MD04G1168600.v1.1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015133
Physical Location & Seq
Forward (+)
25906970 .. 25907392
423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1168600.v1.1.491

Sequence Viewer

Length: 423 bp
ATGCAGAACAAGGCAATTGTTGAAGCTCTCTACAAGGCATTGGCACAGGGCAAAACAGACACAGTGGGAAAGCTTCTAGCCAGTGACCTAGAATGGTGGTTCCATGGCCCCCCAAAGAGCCAGCACATGATGCGCGTGCTCACAGGGAAGTCCAGCCACACTGACTTCAGGTTCGAGCCCAGAAGCATCACAGAGATTGGAGATGGTGTGATCATTGCCGAGGGATGGGAAGGGGCCAAGGCCTACTGGGTCCATGCGTGGACCCTCAAAGATGGGTTGATTACGCAGTTCAGGGAGTATTTTAACACGTGGCTGACTGTGAGGGATCTGAAGCTGGAGGGGTGGGAGAGCTTCACTGTGTGGGAGAGCATGCCGAATGACCTGTTCCACCGCTCCTTGCCAGCCCTATTGCTTGCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

141

Amino Acids

16.12

Weight (kDa)

6.19

Isoelectric Point (pI)

19.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 44 - 140 5.1e-31 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01740
fragaria_vesca FvH4_6g10320
malus_domestica MD04G1168600.v1.1 MD12G1182200.v1.1
prunus_persica Prupe.6G286900_v2.0.a1
pyrus_communis pycom12g17130
rosa_chinensis RchiOBHm_Chr3g0461091
rosa_laevigata RLG00000024953
rosa_multiflora Rmu_co8398679.1_g000001 Rmu_sc0001521.1_g000057
rosa_roxburghii Rroxscaffold_6G00418860
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3BG109800 Rh3CG111300 Rh3DG111500
rosa_wichuraiana Rw3G009040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 393
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 391
AclWI GGATC 1 cut(s) 333
AcuI CTGAAG 2 cut(s) 151, 350
AcvI CACGTG 1 cut(s) 309
AdeI CACNNNGTG 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 4 cut(s) 26, 73, 334, 351
AluI AGCT 4 cut(s) 26, 73, 334, 351
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 1 cut(s) 333
AoxI GGCC 3 cut(s) 106, 234, 240
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 4 cut(s) 107, 234, 250, 261
AvaII GGWCC 2 cut(s) 250, 261
BanII GRGCYC 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 3 cut(s) 197, 219, 266
BclI TGATCA 1 cut(s) 210
BfaI CTAG 2 cut(s) 77, 89
Bme18I GGWCC 2 cut(s) 250, 261
BmgT120I GGNCC 4 cut(s) 107, 234, 250, 261
BmiI GGNNCC 5 cut(s) 101, 109, 235, 251, 263
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 2 cut(s) 120, 195
BmuI ACTGGG 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 103, 219, 237
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 81, 251
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 3 cut(s) 103, 219, 237
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 81, 251
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 108, 236, 242
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 225
BsnI GGCC 3 cut(s) 108, 236, 242
Bsp1286I GDGCHC 2 cut(s) 141, 180
Bsp143I GATC 2 cut(s) 210, 325
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 1 cut(s) 391
BspANI GGCC 3 cut(s) 108, 236, 242
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 5 cut(s) 101, 109, 235, 251, 263
BspPI GGATC 1 cut(s) 333
BsrBI CCGCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 2 cut(s) 81, 251
BssECI CCNNGG 3 cut(s) 103, 219, 237
BssMI GATC 2 cut(s) 210, 325
BssT1I CCWWGG 2 cut(s) 103, 237
Bst4CI ACNGT 3 cut(s) 64, 319, 358
BstAPI GCANNNNNTGC 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 5 cut(s) 122, 137, 371, 402, 414
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 230
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 213, 328
BstMBI GATC 2 cut(s) 210, 325
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 373
BstUI CGCG 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 3 cut(s) 108, 236, 242
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 4 cut(s) 69, 88, 159, 354
Cac8I GCNNGC 5 cut(s) 122, 137, 371, 402, 414
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 4 cut(s) 107, 234, 250, 261
CviAII CATG 4 cut(s) 104, 127, 254, 370
DpnI GATC 2 cut(s) 212, 327
DpnII GATC 2 cut(s) 210, 325
DraIII CACNNNGTG 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 103, 237
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 250, 261
Eco57I CTGAAG 2 cut(s) 151, 350
Eco72I CACGTG 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 103, 237
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 2 cut(s) 103, 237
FaeI CATG 4 cut(s) 107, 130, 257, 373
FaiI YATR 4 cut(s) 105, 128, 255, 371
FatI CATG 4 cut(s) 103, 126, 253, 369
FbaI TGATCA 1 cut(s) 210
FokI GGATG 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 180
FspBI CTAG 2 cut(s) 77, 89
GlaI GCGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 3 cut(s) 108, 236, 242
HhaI GCGC 1 cut(s) 135
Hin1II CATG 4 cut(s) 107, 130, 257, 373
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 3 cut(s) 64, 319, 358
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 4 cut(s) 107, 130, 257, 373
HspAI GCGC 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 2 cut(s) 210, 325
LmnI GCTCC 1 cut(s) 398
LweI GCATC 2 cut(s) 120, 195
MaeI CTAG 2 cut(s) 77, 89
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 212, 327
MbiI CCGCTC 1 cut(s) 393
MboI GATC 2 cut(s) 210, 325
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 2 cut(s) 141, 180
MluCI AATT 1 cut(s) 15
MnlI CCTC 4 cut(s) 214, 275, 315, 331
MseI TTAA 1 cut(s) 303
MunI CAATTG 1 cut(s) 15
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 130
NcoI CCATGG 1 cut(s) 103
NdeII GATC 2 cut(s) 210, 325
NlaIII CATG 4 cut(s) 107, 130, 257, 373
NlaIV GGNNCC 5 cut(s) 101, 109, 235, 251, 263
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 1 cut(s) 373
PaeI GCATGC 1 cut(s) 373
PceI AGGCCT 1 cut(s) 242
PmaCI CACGTG 1 cut(s) 309
PmlI CACGTG 1 cut(s) 309
Ppu21I YACGTR 1 cut(s) 309
PspCI CACGTG 1 cut(s) 309
PspN4I GGNNCC 5 cut(s) 101, 109, 235, 251, 263
PspPI GGNCC 4 cut(s) 107, 234, 250, 261
PsuI RGATCY 1 cut(s) 325
SaqAI TTAA 1 cut(s) 303
Sau3AI GATC 2 cut(s) 210, 325
Sau96I GGNCC 4 cut(s) 107, 234, 250, 261
SduI GDGCHC 2 cut(s) 141, 180
SetI ASST 8 cut(s) 28, 75, 90, 173, 311, 336, 353, 384
SfaNI GCATC 2 cut(s) 120, 195
SinI GGWCC 2 cut(s) 250, 261
SphI GCATGC 1 cut(s) 373
Sse9I AATT 1 cut(s) 15
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 1 cut(s) 391
SspMI CTAG 2 cut(s) 77, 89
StuI AGGCCT 1 cut(s) 242
StyI CCWWGG 2 cut(s) 103, 237
TaaI ACNGT 3 cut(s) 64, 319, 358
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 15
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 4 cut(s) 69, 88, 166, 361
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspRI CASTG 4 cut(s) 69, 88, 166, 361
VpaK11BI GGWCC 2 cut(s) 250, 261
XceI RCATGY 1 cut(s) 373
XspI CTAG 2 cut(s) 77, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.