pycom12g11010

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0018903
Physical Location & Seq
Forward (+)
13080800 .. 13082172
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g11010.2

Sequence Viewer

Length: 1329 bp
ATGATGGAGCATTCACGTACTATTTGTAATCTGGTTTTGTTGAAATTCCTTCATGGCTTCATTCTCTTCATCTTATGCATGATGAGCACATGTCCGGAATCTGCAGCATTTCCCAGCTCTACCCTGCTTGGAAACGAATCTGATCGATCTTGTGTCATGAGCTCGTGGAATCATTCCGTCCACTTCTGCAGTTGGGTAGGCATTACATGCCACCGTGCCACCCAAAGAGTCTTGATTCTGGACTTGGAAGATAAACAATTGGTAGGCTCCATTCCACCTTCCATTGGGAATCTTACTCGTCTACGTGAAATAAGCTTGGCAAGCAACAAATTTCATGGTGAAATTCCTCAAGAACTGGGTCGGCTACGTACCCTGGAAAGTCTCAACCTGTCTTCCAATTCTTTAGGAGGGAAAATTCCGACTAATATGTCCCACTGTACTCAACTAAGAGTTTTCGATCTTTTTTCCAATAAGATTATTGGGTCGATTCCACGCCAACTCAGTTCATGGTTGAGTTTGACTACTCTCAAACTTGTAGGAAATAATCTCAGTGGAACCATCCCAGGTTGGATAGGAAACTTTTCTTCTTTGAGAGGTCTTGGTCTTGGCCGCAACAATTTTCAAGGAAGCATACCAAATGAGCTTGTGCGTATAACAACCTTGCAGACATTCCTCGTTGGGGACAATAATTTGTCTGGTATGCTCCCTTCTTCAATTTATAATATTTCTTCCATACACTCGTTCGGTGTTCAGATAAACCAATTACATGGAGAGCTACCACCAAATCTCGGCATCATGCTTCCTAATCTCGTACTATTTTTATGTGATATAAACAATTTCACAGGAAATATTCCTGTATCATTGTCAAATGCTTCTAGACTTCAGAGGACTGATTTTTCTTCAAATGGCTTCACGGGGACAGTCCCTGGAGAAAGTCTCGGAAGCTTGCGAAGCTTAATTTCGCTAAACTTTGGAGAAAATCGACTGGGAAATGGAAAACTTGGTGATTTGAGTTTTCTCAATTTCTTGACTAATTGTACTAGTCTTAAAAAATTGGGTCTTGGCTATAATCATTTTGGGGGAGAAATCCCGAGATCCATAGCCAACCTTTCGACCCAACTACAAACTCTTTATCTAGGGGTTAATTTGTTACATGGAAGCCTCCCAAACGGCATTGGAAATCTTATAAACCTTGCCGATCTAGTTATGATTGATAACTATTTGGCGGGTGTTGTCCCCGAAGAAATTGGGAAGCTCAAGAAGATGAAGAGACTAGCTTTGAGTGCTAACAAATTTTCCGGCCAATTCCATCTTCCCTTGGTAATATAA

Protein Analysis

443

Amino Acids

48.16

Weight (kDa)

9.1

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018903)

Species Orthologous Gene IDs
malus_domestica MD04G1150000.v1.1 MD04G1150200.v1.1 MD05G1075900.v1.1
prunus_persica Prupe.6G248200_v2.0.a1
pyrus_communis pycom12g11010
rosa_chinensis RchiOBHm_Chr3g0463441 RchiOBHm_Chr4g0408581
rosa_multiflora Rmu_sc0001053.1_g000011
rosa_roxburghii Rroxscaffold_4G00322890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 720, 1187
AasI GACNNNNNNGTC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 301
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 2 cut(s) 610, 1226
AclWI GGATC 1 cut(s) 1089
AcoI YGGCCR 2 cut(s) 607, 1300
AcsI RAATTY 5 cut(s) 44, 329, 342, 414, 1292
AcuI CTGAAG 1 cut(s) 866
AfaI GTAC 5 cut(s) 19, 370, 439, 813, 1039
AfiI CCNNNNNNNGG 3 cut(s) 284, 679, 788
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 4 cut(s) 43, 623, 714, 903
AhlI ACTAGT 1 cut(s) 1040
AjnI CCWGG 3 cut(s) 372, 562, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 1296, 1328
AluBI AGCT 9 cut(s) 117, 162, 315, 643, 775, 945, 954, 1255, 1277
AluI AGCT 9 cut(s) 117, 162, 315, 643, 775, 945, 954, 1255, 1277
Alw21I GWGCWC 2 cut(s) 89, 164
Alw26I GTCTC 3 cut(s) 386, 941, 1264
AlwI GGATC 1 cut(s) 1089
AlwNI CAGNNNCTG 1 cut(s) 926
Ama87I CYCGRG 1 cut(s) 1090
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 2 cut(s) 607, 1300
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 5 cut(s) 44, 329, 342, 414, 1292
Asp700I GAANNNNTTC 1 cut(s) 580
AsuHPI GGTGA 2 cut(s) 350, 1016
AvaI CYCGRG 1 cut(s) 1090
BanII GRGCYC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 691, 723
BauI CACGAG 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 89, 164
BbvI GCAGC 1 cut(s) 116
BccI CCATC 2 cut(s) 566, 1317
BceAI ACGGC 1 cut(s) 1186
BciT130I CCWGG 3 cut(s) 374, 564, 927
BcoDI GTCTC 3 cut(s) 386, 941, 1264
BcuI ACTAGT 1 cut(s) 1040
BfaI CTAG 5 cut(s) 876, 1041, 1136, 1202, 1274
BfmI CTRYAG 2 cut(s) 102, 187
BisI GCNGC 2 cut(s) 105, 610
BlsI GCNGC 2 cut(s) 106, 611
Bme1390I CCNGG 3 cut(s) 374, 564, 927
BmeT110I CYCGRG 1 cut(s) 1090
BmiI GGNNCC 2 cut(s) 268, 556
BmrFI CCNGG 3 cut(s) 374, 564, 927
BmrI ACTGGG 2 cut(s) 365, 995
BmsI GCATC 1 cut(s) 801
BmuI ACTGGG 2 cut(s) 365, 995
BpiI GAAGAC 1 cut(s) 384
BplI GAGNNNNNCTC 2 cut(s) 921, 953
BpmI CTGGAG 1 cut(s) 948
BpuEI CTTGAG 2 cut(s) 333, 1241
Bsa29I ATCGAT 1 cut(s) 145
BsaAI YACGTR 3 cut(s) 17, 305, 368
BsaJI CCNNGG 4 cut(s) 372, 562, 925, 1317
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 679, 788
Bse1I ACTGG 2 cut(s) 360, 990
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 3 cut(s) 374, 564, 927
BseCI ATCGAT 1 cut(s) 145
BseDI CCNNGG 4 cut(s) 372, 562, 925, 1317
BseGI GGATG 1 cut(s) 558
BseLI CCNNNNNNNGG 3 cut(s) 284, 679, 788
BseMII CTCAG 2 cut(s) 514, 562
BseNI ACTGG 2 cut(s) 360, 990
BseXI GCAGC 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 2 cut(s) 609, 1302
BshVI ATCGAT 1 cut(s) 145
BsiHKAI GWGCWC 2 cut(s) 89, 164
BsiHKCI CYCGRG 1 cut(s) 1090
BsiSI CCGG 2 cut(s) 95, 1299
BslFI GGGAC 5 cut(s) 415, 695, 908, 931, 1220
BslI CCNNNNNNNGG 3 cut(s) 284, 679, 788
BsmAI GTCTC 3 cut(s) 386, 941, 1264
BsmFI GGGAC 5 cut(s) 415, 695, 908, 931, 1220
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 609, 1302
BsoBI CYCGRG 1 cut(s) 1090
Bsp1286I GDGCHC 2 cut(s) 89, 164
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 5 cut(s) 142, 146, 457, 1094, 1198
BspACI CCGC 2 cut(s) 610, 1226
BspANI GGCC 2 cut(s) 609, 1302
BspCNI CTCAG 2 cut(s) 513, 561
BspDI ATCGAT 1 cut(s) 145
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 268, 556
BspMAI CTGCAG 2 cut(s) 106, 191
BspPI GGATC 1 cut(s) 1089
BsrI ACTGG 2 cut(s) 360, 990
BssECI CCNNGG 4 cut(s) 372, 562, 925, 1317
BssMI GATC 5 cut(s) 142, 146, 457, 1094, 1198
BssSI CACGAG 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 1317
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 3 cut(s) 374, 564, 927
Bst4CI ACNGT 3 cut(s) 215, 437, 922
Bst6I CTCTTC 2 cut(s) 71, 1262
BstAPI GCANNNNNTGC 1 cut(s) 207
BstBAI YACGTR 3 cut(s) 17, 305, 368
BstC8I GCNNGC 2 cut(s) 322, 947
BstDEI CTNAG 3 cut(s) 446, 500, 548
BstF5I GGATG 1 cut(s) 558
BstKTI GATC 5 cut(s) 145, 149, 460, 1097, 1201
BstMAI GTCTC 3 cut(s) 386, 941, 1264
BstMBI GATC 5 cut(s) 142, 146, 457, 1094, 1198
BstMWI GCNNNNNNNGC 5 cut(s) 84, 207, 321, 951, 1283
BstNI CCWGG 3 cut(s) 374, 564, 927
BstNSI RCATGY 2 cut(s) 93, 210
BstSCI CCNGG 3 cut(s) 372, 562, 925
BstSFI CTRYAG 2 cut(s) 102, 187
BstSNI TACGTA 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 1094
BstXI CCANNNNNNTGG 1 cut(s) 767
BstYI RGATCY 1 cut(s) 1094
Bsu15I ATCGAT 1 cut(s) 145
BsuRI GGCC 2 cut(s) 609, 1302
BsuTUI ATCGAT 1 cut(s) 145
BtsCI GGATG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 433, 556
Cac8I GCNNGC 2 cut(s) 322, 947
CaiI CAGNNNCTG 1 cut(s) 926
CciI TCATGA 1 cut(s) 156
ClaI ATCGAT 1 cut(s) 145
Csp6I GTAC 5 cut(s) 18, 369, 438, 812, 1038
CviQI GTAC 5 cut(s) 18, 369, 438, 812, 1038
DdeI CTNAG 3 cut(s) 446, 500, 548
DpnI GATC 5 cut(s) 144, 148, 459, 1096, 1200
DpnII GATC 5 cut(s) 142, 146, 457, 1094, 1198
DrdI GACNNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 427
EaeI YGGCCR 2 cut(s) 607, 1300
Eam1104I CTCTTC 2 cut(s) 71, 1262
EarI CTCTTC 2 cut(s) 71, 1262
Ecl136II GAGCTC 1 cut(s) 162
Eco105I TACGTA 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 1317
Eco24I GRGCYC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 866
Eco88I CYCGRG 1 cut(s) 1090
EcoICRI GAGCTC 1 cut(s) 162
EcoRII CCWGG 3 cut(s) 372, 562, 925
EcoT14I CCWWGG 1 cut(s) 1317
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 1317
FaqI GGGAC 5 cut(s) 415, 695, 908, 931, 1220
FauI CCCGC 1 cut(s) 1219
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 105, 610
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 105, 610
FspBI CTAG 5 cut(s) 876, 1041, 1136, 1202, 1274
GluI GCNGC 2 cut(s) 105, 610
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 948
HaeIII GGCC 2 cut(s) 609, 1302
HapII CCGG 2 cut(s) 95, 1299
HindIII AAGCTT 3 cut(s) 313, 943, 952
HinfI GANTC 7 cut(s) 98, 137, 169, 228, 235, 289, 487
HpaII CCGG 2 cut(s) 95, 1299
HphI GGTGA 2 cut(s) 350, 1016
Hpy166II GTNNAC 2 cut(s) 181, 302
Hpy188I TCNGA 5 cut(s) 142, 420, 753, 885, 941
Hpy188III TCNNGA 9 cut(s) 95, 157, 232, 239, 350, 876, 1027, 1090, 1258
Hpy8I GTNNAC 2 cut(s) 181, 302
HpyAV CCTTC 3 cut(s) 59, 288, 717
HpyCH4III ACNGT 3 cut(s) 215, 437, 922
HpyCH4IV ACGT 3 cut(s) 16, 304, 367
HpyCH4V TGCA 4 cut(s) 78, 104, 189, 664
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 207, 321, 951, 1283
HpyF3I CTNAG 3 cut(s) 446, 500, 548
HpySE526I ACGT 3 cut(s) 16, 304, 367
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 5 cut(s) 142, 146, 457, 1094, 1198
LmnI GCTCC 3 cut(s) 7, 272, 708
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 801
MaeI CTAG 5 cut(s) 876, 1041, 1136, 1202, 1274
MaeII ACGT 3 cut(s) 16, 304, 367
MaeIII GTNAC 1 cut(s) 1149
MalI GATC 5 cut(s) 144, 148, 459, 1096, 1200
MboI GATC 5 cut(s) 142, 146, 457, 1094, 1198
MfeI CAATTG 1 cut(s) 257
MflI RGATCY 1 cut(s) 1094
MhlI GDGCHC 2 cut(s) 89, 164
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 2 cut(s) 443, 548
MnlI CCTC 6 cut(s) 357, 401, 587, 683, 879, 1172
Mph1103I ATGCAT 1 cut(s) 80
MroI TCCGGA 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 580
MseI TTAA 3 cut(s) 956, 1047, 1143
MspI CCGG 2 cut(s) 95, 1299
MspR9I CCNGG 3 cut(s) 374, 564, 927
MunI CAATTG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 3 cut(s) 374, 564, 927
MwoI GCNNNNNNNGC 5 cut(s) 84, 207, 321, 951, 1283
NdeII GATC 5 cut(s) 142, 146, 457, 1094, 1198
NlaIV GGNNCC 2 cut(s) 268, 556
NmeAIII GCCGAG 1 cut(s) 768
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 2 cut(s) 93, 210
PagI TCATGA 1 cut(s) 156
PciI ACATGT 1 cut(s) 89
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 580
PfeI GAWTC 6 cut(s) 98, 137, 169, 235, 289, 487
PkrI GCNGC 2 cut(s) 106, 611
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Ppu21I YACGTR 3 cut(s) 17, 305, 368
PscI ACATGT 1 cut(s) 89
PsiI TTATAA 2 cut(s) 720, 1187
Psp124BI GAGCTC 1 cut(s) 164
Psp6I CCWGG 3 cut(s) 372, 562, 925
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 3 cut(s) 372, 562, 925
PspN4I GGNNCC 2 cut(s) 268, 556
PstI CTGCAG 2 cut(s) 106, 191
PstNI CAGNNNCTG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 1094
RsaI GTAC 5 cut(s) 19, 370, 439, 813, 1039
RsaNI GTAC 5 cut(s) 18, 369, 438, 812, 1038
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 956, 1047, 1143
SatI GCNGC 2 cut(s) 105, 610
Sau3AI GATC 5 cut(s) 142, 146, 457, 1094, 1198
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 3 cut(s) 374, 564, 927
SduI GDGCHC 2 cut(s) 89, 164
SfaNI GCATC 1 cut(s) 801
SfcI CTRYAG 2 cut(s) 102, 187
SmlI CTYRAG 2 cut(s) 348, 1256
SmoI CTYRAG 2 cut(s) 348, 1256
SnaBI TACGTA 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 1040
SsiI CCGC 2 cut(s) 610, 1226
SspI AATATT 2 cut(s) 724, 850
SspMI CTAG 5 cut(s) 876, 1041, 1136, 1202, 1274
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 372, 562, 925
StyI CCWWGG 1 cut(s) 1317
TaaI ACNGT 3 cut(s) 215, 437, 922
TaiI ACGT 3 cut(s) 19, 307, 370
TaqI TCGA 5 cut(s) 145, 456, 485, 982, 1112
TatI WGTACW 2 cut(s) 437, 1037
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 6 cut(s) 98, 137, 169, 235, 289, 487
Tru1I TTAA 3 cut(s) 956, 1047, 1143
Tru9I TTAA 3 cut(s) 956, 1047, 1143
TscAI CASTG 2 cut(s) 440, 556
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 6 cut(s) 41, 49, 58, 323, 495, 1280
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 2 cut(s) 440, 556
XapI RAATTY 5 cut(s) 44, 329, 342, 414, 1292
XbaI TCTAGA 1 cut(s) 875
XceI RCATGY 2 cut(s) 93, 210
XmiI GTMKAC 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 580
XspI CTAG 5 cut(s) 876, 1041, 1136, 1202, 1274
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.