA 1 cut(s) 1121
BpuEI CTTGAG 2 cut(s) 729, 848
BpuMI CCSGG 1 cut(s) 1261
BsaAI YACGTR 1 cut(s) 1152
BsaHI GRCGYC 2 cut(s) 380, 1246
BsaJI CCNNGG 6 cut(s) 857, 1250, 1626, 1659, 1703, 1725
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 4 cut(s) 995, 1266, 1267, 1672
Bse1I ACTGG 6 cut(s) 59, 222, 476, 639, 659, 1567
Bse21I CCTNAGG 1 cut(s) 942
Bse3DI GCAATG 1 cut(s) 964
BseBI CCWGG 3 cut(s) 783, 1251, 1726
BseDI CCNNGG 6 cut(s) 857, 1250, 1626, 1659, 1703, 1725
BseGI GGATG 5 cut(s) 241, 330, 1117, 1282, 1339
BseLI CCNNNNNNNGG 4 cut(s) 995, 1266, 1267, 1672
BseMI GCAATG 1 cut(s) 964
BseMII CTCAG 4 cut(s) 156, 1161, 1213, 1739
BseNI ACTGG 6 cut(s) 59, 222, 476, 639, 659, 1567
BseRI GAGGAG 4 cut(s) 334, 606, 732, 1724
BseXI GCAGC 5 cut(s) 584, 763, 1005, 1081, 1501
BshFI GGCC 1 cut(s) 734
BshNI GGYRCC 1 cut(s) 665
BsiHKAI GWGCWC 6 cut(s) 276, 348, 498, 939, 1069, 1157
BsiSI CCGG 1 cut(s) 1261
BslFI GGGAC 3 cut(s) 641, 853, 1012
BslI CCNNNNNNNGG 4 cut(s) 995, 1266, 1267, 1672
BsmFI GGGAC 3 cut(s) 641, 853, 1012
BsmI GAATGC 2 cut(s) 1474, 1492
BsnI GGCC 1 cut(s) 734
Bsp119I TTCGAA 1 cut(s) 1121
Bsp1286I GDGCHC 6 cut(s) 276, 348, 498, 939, 1069, 1157
Bsp143I GATC 3 cut(s) 301, 604, 1435
BspACI CCGC 5 cut(s) 773, 806, 996, 1230, 1306
BspANI GGCC 1 cut(s) 734
BspCNI CTCAG 4 cut(s) 155, 1162, 1212, 1740
BspLI GGNNCC 2 cut(s) 667, 855
BspPI GGATC 1 cut(s) 599
BspT104I TTCGAA 1 cut(s) 1121
BspT107I GGYRCC 1 cut(s) 665
BspTI CTTAAG 2 cut(s) 407, 610
BsrDI GCAATG 1 cut(s) 964
BsrI ACTGG 6 cut(s) 59, 222, 476, 639, 659, 1567
BssECI CCNNGG 6 cut(s) 857, 1250, 1626, 1659, 1703, 1725
BssMI GATC 3 cut(s) 301, 604, 1435
BssNI GRCGYC 2 cut(s) 380, 1246
BssT1I CCWWGG 3 cut(s) 857, 1626, 1703
Bst2UI CCWGG 3 cut(s) 783, 1251, 1726
Bst4CI ACNGT 5 cut(s) 910, 1411, 1426, 1460, 1777
Bst6I CTCTTC 3 cut(s) 1199, 1725, 1730
BstACI GRCGYC 2 cut(s) 380, 1246
BstAFI CTTAAG 2 cut(s) 407, 610
BstBAI YACGTR 1 cut(s) 1152
BstBI TTCGAA 1 cut(s) 1121
BstC8I GCNNGC 2 cut(s) 712, 1558
BstDEI CTNAG 7 cut(s) 142, 264, 942, 1170, 1199, 1748, 1764
BstF5I GGATG 5 cut(s) 241, 330, 1117, 1282, 1339
BstH2I RGCGCY 1 cut(s) 1279
BstHHI GCGC 3 cut(s) 15, 289, 1278
BstKTI GATC 3 cut(s) 304, 607, 1438
BstMBI GATC 3 cut(s) 301, 604, 1435
BstNI CCWGG 3 cut(s) 783, 1251, 1726
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 4 cut(s) 781, 1249, 1259, 1724
BstSFI CTRYAG 1 cut(s) 1383
BstV1I GCAGC 5 cut(s) 584, 763, 1005, 1081, 1501
BstV2I GAAGAC 1 cut(s) 1458
BstX2I RGATCY 2 cut(s) 604, 1435
BstYI RGATCY 2 cut(s) 604, 1435
Bsu36I CCTNAGG 1 cut(s) 942
BsuI GTATCC 1 cut(s) 1127
BsuRI GGCC 1 cut(s) 734
BtsCI GGATG 5 cut(s) 241, 330, 1117, 1282, 1339
BtsI GCAGTG 1 cut(s) 873
BtsIMutI CAGTG 5 cut(s) 66, 873, 1296, 1465, 1560
Cac8I GCNNGC 2 cut(s) 712, 1558
CaiI CAGNNNCTG 2 cut(s) 36, 1562
CfoI GCGC 3 cut(s) 15, 289, 1278
Cfr13I GGNCC 2 cut(s) 733, 1663
CseI GACGC 2 cut(s) 369, 1235
Csp6I GTAC 3 cut(s) 8, 1144, 1782
CviAII CATG 4 cut(s) 697, 1105, 1319, 1444
CviQI GTAC 3 cut(s) 8, 1144, 1782
DdeI CTNAG 7 cut(s) 142, 264, 942, 1170, 1199, 1748, 1764
DpnI GATC 3 cut(s) 303, 606, 1437
DpnII GATC 3 cut(s) 301, 604, 1435
Eam1104I CTCTTC 3 cut(s) 1199, 1725, 1730
EarI CTCTTC 3 cut(s) 1199, 1725, 1730
Ecl136II GAGCTC 3 cut(s) 274, 496, 937
Eco130I CCWWGG 3 cut(s) 857, 1626, 1703
Eco24I GRGCYC 3 cut(s) 276, 498, 939
Eco47I GGWCC 1 cut(s) 1663
Eco47III AGCGCT 1 cut(s) 1277
Eco53kI GAGCTC 3 cut(s) 274, 496, 937
Eco57I CTGAAG 1 cut(s) 299
Eco72I CACGTG 1 cut(s) 1152
Eco81I CCTNAGG 1 cut(s) 942
EcoICRI GAGCTC 3 cut(s) 274, 496, 937
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 3 cut(s) 781, 1249, 1724
EcoT14I CCWWGG 3 cut(s) 857, 1626, 1703
EcoT38I GRGCYC 3 cut(s) 276, 498, 939
ErhI CCWWGG 3 cut(s) 857, 1626, 1703
FaeI CATG 4 cut(s) 700, 1108, 1322, 1447
FaqI GGGAC 3 cut(s) 641, 853, 1012
FatI CATG 4 cut(s) 696, 1104, 1318, 1443
FauI CCCGC 1 cut(s) 989
FblI GTMKAC 1 cut(s) 1428
Fnu4HI GCNGC 7 cut(s) 573, 774, 777, 807, 994, 1095, 1490
FokI GGATG 5 cut(s) 248, 337, 1124, 1269, 1346
FriOI GRGCYC 3 cut(s) 276, 498, 939
Fsp4HI GCNGC 7 cut(s) 573, 774, 777, 807, 994, 1095, 1490
FspBI CTAG 4 cut(s) 576, 602, 1091, 1704
GlaI GCGC 3 cut(s) 14, 288, 1277
GluI GCNGC 7 cut(s) 573, 774, 777, 807, 994, 1095, 1490
GsuI CTGGAG 3 cut(s) 42, 209, 1058
HaeII RGCGCY 1 cut(s) 1279
HaeIII GGCC 1 cut(s) 734
HapII CCGG 1 cut(s) 1261
HgaI GACGC 2 cut(s) 369, 1235
HhaI GCGC 3 cut(s) 15, 289, 1278
Hin1I GRCGYC 2 cut(s) 380, 1246
Hin1II CATG 4 cut(s) 700, 1108, 1322, 1447
Hin6I GCGC 3 cut(s) 13, 287, 1276
HinP1I GCGC 3 cut(s) 13, 287, 1276
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 8 cut(s) 122, 128, 134, 140, 239, 647, 1022, 1391
HpaII CCGG 1 cut(s) 1261
HphI GGTGA 2 cut(s) 158, 910
Hpy166II GTNNAC 4 cut(s) 598, 1144, 1257, 1429
Hpy188III TCNNGA 6 cut(s) 299, 674, 746, 1075, 1201, 1395
Hpy8I GTNNAC 4 cut(s) 598, 1144, 1257, 1429
HpyAV CCTTC 7 cut(s) 197, 323, 382, 552, 844, 1519, 1602
HpyCH4III ACNGT 5 cut(s) 910, 1411, 1426, 1460, 1777
HpyCH4IV ACGT 2 cut(s) 1151, 1431
HpyCH4V TGCA 9 cut(s) 710, 839, 886, 962, 993, 1097, 1196, 1654, 1718
HpyF3I CTNAG 7 cut(s) 142, 264, 942, 1170, 1199, 1748, 1764
HpySE526I ACGT 2 cut(s) 1151, 1431
Hsp92I GRCGYC 2 cut(s) 380, 1246
Hsp92II CATG 4 cut(s) 700, 1108, 1322, 1447
HspAI GCGC 3 cut(s) 13, 287, 1276
Kzo9I GATC 3 cut(s) 301, 604, 1435
Lsp1109I GCAGC 5 cut(s) 584, 763, 1005, 1081, 1501
LweI GCATC 4 cut(s) 298, 895, 973, 1102
MaeI CTAG 4 cut(s) 576, 602, 1091, 1704
MaeII ACGT 2 cut(s) 1151, 1431
MaeIII GTNAC 2 cut(s) 898, 917
MalI GATC 3 cut(s) 303, 606, 1437
MboI GATC 3 cut(s) 301, 604, 1435
MfeI CAATTG 2 cut(s) 1082, 1098
MflI RGATCY 2 cut(s) 604, 1435
MhlI GDGCHC 6 cut(s) 276, 348, 498, 939, 1069, 1157
MlyI GAGTC 2 cut(s) 134, 1031
MmeI TCCRAC 3 cut(s) 56, 162, 610
MseI TTAA 6 cut(s) 224, 408, 419, 611, 1029, 1215
MspA1I CMGCKG 1 cut(s) 996
MspCI CTTAAG 2 cut(s) 407, 610
MspI CCGG 1 cut(s) 1261
MspR9I CCNGG 4 cut(s) 783, 1251, 1261, 1726
MunI CAATTG 2 cut(s) 1082, 1098
Mva1269I GAATGC 2 cut(s) 1474, 1492
MvaI CCWGG 3 cut(s) 783, 1251, 1726
NciI CCSGG 1 cut(s) 1261
NdeII GATC 3 cut(s) 301, 604, 1435
NlaIII CATG 4 cut(s) 700, 1108, 1322, 1447
NlaIV GGNNCC 2 cut(s) 667, 855
NmuCI GTSAC 1 cut(s) 898
NspI RCATGY 1 cut(s) 700
NspV TTCGAA 1 cut(s) 1121
PctI GAATGC 2 cut(s) 1474, 1492
PfeI GAWTC 6 cut(s) 122, 128, 134, 239, 647, 1391
PkrI GCNGC 7 cut(s) 574, 775, 778, 808, 995, 1096, 1491
PleI GAGTC 2 cut(s) 134, 1030
PmaCI CACGTG 1 cut(s) 1152
PmlI CACGTG 1 cut(s) 1152
PpsI GAGTC 2 cut(s) 134, 1030
Ppu21I YACGTR 1 cut(s) 1152
Psp124BI GAGCTC 3 cut(s) 276, 498, 939
Psp6I CCWGG 3 cut(s) 781, 1249, 1724
PspCI CACGTG 1 cut(s) 1152
PspGI CCWGG 3 cut(s) 781, 1249, 1724
PspN4I GGNNCC 2 cut(s) 667, 855
PspPI GGNCC 2 cut(s) 733, 1663
PstNI CAGNNNCTG 2 cut(s) 36, 1562
PsuI RGATCY 2 cut(s) 604, 1435
RsaI GTAC 3 cut(s) 9, 1145, 1783
RsaNI GTAC 3 cut(s) 8, 1144, 1782
SacI GAGCTC 3 cut(s) 276, 498, 939
SaqAI TTAA 6 cut(s) 224, 408, 419, 611, 1029, 1215
SatI GCNGC 7 cut(s) 573, 774, 777, 807, 994, 1095, 1490
Sau3AI GATC 3 cut(s) 301, 604, 1435
Sau96I GGNCC 2 cut(s) 733, 1663
SchI GAGTC 2 cut(s) 134, 1031
ScrFI CCNGG 4 cut(s) 783, 1251, 1261, 1726
SduI GDGCHC 6 cut(s) 276, 348, 498, 939, 1069, 1157
SfaNI GCATC 4 cut(s) 298, 895, 973, 1102
SfcI CTRYAG 1 cut(s) 1383
SfuI TTCGAA 1 cut(s) 1121
SinI GGWCC 1 cut(s) 1663
SmlI CTYRAG 4 cut(s) 407, 610, 744, 863
SmoI CTYRAG 4 cut(s) 407, 610, 744, 863
SsiI CCGC 5 cut(s) 773, 806, 996, 1230, 1306
SspMI CTAG 4 cut(s) 576, 602, 1091, 1704
SstI GAGCTC 3 cut(s) 276, 498, 939
StyD4I CCNGG 4 cut(s) 781, 1249, 1259, 1724
StyI CCWWGG 3 cut(s) 857, 1626, 1703
TaaI ACNGT 5 cut(s) 910, 1411, 1426, 1460, 1777
TaiI ACGT 2 cut(s) 1154, 1434
TaqI TCGA 5 cut(s) 276, 340, 520, 1121, 1396
TaqII GACCGA 1 cut(s) 192
TatI WGTACW 1 cut(s) 1143
TauI GCSGC 2 cut(s) 776, 809
TfiI GAWTC 6 cut(s) 122, 128, 134, 239, 647, 1391
Tru1I TTAA 6 cut(s) 224, 408, 419, 611, 1029, 1215
Tru9I TTAA 6 cut(s) 224, 408, 419, 611, 1029, 1215
TscAI CASTG 5 cut(s) 66, 880, 1296, 1465, 1567
TseFI GTSAC 1 cut(s) 898
TseI GCWGC 5 cut(s) 572, 776, 993, 1094, 1489
Tsp45I GTSAC 1 cut(s) 898
TspRI CASTG 5 cut(s) 66, 880, 1296, 1465, 1567
Vha464I CTTAAG 2 cut(s) 407, 610
VpaK11BI GGWCC 1 cut(s) 1663
XapI RAATTY 3 cut(s) 352, 1117, 1694
XceI RCATGY 1 cut(s) 700
XmaJI CCTAGG 1 cut(s) 1703
XmiI GTMKAC 1 cut(s) 1428
XspI CTAG 4 cut(s) 576, 602, 1091, 1704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.