MD04G1138900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0017326
Physical Location & Seq
Forward (+)
22713474 .. 22714205
732 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1138900.v1.1.491

Sequence Viewer

Length: 237 bp
ATGAGCCTTCCAAAGTATTCTCTTCTTCCTTTCTTGTTGCTTCTGGTGGTTGTTTTTGCATCTGGGAAATCTTCAGCTGCTGAAGGAAGACCACTCTCCCTCTTGCCACAACAAGGATATGCGAAGGTTTTTGGTACACTTGGAATAGTTTGCGAGTGTTGTGATGGAGGTGAATGCACAAGTACCTGGACTGGGTCTTGCAGTAAGCTGACATGTCTTCCTTGGAAACAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.32

Weight (kDa)

8.26

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017326)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12730
malus_domestica MD04G1138900.v1.1 MD12G1154700.v1.1
prunus_persica Prupe.6G264500_v2.0.a1
pyrus_communis pycom04g12690 pycom12g14690
rosa_chinensis RchiOBHm_Chr3g0464651
rosa_roxburghii Rroxscaffold_6G00415490
rosa_rugosa Rorug03G0073500
rosa_samantha Rh3BG135800 Rh3CG138400 Rh3DG137400
rosa_wichuraiana Rw3G011120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 57, 102
AfaI GTAC 2 cut(s) 136, 184
AfiI CCNNNNNNNGG 2 cut(s) 113, 192
AflIII ACRYGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 77, 208
AluI AGCT 2 cut(s) 77, 208
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 94, 209
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 187
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 2 cut(s) 94, 209
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 192
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 113, 192
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 113, 192
BsmI GAATGC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 2 cut(s) 94, 209
CaiI CAGNNNCTG 1 cut(s) 80
Csp6I GTAC 2 cut(s) 135, 183
CviAII CATG 1 cut(s) 213
CviJI RGCY 3 cut(s) 6, 77, 208
CviKI_1 RGCY 3 cut(s) 6, 77, 208
CviQI GTAC 2 cut(s) 135, 183
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 221
Eco57I CTGAAG 2 cut(s) 57, 102
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 216
FaiI YATR 2 cut(s) 120, 214
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 216
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 17, 77, 118
HpyCH4V TGCA 3 cut(s) 59, 177, 201
Hsp92II CATG 1 cut(s) 216
LpnPI CCDG 5 cut(s) 29, 48, 172, 177, 199
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 68
MboII GAAGA 5 cut(s) 14, 17, 63, 99, 209
MnlI CCTC 2 cut(s) 110, 161
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 1 cut(s) 187
NlaIII CATG 1 cut(s) 216
NspI RCATGY 1 cut(s) 216
PciI ACATGT 1 cut(s) 212
PctI GAATGC 1 cut(s) 179
PflFI GACNNNGTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 79
PscI ACATGT 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 2 cut(s) 136, 184
RsaNI GTAC 2 cut(s) 135, 183
SatI GCNGC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 187
SetI ASST 5 cut(s) 79, 129, 172, 188, 210
SfaNI GCATC 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 221
TseI GCWGC 1 cut(s) 77
Tth111I GACNNNGTC 1 cut(s) 193
XceI RCATGY 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.