Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018903

Physical Location & Seq

Genomic Coordinates Reverse (-)

53498051 .. 53498706

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAACCATATCACCATACATTGGCAACCTCTCCTTTCTCGGGAACTTCAGCCTTTACAACAACAGCTTCTTTGGCAAGATTCCGCAACAAGTCGAATATTTATTCCGACCGCGACGTCTCAATCTCGGTACCAACATGTTGGAGGGAGGAATTCCAGTCAACGACCTTGTGTGCGGAACCGAGCTTCTTAGGTATTGGAGAAAACCGCCTTACCAAGCAAAATTCCTTCGGAGAATGGGTCATTGAGGAAGCTTGCGGTTCTCAATCTAGAGGAAAACAATCGACGGGAGGCATCCCACCTTCCTTGGGAAATCTTTCATCAATCACACAGCTGTCCTTTGCATTTAACAATTTGGTGGGCAACGTACCGGAGGAAATGGACCGACCGAGAAGCTTATCGACTTCGGAATTGGTCGCAATAATCTCTCTGGGCAGTATTCCACCCGATATAGGCCTAAACATGCCTAATTTCGAAACAATGTACTTCGGCGGAAATGAATTCTCTGGACAAATTCCAGCTTCATTTTCTAATGCTTCTCAGCTTCGGAAGCTTGATGTTTCGGAGAATAATTTTGTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

194

Amino Acids

21.08

Weight (kDa)

4.92

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018903)

Species	Orthologous Gene IDs
malus_domestica	MD04G1150000.v1.1 MD04G1150200.v1.1 MD05G1075900.v1.1
prunus_persica	Prupe.6G248200_v2.0.a1
pyrus_communis	pycom12g11010
rosa_chinensis	RchiOBHm_Chr3g0463441 RchiOBHm_Chr4g0408581
rosa_multiflora	Rmu_sc0001053.1_g000011
rosa_roxburghii	Rroxscaffold_4G00322890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AatII	GACGTC	1 cut(s)	120
Acc65I	GGTACC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	85, 112, 176, 208, 258, 492
AcsI	RAATTY	4 cut(s)	152, 223, 500, 513
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	3 cut(s)	132, 369, 485
AfiI	CCNNNNNNNGG	4 cut(s)	22, 41, 308, 452
AflIII	ACRYGT	1 cut(s)	137
AluBI	AGCT	8 cut(s)	68, 186, 254, 334, 396, 521, 544, 553
AluI	AGCT	8 cut(s)	68, 186, 254, 334, 396, 521, 544, 553
Alw26I	GTCTC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	454
ApoI	RAATTY	4 cut(s)	152, 223, 500, 513
Asp700I	GAANNNNTTC	1 cut(s)	316
Asp718I	GGTACC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	5
AsuII	TTCGAA	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	3 cut(s)	6, 132, 180
BmsI	GCATC	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 41, 308, 452
Bse1I	ACTGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	4 cut(s)	22, 41, 308, 452
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	2 cut(s)	112, 389
BshFI	GGCC	1 cut(s)	456
BshNI	GGYRCC	1 cut(s)	130
BsiEI	CGRYCG	2 cut(s)	112, 389
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	4 cut(s)	22, 41, 308, 452
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	474
BspACI	CCGC	6 cut(s)	85, 112, 176, 208, 258, 492
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	6, 132, 180
BspT104I	TTCGAA	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	306
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	190, 540
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	124
BstMCI	CGRYCG	2 cut(s)	112, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 550
BstNSI	RCATGY	2 cut(s)	141, 466
BstUI	CGCG	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	131, 368, 484
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	2 cut(s)	138, 463
CviQI	GTAC	3 cut(s)	131, 368, 484
DdeI	CTNAG	2 cut(s)	190, 540
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	40
EcoRI	GAATTC	2 cut(s)	152, 500
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	141, 466
FaiI	YATR	5 cut(s)	10, 18, 139, 452, 464
FatI	CATG	2 cut(s)	137, 462
FokI	GGATG	1 cut(s)	281
FspBI	CTAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	141, 466
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HindIII	AAGCTT	3 cut(s)	252, 394, 551
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	5 cut(s)	109, 233, 409, 549, 565
Hpy188III	TCNNGA	3 cut(s)	42, 270, 507
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	2 cut(s)	119, 289
HpyAV	CCTTC	2 cut(s)	238, 312
HpyCH4IV	ACGT	2 cut(s)	117, 366
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 550
HpyF3I	CTNAG	2 cut(s)	190, 540
HpySE526I	ACGT	2 cut(s)	117, 366
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	141, 466
KpnI	GGTACC	1 cut(s)	134
LpnPI	CCDG	5 cut(s)	170, 384, 416, 492, 531
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	117, 366
MluCI	AATT	8 cut(s)	152, 223, 352, 410, 469, 500, 513, 571
MmeI	TCCRAC	2 cut(s)	122, 132
MnlI	CCTC	7 cut(s)	40, 138, 142, 241, 266, 284, 367
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	74, 550
NlaIII	CATG	2 cut(s)	141, 466
NlaIV	GGNNCC	3 cut(s)	6, 132, 180
NspI	RCATGY	2 cut(s)	141, 466
NspV	TTCGAA	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	456
PciI	ACATGT	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	81
PflMI	CCANNNNNTGG	1 cut(s)	22
PscI	ACATGT	1 cut(s)	137
PspN4I	GGNNCC	3 cut(s)	6, 132, 180
PspPI	GGNCC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	132, 369, 485
RsaNI	GTAC	3 cut(s)	131, 368, 484
SaqAI	TTAA	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	1 cut(s)	382
Sse9I	AATT	8 cut(s)	152, 223, 352, 410, 469, 500, 513, 571
SseBI	AGGCCT	1 cut(s)	456
SsiI	CCGC	6 cut(s)	85, 112, 176, 208, 258, 492
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	306
TaiI	ACGT	2 cut(s)	120, 369
TaqI	TCGA	4 cut(s)	95, 284, 401, 474
TaqII	GACCGA	2 cut(s)	399, 403
TasI	AATT	8 cut(s)	152, 223, 352, 410, 469, 500, 513, 571
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TspDTI	ATGAA	3 cut(s)	309, 513, 513
Van91I	CCANNNNNTGG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	4 cut(s)	152, 223, 500, 513
XbaI	TCTAGA	1 cut(s)	269
XceI	RCATGY	2 cut(s)	141, 466
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	1 cut(s)	270
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.