pycom12g14690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0017326
Physical Location & Seq
Forward (+)
17206063 .. 17206795
733 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g14690.1

Sequence Viewer

Length: 393 bp
ATGCTATTCCATGTCAAATTCCAAAACCTGCTGAGACGTAAGACTCCGGTTCGAGTTAAAATATATACTTCGGAACCCACTACCTTTACTAATTCCTGGACCTTCTGGAGCTGCAAAAGCACAGATTTTGCTGGGGGAAAAAGCACAGATATGAGCCTCCCAAAGTATTCTCTTCTTCCTTTCTTGTTGCTTCTAGTTGTTCTTATTACATCTAGGAAATCTTCAGGTGCTGAAGGAAGGCCACTCTCCCTCTCGCCACAACAAGGATATGCGAAGGTTTTTGGAACACTCGGAATAGTTTGCGAGTGTTGTGATGGAGCTGGAGGTGAATGCACAAGTACGTGGAATGGATCTTGCACTAAGCTGAAATGTCATCCTTGGAAACAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.44

Weight (kDa)

9.42

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017326)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12730
malus_domestica MD04G1138900.v1.1 MD12G1154700.v1.1
prunus_persica Prupe.6G264500_v2.0.a1
pyrus_communis pycom04g12690 pycom12g14690
rosa_chinensis RchiOBHm_Chr3g0464651
rosa_roxburghii Rroxscaffold_6G00415490
rosa_rugosa Rorug03G0073500
rosa_samantha Rh3BG135800 Rh3CG138400 Rh3DG137400
rosa_wichuraiana Rw3G011120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 2 cut(s) 207, 252
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 263
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 3 cut(s) 111, 320, 364
AluI AGCT 3 cut(s) 111, 320, 364
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 2 cut(s) 194, 213
BfuAI ACCTGC 1 cut(s) 36
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 97
BpmI CTGGAG 2 cut(s) 127, 342
BsaAI YACGTR 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 28
BsmBI CGTCTC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 350
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 32, 360
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 339
CviAII CATG 1 cut(s) 11
CviJI RGCY 5 cut(s) 111, 156, 241, 320, 364
CviKI_1 RGCY 5 cut(s) 111, 156, 241, 320, 364
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 2 cut(s) 32, 360
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 207, 252
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 1 cut(s) 14
FaiI YATR 5 cut(s) 12, 64, 66, 152, 270
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 112
FokI GGATG 1 cut(s) 360
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 2 cut(s) 194, 213
GluI GCNGC 1 cut(s) 112
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 127, 342
HaeIII GGCC 1 cut(s) 241
HapII CCGG 1 cut(s) 47
Hin1II CATG 1 cut(s) 14
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 73, 293
Hpy188III TCNNGA 1 cut(s) 106
HpyAV CCTTC 4 cut(s) 112, 227, 231, 268
HpyCH4IV ACGT 2 cut(s) 37, 341
HpyCH4V TGCA 3 cut(s) 114, 333, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 2 cut(s) 32, 360
HpySE526I ACGT 2 cut(s) 37, 341
Hsp92II CATG 1 cut(s) 14
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 108, 317
LpnPI CCDG 8 cut(s) 41, 60, 82, 91, 109, 117, 210, 306
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 2 cut(s) 194, 213
MaeII ACGT 2 cut(s) 37, 341
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 3 cut(s) 164, 167, 213
MflI RGATCY 1 cut(s) 350
MluCI AATT 2 cut(s) 17, 91
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 3 cut(s) 167, 260, 317
MseI TTAA 2 cut(s) 57, 391
MslI CAYNNNNRTG 1 cut(s) 149
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 1 cut(s) 350
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 75
PctI GAATGC 1 cut(s) 335
PfoI TCCNGGA 1 cut(s) 95
PkrI GCNGC 1 cut(s) 113
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 2 cut(s) 57, 391
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 97
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 2 cut(s) 17, 91
SspMI CTAG 2 cut(s) 194, 213
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 377
TaiI ACGT 2 cut(s) 40, 344
TaqI TCGA 1 cut(s) 52
TasI AATT 2 cut(s) 17, 91
Tru1I TTAA 2 cut(s) 57, 391
Tru9I TTAA 2 cut(s) 57, 391
TseI GCWGC 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 1 cut(s) 17
XspI CTAG 2 cut(s) 194, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.