pycom04g12690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0017326
Physical Location & Seq
Forward (+)
15658346 .. 15658907
562 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g12690.2

Sequence Viewer

Length: 351 bp
ATGTTTTTTCTAGTTGGAATTAAAATATCTACTTCTGAACCCACTACCATTACTAATTCCTGGACCTTCTGCAGCTGCAAAAAGCACAGATCTTGCTGGGAAAAAAGCACAGATATGAGCCTTCCAAAGTATTCTCTTCTTCCTTTCTTGTTGCTTCTGGTGGTTGTTTTTGCGTCTGGGAAATCTTCAGCTGCTGAAGGAAGACCACTCTCCCTCTTGCCACAACAAGGATATGCGCAGGTTTTTGGTACACTTGGAATAGTTTGCGAGTGTTGTGATGGAGGTGAATGCACAAGTACCTGGACTGGGTCTTGCAGTAAGCTGACATGTCTTCCTTGGAAACAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.71

Weight (kDa)

8.4

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017326)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12730
malus_domestica MD04G1138900.v1.1 MD12G1154700.v1.1
prunus_persica Prupe.6G264500_v2.0.a1
pyrus_communis pycom04g12690 pycom12g14690
rosa_chinensis RchiOBHm_Chr3g0464651
rosa_roxburghii Rroxscaffold_6G00415490
rosa_rugosa Rorug03G0073500
rosa_samantha Rh3BG135800 Rh3CG138400 Rh3DG137400
rosa_wichuraiana Rw3G011120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 171, 216
AfaI GTAC 2 cut(s) 250, 298
AfiI CCNNNNNNNGG 2 cut(s) 227, 306
AflIII ACRYGT 1 cut(s) 326
AjnI CCWGG 2 cut(s) 59, 299
AluBI AGCT 3 cut(s) 75, 191, 322
AluI AGCT 3 cut(s) 75, 191, 322
AlwNI CAGNNNCTG 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 72, 75, 191
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 208, 323
BbvI GCAGC 3 cut(s) 62, 84, 178
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 61, 301
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 229
BglII AGATCT 1 cut(s) 89
BisI GCNGC 3 cut(s) 73, 76, 192
BlsI GCNGC 3 cut(s) 74, 77, 193
Bme1390I CCNGG 2 cut(s) 61, 301
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 61, 301
BmrI ACTGGG 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 2 cut(s) 208, 323
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 306
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 61, 301
BseDI CCNNGG 1 cut(s) 335
BseLI CCNNNNNNNGG 2 cut(s) 227, 306
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 3 cut(s) 62, 84, 178
BseYI CCCAGC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 227, 306
BsmI GAATGC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 89
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 61, 301
Bst6I CTCTTC 1 cut(s) 141
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 1 cut(s) 92
BstMBI GATC 1 cut(s) 89
BstNI CCWGG 2 cut(s) 61, 301
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 59, 299
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 62, 84, 178
BstV2I GAAGAC 2 cut(s) 208, 323
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BveI ACCTGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 63
CseI GACGC 1 cut(s) 162
Csp6I GTAC 2 cut(s) 249, 297
CviAII CATG 1 cut(s) 327
CviJI RGCY 4 cut(s) 75, 120, 191, 322
CviKI_1 RGCY 4 cut(s) 75, 120, 191, 322
CviQI GTAC 2 cut(s) 249, 297
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 63
Eco57I CTGAAG 2 cut(s) 171, 216
EcoRII CCWGG 2 cut(s) 59, 299
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 330
FaiI YATR 3 cut(s) 116, 234, 328
FatI CATG 1 cut(s) 326
Fnu4HI GCNGC 3 cut(s) 73, 76, 192
Fsp4HI GCNGC 3 cut(s) 73, 76, 192
FspBI CTAG 1 cut(s) 11
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 1 cut(s) 237
GluI GCNGC 3 cut(s) 73, 76, 192
GsaI CCCAGC 1 cut(s) 100
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 238
Hin1II CATG 1 cut(s) 330
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 76, 131, 191
HpyCH4V TGCA 4 cut(s) 72, 78, 291, 315
Hsp92II CATG 1 cut(s) 330
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 1 cut(s) 89
LpnPI CCDG 9 cut(s) 46, 73, 82, 143, 162, 224, 286, 291, 313
Lsp1109I GCAGC 3 cut(s) 62, 84, 178
MaeI CTAG 1 cut(s) 11
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 5 cut(s) 128, 131, 177, 213, 323
MflI RGATCY 1 cut(s) 89
MluCI AATT 2 cut(s) 18, 55
MnlI CCTC 2 cut(s) 224, 275
MseI TTAA 2 cut(s) 21, 349
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 75, 191
MspR9I CCNGG 2 cut(s) 61, 301
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 2 cut(s) 61, 301
NdeII GATC 1 cut(s) 89
NlaIII CATG 1 cut(s) 330
NsbI TGCGCA 1 cut(s) 237
NspI RCATGY 1 cut(s) 330
PciI ACATGT 1 cut(s) 326
PctI GAATGC 1 cut(s) 293
PflFI GACNNNGTC 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 3 cut(s) 74, 77, 193
PscI ACATGT 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 59, 299
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 2 cut(s) 59, 299
PspPI GGNCC 1 cut(s) 63
PstI CTGCAG 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 307
PvuII CAGCTG 2 cut(s) 75, 191
RsaI GTAC 2 cut(s) 250, 298
RsaNI GTAC 2 cut(s) 249, 297
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 21, 349
SatI GCNGC 3 cut(s) 73, 76, 192
Sau3AI GATC 1 cut(s) 89
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 61, 301
SetI ASST 7 cut(s) 68, 77, 193, 243, 286, 302, 324
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 2 cut(s) 18, 55
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 59, 299
StyI CCWWGG 1 cut(s) 335
TasI AATT 2 cut(s) 18, 55
Tru1I TTAA 2 cut(s) 21, 349
Tru9I TTAA 2 cut(s) 21, 349
TseI GCWGC 3 cut(s) 72, 75, 191
Tth111I GACNNNGTC 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 63
XceI RCATGY 1 cut(s) 330
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.