Rh3CG111300

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015133
Physical Location & Seq
Forward (+)
8896984 .. 8898529
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG111300.1

Sequence Viewer

Length: 306 bp
ATGATGCGGGTGCTCACAGGGGATTCCAGCCACGTTGGCTTCAAGTTCGAGCCGAGAAGCGTAACGGAGATTGGCGACTACTGTGTGATTGCTGAGGGCTGGGAAGGAGCTCAGGCTTATTGGGTGCATGTGTGGACGATCAAGGATGGTTTGATCACTCAGTTCAGGGAGTATTTCAACACGTGGCTGACAGTGAGGGATCTGAAGCCGCTAGGGTGGAAGGAGAGTAAGAGCTTCACTGTGTGGCAGAGCATGCCAAGGGACCTGTTCCACCGTTCTTTGCCAAGCCTTCTCCTAGCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

101

Amino Acids

11.81

Weight (kDa)

6.82

Isoelectric Point (pI)

28.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 2 - 101 1.3e-33 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01740
fragaria_vesca FvH4_6g10320
malus_domestica MD04G1168600.v1.1 MD12G1182200.v1.1
prunus_persica Prupe.6G286900_v2.0.a1
pyrus_communis pycom12g17130
rosa_chinensis RchiOBHm_Chr3g0461091
rosa_laevigata RLG00000024953
rosa_multiflora Rmu_co8398679.1_g000001 Rmu_sc0001521.1_g000057
rosa_roxburghii Rroxscaffold_6G00418860
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3BG109800 Rh3CG111300 Rh3DG111500
rosa_wichuraiana Rw3G009040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 7, 209
AclWI GGATC 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 224
AcvI CACGTG 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 2 cut(s) 43, 178
AluBI AGCT 3 cut(s) 110, 234, 299
AluI AGCT 3 cut(s) 110, 234, 299
Alw21I GWGCWC 2 cut(s) 15, 112
AlwI GGATC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 262
AvaII GGWCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 112
BbrPI CACGTG 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 15, 112
BbvCI CCTCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 140
BclI TGATCA 1 cut(s) 153
BfaI CTAG 2 cut(s) 212, 296
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 263
Bpu10I CCTNAGC 2 cut(s) 93, 111
BsaAI YACGTR 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 84, 125, 173
BseYI CCCAGC 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 15, 112
BslFI GGGAC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 15, 112
Bsp143I GATC 3 cut(s) 138, 153, 199
BspACI CCGC 2 cut(s) 7, 209
BspCNI CTCAG 3 cut(s) 85, 124, 172
BspLI GGNNCC 1 cut(s) 263
BspPI GGATC 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 3 cut(s) 138, 153, 199
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 4 cut(s) 83, 193, 241, 275
BstAPI GCANNNNNTGC 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 93, 111, 159
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 3 cut(s) 141, 156, 202
BstMBI GATC 3 cut(s) 138, 153, 199
BstMWI GCNNNNNNNGC 2 cut(s) 36, 253
BstNSI RCATGY 2 cut(s) 131, 256
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 198, 237
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 262
CviAII CATG 2 cut(s) 128, 253
DdeI CTNAG 3 cut(s) 93, 111, 159
DpnI GATC 3 cut(s) 140, 155, 201
DpnII GATC 3 cut(s) 138, 153, 199
DraIII CACNNNGTG 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 2 cut(s) 131, 256
FaiI YATR 2 cut(s) 129, 254
FaqI GGGAC 1 cut(s) 275
FatI CATG 2 cut(s) 127, 252
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 2 cut(s) 212, 296
GluI GCNGC 1 cut(s) 209
GsaI CCCAGC 1 cut(s) 103
Hin1II CATG 2 cut(s) 131, 256
HinfI GANTC 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 3 cut(s) 98, 214, 299
HpyCH4III ACNGT 4 cut(s) 83, 193, 241, 275
HpyCH4IV ACGT 2 cut(s) 33, 182
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 253
HpyF3I CTNAG 3 cut(s) 93, 111, 159
HpySE526I ACGT 2 cut(s) 33, 182
Hsp92II CATG 2 cut(s) 131, 256
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 3 cut(s) 138, 153, 199
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 6 cut(s) 3, 40, 85, 98, 151, 278
MaeI CTAG 2 cut(s) 212, 296
MaeII ACGT 2 cut(s) 33, 182
MaeIII GTNAC 1 cut(s) 61
MalI GATC 3 cut(s) 140, 155, 201
MboI GATC 3 cut(s) 138, 153, 199
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 15, 112
MnlI CCTC 2 cut(s) 88, 189
MwoI GCNNNNNNNGC 2 cut(s) 36, 253
NdeII GATC 3 cut(s) 138, 153, 199
NlaIII CATG 2 cut(s) 131, 256
NlaIV GGNNCC 1 cut(s) 263
NmeAIII GCCGAG 1 cut(s) 78
NspI RCATGY 2 cut(s) 131, 256
PaeI GCATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 210
PmaCI CACGTG 1 cut(s) 183
PmlI CACGTG 1 cut(s) 183
Ppu21I YACGTR 1 cut(s) 183
PpuMI RGGWCCY 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 262
PspCI CACGTG 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 1 cut(s) 199
SacI GAGCTC 1 cut(s) 112
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 3 cut(s) 138, 153, 199
Sau96I GGNCC 1 cut(s) 262
SduI GDGCHC 2 cut(s) 15, 112
SetI ASST 6 cut(s) 36, 112, 185, 236, 267, 301
SinI GGWCC 1 cut(s) 262
SphI GCATGC 1 cut(s) 256
SsiI CCGC 2 cut(s) 7, 209
SspMI CTAG 2 cut(s) 212, 296
SstI GAGCTC 1 cut(s) 112
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 4 cut(s) 83, 193, 241, 275
TaiI ACGT 2 cut(s) 36, 185
TaqI TCGA 1 cut(s) 48
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 1 cut(s) 23
TscAI CASTG 2 cut(s) 198, 244
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 198, 244
VpaK11BI GGWCC 1 cut(s) 262
XceI RCATGY 2 cut(s) 131, 256
XspI CTAG 2 cut(s) 212, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.