Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0018903

Physical Location & Seq

Genomic Coordinates Forward (+)

23871741 .. 23873095

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1150000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGTTTGATGTTGGTGCAAATAAGCTTATTGGGTCAATTCCGGACCAACTCAGTTCGTTGTTGAATTTAACTCATTTTTGGGTTGATGACAACAATCTCATTGGAGCAATTCCGGATTGGATAGGAAACTTTTCTTCCCGGTACGCAATCTCTCTTGCTTACAACAATTTTAAGGAAGCATACCAAATGCTCTCGGGCGTTACTCAGAACCAGCTGCATGGAGAGCTCCCACAGAATGTGGGGACTACTCTTCCTAATCTTGAGATATTTGCTGGCGGTATCAACAAATTCACCGGAAGTATTCCTGTTTCGTTGTCAAATGCTTCTAAACTTCTATTTCTTGATTTTGCCGAAAATGGCCTCACGGGAAAACTCCCTGCTGAAAATTTTGGAAGTTTGAGAAGCTTGTTGAGACTAAACTTTGACGACAATAGGCTTGGAAGTGGGAAAACAGGTGACCTGAATTCTCTCAGTTTCCTGGCGAATTGTACTAATCTTGAGGTGTTGAGTTTTAGTCGTAATCGTTTTGGAGGAGAATTGCCAGAATCCATAGCCAACCTTTCGACGAAACTGAGAATTTTTACAATGGGTGGGAATTTAATACATGGAAGCATCCCTTTCGGCATTGTGAATCTTGTAAACTTGACCAGTCTAGGAATGGAACAAAACTCTCTTGGTGGTACTGTCCCTGATGCAATCGGAAAGCTTCAGAAGTTGCAGGGGATGTATTTATATCTTAACCAATTTTCCGGGACAATCCCATCGACGCTAGGCAACTTGACTTCGGTCACAAGGCTCTTCATGGAGGGGAATAGGTTTGAGGGAAGCATACCTCCAAGTCTTGGGAGCTGCCAAAACTTGTTGATGCTTAACCTTTCTAGTAATCAGCTAAGTGGCACCATACCTAAAGAGGTTATCGAGCTTTCATCCCTTTCAATTTCTTTGTCCATATCGAACAGTTCTTTGACTCGTTCTCTACCATCTGAAGTGGGCGAGTTGGTACATCTCTCGGAGCTAGATGTATCAGGAAACAAGTTATCAGGTGAAATCCCCAAAACCCTTGGCAGCTGTGCTAGTTTGGTGCGTCCATATTTGGAAGGTAACGAATTTGAAAGAACAATTCCTCAATCTCTGGCCAAGTTAAGAGGCTTGGAAGAACTTGATATTTCATGCAATAATTTATCTGGCCAGATTCCTGACTTTTTGGGTAAGCTTGGATCTCTACAGCAACTCAATGTTTCACATAATCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

419

Amino Acids

45.05

Weight (kDa)

5.25

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	154 - 268	6.9e-07	Leucine-rich repeat region
LRR_14	PF23598	277 - 413	5.6e-12	Leucine-rich repeat region
LRR_8	PF13855	364 - 418	3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018903)

Species	Orthologous Gene IDs
malus_domestica	MD04G1150000.v1.1 MD04G1150200.v1.1 MD05G1075900.v1.1
prunus_persica	Prupe.6G248200_v2.0.a1
pyrus_communis	pycom12g11010
rosa_chinensis	RchiOBHm_Chr3g0463441 RchiOBHm_Chr4g0408581
rosa_multiflora	Rmu_sc0001053.1_g000011
rosa_roxburghii	Rroxscaffold_4G00322890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	842
AccIII	TCCGGA	2 cut(s)	40, 112
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	1225
AcoI	YGGCCR	2 cut(s)	1134, 1186
AcsI	RAATTY	7 cut(s)	64, 287, 385, 463, 576, 595, 1106
AcuI	CTGAAG	2 cut(s)	692, 1005
AfaI	GTAC	4 cut(s)	143, 490, 682, 1002
AfiI	CCNNNNNNNGG	1 cut(s)	842
AgsI	TTSAA	3 cut(s)	64, 936, 1112
AjnI	CCWGG	1 cut(s)	477
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	1225
Ama87I	CYCGRG	1 cut(s)	193
Aor13HI	TCCGGA	2 cut(s)	40, 112
AoxI	GGCC	3 cut(s)	358, 1134, 1186
ApeKI	GCWGC	3 cut(s)	214, 849, 1065
ApoI	RAATTY	7 cut(s)	64, 287, 385, 463, 576, 595, 1106
Asp700I	GAANNNNTTC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	2 cut(s)	139, 751
AsuHPI	GGTGA	3 cut(s)	283, 467, 1055
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	43
BalI	TGGCCA	2 cut(s)	1136, 1188
BanI	GGYRCC	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	201, 836, 1077
BccI	CCATC	2 cut(s)	769, 988
BcgI	CGANNNNNNTGC	2 cut(s)	601, 635
BciT130I	CCWGG	1 cut(s)	479
BcnI	CCSGG	2 cut(s)	139, 751
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	5 cut(s)	653, 770, 879, 1016, 1074
BfmI	CTRYAG	1 cut(s)	1223
BisI	GCNGC	3 cut(s)	215, 850, 1066
BlsI	GCNGC	3 cut(s)	216, 851, 1067
Bme1390I	CCNGG	3 cut(s)	139, 479, 751
Bme18I	GGWCC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	898
BmrFI	CCNGG	3 cut(s)	139, 479, 751
BmsI	GCATC	3 cut(s)	621, 682, 855
BoxI	GACNNNNGTC	1 cut(s)	785
BpuEI	CTTGAG	2 cut(s)	281, 518
BpuMI	CCSGG	2 cut(s)	139, 751
BsaJI	CCNNGG	1 cut(s)	1060
BsaWI	WCCGGW	3 cut(s)	40, 112, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse1I	ACTGG	1 cut(s)	648
BseAI	TCCGGA	2 cut(s)	40, 112
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	1 cut(s)	1060
BseGI	GGATG	3 cut(s)	612, 729, 926
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseMII	CTCAG	4 cut(s)	64, 218, 484, 563
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	3 cut(s)	201, 836, 1077
BshFI	GGCC	3 cut(s)	360, 1136, 1188
BshNI	GGYRCC	1 cut(s)	896
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	5 cut(s)	41, 113, 139, 294, 750
BslFI	GGGAC	3 cut(s)	256, 671, 766
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	3 cut(s)	256, 671, 766
BsnI	GGCC	3 cut(s)	360, 1136, 1188
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp13I	TCCGGA	2 cut(s)	40, 112
Bsp143I	GATC	1 cut(s)	1217
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	3 cut(s)	360, 1136, 1188
BspCNI	CTCAG	4 cut(s)	63, 217, 483, 564
BspEI	TCCGGA	2 cut(s)	40, 112
BspLI	GGNNCC	1 cut(s)	898
BspPI	GGATC	1 cut(s)	1225
BspQI	GCTCTTC	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	896
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	1 cut(s)	1060
BssMI	GATC	1 cut(s)	1217
BssT1I	CCWWGG	1 cut(s)	1060
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	685, 959
Bst6I	CTCTTC	2 cut(s)	255, 803
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	5 cut(s)	50, 204, 470, 572, 890
BstEII	GGTNACC	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	612, 729, 926
BstKTI	GATC	1 cut(s)	1220
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	1217
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	479
BstPAI	GACNNNNGTC	1 cut(s)	785
BstPI	GGTNACC	1 cut(s)	455
BstSCI	CCNGG	3 cut(s)	137, 477, 749
BstSFI	CTRYAG	1 cut(s)	1223
BstV1I	GCAGC	3 cut(s)	201, 836, 1077
BstX2I	RGATCY	1 cut(s)	1217
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	1217
BsuRI	GGCC	3 cut(s)	360, 1136, 1188
BtsCI	GGATG	3 cut(s)	612, 729, 926
Cac8I	GCNNGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	2 cut(s)	775, 1073
Csp6I	GTAC	4 cut(s)	142, 489, 681, 1001
CviAII	CATG	4 cut(s)	218, 605, 802, 1170
CviQI	GTAC	4 cut(s)	142, 489, 681, 1001
DdeI	CTNAG	5 cut(s)	50, 204, 470, 572, 890
DpnI	GATC	1 cut(s)	1219
DpnII	GATC	1 cut(s)	1217
EaeI	YGGCCR	2 cut(s)	1134, 1186
Eam1104I	CTCTTC	2 cut(s)	255, 803
EarI	CTCTTC	2 cut(s)	255, 803
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	1060
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	692, 1005
Eco88I	CYCGRG	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	455
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	1060
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	1060
FaeI	CATG	4 cut(s)	221, 608, 805, 1173
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FaqI	GGGAC	3 cut(s)	256, 671, 766
FatI	CATG	4 cut(s)	217, 604, 801, 1169
Fnu4HI	GCNGC	3 cut(s)	215, 850, 1066
FokI	GGATG	3 cut(s)	599, 736, 913
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	3 cut(s)	215, 850, 1066
FspBI	CTAG	5 cut(s)	653, 770, 879, 1016, 1074
GluI	GCNGC	3 cut(s)	215, 850, 1066
HaeIII	GGCC	3 cut(s)	360, 1136, 1188
HapII	CCGG	5 cut(s)	41, 113, 139, 294, 750
HgaI	GACGC	2 cut(s)	775, 1073
Hin1II	CATG	4 cut(s)	221, 608, 805, 1173
HindIII	AAGCTT	4 cut(s)	23, 403, 704, 1211
HinfI	GANTC	4 cut(s)	545, 631, 967, 1192
HpaII	CCGG	5 cut(s)	41, 113, 139, 294, 750
HphI	GGTGA	3 cut(s)	283, 467, 1055
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	5 cut(s)	207, 701, 711, 985, 1012
Hpy188III	TCNNGA	7 cut(s)	41, 113, 260, 341, 497, 1026, 1196
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	2 cut(s)	568, 769
HpyAV	CCTTC	1 cut(s)	1091
HpyCH4III	ACNGT	2 cut(s)	685, 959
HpyCH4V	TGCA	5 cut(s)	17, 217, 695, 718, 1173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	5 cut(s)	50, 204, 470, 572, 890
Hsp92II	CATG	4 cut(s)	221, 608, 805, 1173
Kpn2I	TCCGGA	2 cut(s)	40, 112
Kzo9I	GATC	1 cut(s)	1217
LguI	GCTCTTC	1 cut(s)	803
LmnI	GCTCC	4 cut(s)	104, 231, 846, 1012
Lsp1109I	GCAGC	3 cut(s)	201, 836, 1077
LweI	GCATC	3 cut(s)	621, 682, 855
MaeI	CTAG	5 cut(s)	653, 770, 879, 1016, 1074
MaeIII	GTNAC	4 cut(s)	199, 455, 787, 1100
MalI	GATC	1 cut(s)	1219
MboI	GATC	1 cut(s)	1217
MboII	GAAGA	4 cut(s)	126, 242, 790, 1166
MflI	RGATCY	1 cut(s)	1217
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	2 cut(s)	1136, 1188
MluNI	TGGCCA	2 cut(s)	1136, 1188
MlyI	GAGTC	1 cut(s)	961
MnlI	CCTC	9 cut(s)	371, 493, 524, 799, 814, 843, 904, 1134, 1139
Mox20I	TGGCCA	2 cut(s)	1136, 1188
MroI	TCCGGA	2 cut(s)	40, 112
MroXI	GAANNNNTTC	1 cut(s)	130
MscI	TGGCCA	2 cut(s)	1136, 1188
MseI	TTAA	6 cut(s)	68, 171, 599, 738, 870, 1142
Msp20I	TGGCCA	2 cut(s)	1136, 1188
MspA1I	CMGCKG	2 cut(s)	214, 1068
MspI	CCGG	5 cut(s)	41, 113, 139, 294, 750
MspR9I	CCNGG	3 cut(s)	139, 479, 751
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	139, 751
NdeII	GATC	1 cut(s)	1217
NlaIII	CATG	4 cut(s)	221, 608, 805, 1173
NlaIV	GGNNCC	1 cut(s)	898
NmuCI	GTSAC	2 cut(s)	455, 787
PciSI	GCTCTTC	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	545, 631, 1192
PflMI	CCANNNNNTGG	1 cut(s)	842
PfoI	TCCNGGA	1 cut(s)	749
PkrI	GCNGC	3 cut(s)	216, 851, 1067
PleI	GAGTC	1 cut(s)	961
PpsI	GAGTC	1 cut(s)	961
PshAI	GACNNNNGTC	1 cut(s)	785
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	477
PspEI	GGTNACC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	898
PspPI	GGNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	1217
PvuII	CAGCTG	2 cut(s)	214, 1068
RsaI	GTAC	4 cut(s)	143, 490, 682, 1002
RsaNI	GTAC	4 cut(s)	142, 489, 681, 1001
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	803
SaqAI	TTAA	6 cut(s)	68, 171, 599, 738, 870, 1142
SatI	GCNGC	3 cut(s)	215, 850, 1066
Sau3AI	GATC	1 cut(s)	1217
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	961
ScrFI	CCNGG	3 cut(s)	139, 479, 751
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	3 cut(s)	621, 682, 855
SfcI	CTRYAG	1 cut(s)	1223
SinI	GGWCC	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	260, 497
SmoI	CTYRAG	2 cut(s)	260, 497
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	5 cut(s)	653, 770, 879, 1016, 1074
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	137, 477, 749
StyI	CCWWGG	1 cut(s)	1060
TaaI	ACNGT	2 cut(s)	685, 959
TaqI	TCGA	4 cut(s)	563, 764, 918, 953
TaqII	GACCGA	1 cut(s)	775
TatI	WGTACW	1 cut(s)	488
TfiI	GAWTC	3 cut(s)	545, 631, 1192
Tru1I	TTAA	6 cut(s)	68, 171, 599, 738, 870, 1142
Tru9I	TTAA	6 cut(s)	68, 171, 599, 738, 870, 1142
TseFI	GTSAC	2 cut(s)	455, 787
TseI	GCWGC	3 cut(s)	214, 849, 1065
Tsp45I	GTSAC	2 cut(s)	455, 787
TspDTI	ATGAA	3 cut(s)	790, 915, 1158
Van91I	CCANNNNNTGG	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	7 cut(s)	64, 287, 385, 463, 576, 595, 1106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	5 cut(s)	653, 770, 879, 1016, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.