Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001053.1

Orthogroup ID

OG0018903

Physical Location & Seq

Genomic Coordinates Forward (+)

44371 .. 45429

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001053.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgggtcttcttctacgcctgcaactgcttcatctgtctctcaattccttcagtgggaaatttccatctaatatatctcactgcacacaactaagagtgctcaatgttatttccaatgatcttactgggtcgatccctgatcaacttggttcattattgaagttaactcatctatggcctcagggtaaccatcttactggaaaaatcccagagtggataggaaacttttcatctttgtacagtatagctcttggcgacaacaatttacagggaaggatacccattcagctcgggcgcctaacaagcctgggaaacttcctagtttcgagcaataatctgtctggtatggtcccttcttcaatttataatatttcttccatacacattttcagtgttactgacaaccagctgcgtggagagctgctgcaaaacgttggcattactcttcctaatttggaggtatttgccggcggtgtcaacaaattcacaggaactgttccagcatcattgtcaaatgcttgtagacttcggcttcttgattttgctgaaaatggtctcactggtaaactccctgctgaaagtcttggaaggttgaaatggttaagtagagtgaactttgttgacaattcactgggaagtgggaaagctggtgaccttacttctctcagtttccttgctaattgtactaatcttgaggtgttgagttttagccgtaatcatcttggaggagaattgccagaatccatagccaacctatcaaccaaactgaggatatttacaacgggaggaaatctgatgtatggacccctccctactggcattggaaatctggtaaacttcacaaatcttggaatggaacaaaaccacattggtggtagtctccctgatgtgatcgggaagttttacaagttagagggactgtatctgaatcttaacatattttcagggccaatcccatcctccctgggaaacttgactttggtgacaaggctcttcatggagggaaataggtttgagggaagcatacctccaagtctcggaaactgccaaaatctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

352

Amino Acids

37.89

Weight (kDa)

8.69

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018903)

Species	Orthologous Gene IDs
malus_domestica	MD04G1150000.v1.1 MD04G1150200.v1.1 MD05G1075900.v1.1
prunus_persica	Prupe.6G248200_v2.0.a1
pyrus_communis	pycom12g11010
rosa_chinensis	RchiOBHm_Chr3g0463441 RchiOBHm_Chr4g0408581
rosa_multiflora	Rmu_sc0001053.1_g000011
rosa_roxburghii	Rroxscaffold_4G00322890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	523
AciI	CCGC	1 cut(s)	471
AclI	AACGTT	1 cut(s)	432
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	59, 482
AcuI	CTGAAG	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	2 cut(s)	239, 685
AfiI	CCNNNNNNNGG	3 cut(s)	54, 768, 1037
AgsI	TTSAA	3 cut(s)	160, 360, 595
AjnI	CCWGG	2 cut(s)	306, 963
AleI	CACNNNNGTG	1 cut(s)	870
AluBI	AGCT	5 cut(s)	248, 289, 409, 421, 647
AluI	AGCT	5 cut(s)	248, 289, 409, 421, 647
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	4 cut(s)	42, 560, 884, 1040
AlwI	GGATC	1 cut(s)	127
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	176, 947
ApeKI	GCWGC	3 cut(s)	409, 421, 424
ApoI	RAATTY	2 cut(s)	59, 482
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	3 cut(s)	349, 803, 947
AsuHPI	GGTGA	2 cut(s)	662, 994
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	349, 803
AxyI	CCTNAGG	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	294
BarI	GAAGNNNNNNTAC	2 cut(s)	337, 369
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	396, 408, 411
BccI	CCATC	3 cut(s)	73, 198, 964
BceAI	ACGGC	1 cut(s)	696
BciT130I	CCWGG	2 cut(s)	308, 965
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	4 cut(s)	42, 560, 884, 1040
BfaI	CTAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	3 cut(s)	410, 422, 425
BlsI	GCNGC	3 cut(s)	411, 423, 426
Bme1390I	CCNGG	2 cut(s)	308, 965
Bme18I	GGWCC	2 cut(s)	349, 803
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	3 cut(s)	349, 803, 947
BmiI	GGNNCC	3 cut(s)	296, 351, 805
BmrFI	CCNGG	2 cut(s)	308, 965
BmrI	ACTGGG	2 cut(s)	135, 641
BmsI	GCATC	1 cut(s)	512
BmuI	ACTGGG	2 cut(s)	135, 641
BpuEI	CTTGAG	1 cut(s)	713
BsaHI	GRCGYC	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	3 cut(s)	307, 963, 964
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 768, 1037
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	5 cut(s)	130, 202, 565, 636, 820
Bse21I	CCTNAGG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	308, 965
BseDI	CCNNGG	3 cut(s)	307, 963, 964
BseGI	GGATG	1 cut(s)	956
BseLI	CCNNNNNNNGG	3 cut(s)	54, 768, 1037
BseMII	CTCAG	3 cut(s)	194, 679, 758
BseNI	ACTGG	5 cut(s)	130, 202, 565, 636, 820
BseRI	GAGGAG	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	396, 408, 411
BsgI	GTGCAG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	178, 949
BshNI	GGYRCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	335, 930
BslI	CCNNNNNNNGG	3 cut(s)	54, 768, 1037
BsmAI	GTCTC	4 cut(s)	42, 560, 884, 1040
BsmFI	GGGAC	2 cut(s)	335, 930
BsnI	GGCC	2 cut(s)	178, 949
Bso31I	GGTCTC	1 cut(s)	560
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	118, 132, 139, 891
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	2 cut(s)	178, 949
BspCNI	CTCAG	3 cut(s)	193, 678, 759
BspLI	GGNNCC	3 cut(s)	296, 351, 805
BspPI	GGATC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	998
BspT107I	GGYRCC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	5 cut(s)	130, 202, 565, 636, 820
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	307, 963, 964
BssMI	GATC	4 cut(s)	118, 132, 139, 891
BssNI	GRCGYC	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	308, 965
Bst4CI	ACNGT	3 cut(s)	242, 496, 921
Bst6I	CTCTTC	2 cut(s)	450, 998
BstACI	GRCGYC	1 cut(s)	295
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	20, 469
BstDEI	CTNAG	4 cut(s)	92, 180, 665, 767
BstEII	GGTNACC	2 cut(s)	185, 650
BstF5I	GGATG	1 cut(s)	956
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	4 cut(s)	121, 135, 142, 894
BstMAI	GTCTC	4 cut(s)	42, 560, 884, 1040
BstMBI	GATC	4 cut(s)	118, 132, 139, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 418
BstNI	CCWGG	2 cut(s)	308, 965
BstPI	GGTNACC	2 cut(s)	185, 650
BstSCI	CCNGG	2 cut(s)	306, 963
BstV1I	GCAGC	3 cut(s)	396, 408, 411
BstXI	CCANNNNNNTGG	3 cut(s)	197, 413, 872
Bsu36I	CCTNAGG	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	178, 949
BtsCI	GGATG	1 cut(s)	956
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	5 cut(s)	58, 79, 397, 558, 629
Cac8I	GCNNGC	2 cut(s)	20, 469
CaiI	CAGNNNCTG	1 cut(s)	494
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	349, 803, 947
Csp6I	GTAC	2 cut(s)	238, 684
CviAII	CATG	1 cut(s)	997
CviQI	GTAC	2 cut(s)	238, 684
DdeI	CTNAG	4 cut(s)	92, 180, 665, 767
DinI	GGCGCC	1 cut(s)	296
DpnI	GATC	4 cut(s)	120, 134, 141, 893
DpnII	GATC	4 cut(s)	118, 132, 139, 891
Eam1104I	CTCTTC	2 cut(s)	450, 998
EarI	CTCTTC	2 cut(s)	450, 998
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	349, 803
Eco57I	CTGAAG	1 cut(s)	34
Eco81I	CCTNAGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	290
Eco91I	GGTNACC	2 cut(s)	185, 650
EcoO65I	GGTNACC	2 cut(s)	185, 650
EcoRII	CCWGG	2 cut(s)	306, 963
EgeI	GGCGCC	1 cut(s)	296
EheI	GGCGCC	1 cut(s)	296
FaeI	CATG	1 cut(s)	1000
FaqI	GGGAC	2 cut(s)	335, 930
FatI	CATG	1 cut(s)	996
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	410, 422, 425
FokI	GGATG	1 cut(s)	943
Fsp4HI	GCNGC	3 cut(s)	410, 422, 425
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	3 cut(s)	410, 422, 425
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	178, 949
HapII	CCGG	1 cut(s)	468
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	1000
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	3 cut(s)	165, 478, 622
HindII	GTYRAC	3 cut(s)	165, 478, 622
HinfI	GANTC	2 cut(s)	740, 928
HpaI	GTTAAC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	2 cut(s)	662, 994
Hpy166II	GTNNAC	7 cut(s)	165, 478, 524, 566, 613, 622, 835
Hpy188I	TCNGA	3 cut(s)	795, 927, 1040
Hpy188III	TCNNGA	3 cut(s)	536, 692, 895
Hpy8I	GTNNAC	7 cut(s)	165, 478, 524, 566, 613, 622, 835
HpyAV	CCTTC	4 cut(s)	58, 267, 363, 582
HpyCH4III	ACNGT	3 cut(s)	242, 496, 921
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	22, 84, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 418
HpyF3I	CTNAG	4 cut(s)	92, 180, 665, 767
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	1000
HspAI	GCGC	1 cut(s)	295
KasI	GGCGCC	1 cut(s)	294
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	118, 132, 139, 891
LguI	GCTCTTC	1 cut(s)	998
Lsp1109I	GCAGC	3 cut(s)	396, 408, 411
LweI	GCATC	1 cut(s)	512
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	4 cut(s)	185, 394, 650, 982
MalI	GATC	4 cut(s)	120, 134, 141, 893
MboI	GATC	4 cut(s)	118, 132, 139, 891
MboII	GAAGA	4 cut(s)	348, 366, 437, 985
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	9 cut(s)	43, 59, 262, 360, 451, 482, 625, 679, 731
Mly113I	GGCGCC	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	3 cut(s)	164, 602, 933
MslI	CAYNNNNRTG	1 cut(s)	870
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	308, 965
MvaI	CCWGG	2 cut(s)	308, 965
MwoI	GCNNNNNNNGC	2 cut(s)	303, 418
NaeI	GCCGGC	1 cut(s)	469
NarI	GGCGCC	1 cut(s)	295
NdeII	GATC	4 cut(s)	118, 132, 139, 891
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	1 cut(s)	1000
NlaIV	GGNNCC	3 cut(s)	296, 351, 805
NmuCI	GTSAC	2 cut(s)	650, 982
OliI	CACNNNNGTG	1 cut(s)	870
PasI	CCCWGGG	1 cut(s)	964
PciSI	GCTCTTC	1 cut(s)	998
PdiI	GCCGGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	740, 928
PkrI	GCNGC	3 cut(s)	411, 423, 426
PluTI	GGCGCC	1 cut(s)	298
PsiI	TTATAA	1 cut(s)	366
Psp1406I	AACGTT	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	306, 963
PspEI	GGTNACC	2 cut(s)	185, 650
PspGI	CCWGG	2 cut(s)	306, 963
PspN4I	GGNNCC	3 cut(s)	296, 351, 805
PspPI	GGNCC	3 cut(s)	349, 803, 947
PstNI	CAGNNNCTG	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	239, 685
RsaNI	GTAC	2 cut(s)	238, 684
RseI	CAYNNNNRTG	1 cut(s)	870
SapI	GCTCTTC	1 cut(s)	998
SaqAI	TTAA	3 cut(s)	164, 602, 933
SatI	GCNGC	3 cut(s)	410, 422, 425
Sau3AI	GATC	4 cut(s)	118, 132, 139, 891
Sau96I	GGNCC	3 cut(s)	349, 803, 947
ScrFI	CCNGG	2 cut(s)	308, 965
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	512
SfoI	GGCGCC	1 cut(s)	296
SinI	GGWCC	2 cut(s)	349, 803
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	9 cut(s)	43, 59, 262, 360, 451, 482, 625, 679, 731
SsiI	CCGC	1 cut(s)	471
SspDI	GGCGCC	1 cut(s)	294
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	306, 963
TaaI	ACNGT	3 cut(s)	242, 496, 921
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	131, 326
TasI	AATT	9 cut(s)	43, 59, 262, 360, 451, 482, 625, 679, 731
TatI	WGTACW	2 cut(s)	237, 683
TfiI	GAWTC	2 cut(s)	740, 928
Tru1I	TTAA	3 cut(s)	164, 602, 933
Tru9I	TTAA	3 cut(s)	164, 602, 933
TscAI	CASTG	5 cut(s)	58, 86, 397, 565, 636
TseFI	GTSAC	2 cut(s)	650, 982
TseI	GCWGC	3 cut(s)	409, 421, 424
Tsp45I	GTSAC	2 cut(s)	650, 982
TspDTI	ATGAA	4 cut(s)	20, 141, 219, 985
TspRI	CASTG	5 cut(s)	58, 86, 397, 565, 636
VpaK11BI	GGWCC	2 cut(s)	349, 803
XapI	RAATTY	2 cut(s)	59, 482
XmiI	GTMKAC	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.