Rorug03G0048100

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013031
Physical Location & Seq
Reverse (-)
3742159 .. 3744691
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0048100.1

Sequence Viewer

Length: 738 bp
ATGGGCACTCTCATGCATTGCCTATCATACAAACCCCAAGTGAGATTTCCCACTTTTGGAATCACACTATGCTCATCTTCTGAGGTTAGTGTGTCAAGGCAGCAAGTTTTGAAGCAAGTGGATAAGGAGTTGGCTAAAGGAGATGAGAGGGCAGCTCTTTCACTTGTTAAAGATTTGCAGGGCAAGCCTGGTGGCCTCAGATGCTTTGGTGCTGCTAGGCAGGTGCCTCAAAGGCTTTACACTTTGGATGAGCTGAAGCTGAATGGAATAGTAACTCAGTCTCTTCTGTCACCAGTGGATGCTACTCTTGGTTCCATAGAAAGAAATCTTCAGATTGCTGCTGTGGTTGGAGGTGTTTCTGCATGGAATGTTTTCGGGTTTAGTCCTCAGCAGCTTTTCTATGTTTCTTTAGCAGCATTGTTTCTGTGGACTCTGGACGCGATATCTTTCAATGGAGGAGTTAGTAGCTTGGCTATTGATACAATTGGTCACACCTTTAGTCAGAAGTACCACAATAGGGTCATTCAACATGAAGCTGGCCATTTCTTGATTGCGTACTTGCTTGGTATTCTTCCCAAGGGATATACACTAACTAGTTTGGATGCATTCAAGAAGGAAGGGTCCCTCAATGTTCAAGCAGGGACCGCGTTTGTGGATGTTGAGTTTGTTGAGGAGGTTAAAGCAGGCAAAGTATCAGCAAGTATTTGCGTGCGTAGCGCTCGCGGGTGTTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

245

Amino Acids

26.46

Weight (kDa)

8.66

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51680
fragaria_vesca FvH4_6g10300
malus_domestica MD04G1168400.v1.1 MD12G1181900.v1.1
prunus_persica Prupe.6G286600_v2.0.a1
pyrus_communis pycom04g14940 pycom12g17110
rosa_chinensis RchiOBHm_Chr3g0461051
rosa_laevigata RLG00000024955
rosa_multiflora Rmu_sc0012073.1_g000001 Rmu_sc0012074.1_g000001
rosa_roxburghii Rroxscaffold_6G00418890
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105400 Rh3BG109400 Rh3CG111000 Rh3DG111100
rosa_wichuraiana Rw3G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 223
AccII CGCG 3 cut(s) 440, 647, 723
AciI CCGC 2 cut(s) 645, 723
AcoI YGGCCR 1 cut(s) 538
AcuI CTGAAG 2 cut(s) 275, 314
AfaI GTAC 2 cut(s) 509, 557
AfeI AGCGCT 1 cut(s) 718
AfiI CCNNNNNNNGG 2 cut(s) 56, 517
AgsI TTSAA 5 cut(s) 112, 451, 527, 610, 635
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 6 cut(s) 155, 253, 259, 394, 468, 536
AluI AGCT 6 cut(s) 155, 253, 259, 394, 468, 536
Alw26I GTCTC 1 cut(s) 285
Aor51HI AGCGCT 1 cut(s) 718
AoxI GGCC 2 cut(s) 193, 538
ApeKI GCWGC 6 cut(s) 100, 152, 212, 338, 391, 413
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 719
AspS9I GGNCC 2 cut(s) 621, 642
AsuHPI GGTGA 1 cut(s) 282
AvaII GGWCC 2 cut(s) 621, 642
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 540
BanI GGYRCC 1 cut(s) 223
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 6 cut(s) 112, 164, 199, 325, 403, 425
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 285
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 2 cut(s) 216, 594
BfoI RGCGCY 1 cut(s) 720
BfuAI ACCTGC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 232
BisI GCNGC 6 cut(s) 101, 153, 213, 339, 392, 414
BlsI GCNGC 6 cut(s) 102, 154, 214, 340, 393, 415
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 2 cut(s) 621, 642
BmgT120I GGNCC 2 cut(s) 621, 642
BmiI GGNNCC 5 cut(s) 225, 313, 622, 623, 643
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 3 cut(s) 191, 289, 592
BplI GAGNNNNNCTC 2 cut(s) 139, 171
Bpu10I CCTNAGC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 576
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 517
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 4 cut(s) 253, 304, 607, 661
BseLI CCNNNNNNNGG 2 cut(s) 56, 517
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 4 cut(s) 72, 211, 290, 401
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 2 cut(s) 471, 686
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 6 cut(s) 112, 164, 199, 325, 403, 425
Bsh1236I CGCG 3 cut(s) 440, 647, 723
BshFI GGCC 2 cut(s) 195, 540
BshNI GGYRCC 1 cut(s) 223
BslFI GGGAC 2 cut(s) 607, 655
BslI CCNNNNNNNGG 2 cut(s) 56, 517
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 2 cut(s) 607, 655
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 2 cut(s) 195, 540
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 2 cut(s) 645, 723
BspANI GGCC 2 cut(s) 195, 540
BspCNI CTCAG 4 cut(s) 73, 210, 289, 400
BspFNI CGCG 3 cut(s) 440, 647, 723
BspLI GGNNCC 5 cut(s) 225, 313, 622, 623, 643
BspMI ACCTGC 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 5 cut(s) 185, 538, 685, 710, 721
BstDEI CTNAG 4 cut(s) 81, 197, 276, 387
BstF5I GGATG 4 cut(s) 253, 304, 607, 661
BstFNI CGCG 3 cut(s) 440, 647, 723
BstH2I RGCGCY 1 cut(s) 720
BstHHI GCGC 1 cut(s) 719
BstMAI GTCTC 1 cut(s) 285
BstMWI GCNNNNNNNGC 5 cut(s) 184, 201, 232, 644, 714
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 3 cut(s) 440, 647, 723
BstV1I GCAGC 6 cut(s) 112, 164, 199, 325, 403, 425
BsuRI GGCC 2 cut(s) 195, 540
BtsCI GGATG 4 cut(s) 253, 304, 607, 661
BtsIMutI CAGTG 1 cut(s) 300
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 5 cut(s) 185, 538, 685, 710, 721
CfoI GCGC 1 cut(s) 719
Cfr13I GGNCC 2 cut(s) 621, 642
CseI GACGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 508, 556
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 3 cut(s) 13, 363, 530
CviQI GTAC 2 cut(s) 508, 556
DdeI CTNAG 4 cut(s) 81, 197, 276, 387
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 576
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 2 cut(s) 621, 642
Eco47III AGCGCT 1 cut(s) 718
Eco57I CTGAAG 2 cut(s) 275, 314
EcoO109I RGGNCCY 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 2 cut(s) 18, 607
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 3 cut(s) 16, 366, 533
FaiI YATR 8 cut(s) 14, 28, 70, 317, 364, 402, 531, 585
FaqI GGGAC 2 cut(s) 607, 655
FatI CATG 3 cut(s) 12, 362, 529
FauI CCCGC 1 cut(s) 716
Fnu4HI GCNGC 6 cut(s) 101, 153, 213, 339, 392, 414
FokI GGATG 4 cut(s) 260, 311, 614, 668
Fsp4HI GCNGC 6 cut(s) 101, 153, 213, 339, 392, 414
FspBI CTAG 2 cut(s) 216, 594
GlaI GCGC 1 cut(s) 718
GluI GCNGC 6 cut(s) 101, 153, 213, 339, 392, 414
HaeII RGCGCY 1 cut(s) 720
HaeIII GGCC 2 cut(s) 195, 540
HgaI GACGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 719
Hin1II CATG 3 cut(s) 16, 366, 533
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HinfI GANTC 2 cut(s) 60, 430
HphI GGTGA 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 4 cut(s) 82, 200, 333, 504
Hpy188III TCNNGA 3 cut(s) 434, 547, 610
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 2 cut(s) 607, 611
HpyCH4V TGCA 4 cut(s) 16, 178, 362, 605
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 201, 232, 644, 714
HpyF3I CTNAG 4 cut(s) 81, 197, 276, 387
Hsp92II CATG 3 cut(s) 16, 366, 533
HspAI GCGC 1 cut(s) 717
KflI GGGWCCC 1 cut(s) 621
LpnPI CCDG 9 cut(s) 164, 174, 201, 206, 306, 419, 522, 624, 669
Lsp1109I GCAGC 6 cut(s) 112, 164, 199, 325, 403, 425
LweI GCATC 3 cut(s) 191, 289, 592
MaeI CTAG 2 cut(s) 216, 594
MaeIII GTNAC 3 cut(s) 271, 288, 488
MboII GAAGA 4 cut(s) 69, 275, 320, 563
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 1 cut(s) 483
MluNI TGGCCA 1 cut(s) 540
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 328
Mox20I TGGCCA 1 cut(s) 540
Mph1103I ATGCAT 2 cut(s) 18, 607
MroXI GAANNNNTTC 1 cut(s) 371
MscI TGGCCA 1 cut(s) 540
MseI TTAA 2 cut(s) 168, 678
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 189
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 3 cut(s) 440, 647, 723
MwoI GCNNNNNNNGC 5 cut(s) 184, 201, 232, 644, 714
NlaIII CATG 3 cut(s) 16, 366, 533
NlaIV GGNNCC 5 cut(s) 225, 313, 622, 623, 643
NmuCI GTSAC 2 cut(s) 288, 488
NsiI ATGCAT 2 cut(s) 18, 607
PaqCI CACCTGC 1 cut(s) 211
PctI GAATGC 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 6 cut(s) 102, 154, 214, 340, 393, 415
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PpuMI RGGWCCY 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 5 cut(s) 225, 313, 622, 623, 643
PspPI GGNCC 2 cut(s) 621, 642
PspPPI RGGWCCY 1 cut(s) 621
RsaI GTAC 2 cut(s) 509, 557
RsaNI GTAC 2 cut(s) 508, 556
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 2 cut(s) 168, 678
SatI GCNGC 6 cut(s) 101, 153, 213, 339, 392, 414
Sau96I GGNCC 2 cut(s) 621, 642
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 3 cut(s) 191, 289, 592
SinI GGWCC 2 cut(s) 621, 642
SmiMI CAYNNNNRTG 1 cut(s) 11
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 1 cut(s) 483
SsiI CCGC 2 cut(s) 645, 723
SspMI CTAG 2 cut(s) 216, 594
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 576
TasI AATT 1 cut(s) 483
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 2 cut(s) 168, 678
Tru9I TTAA 2 cut(s) 168, 678
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 2 cut(s) 288, 488
TseI GCWGC 6 cut(s) 100, 152, 212, 338, 391, 413
Tsp45I GTSAC 2 cut(s) 288, 488
TspDTI ATGAA 1 cut(s) 546
TspRI CASTG 1 cut(s) 300
VpaK11BI GGWCC 2 cut(s) 621, 642
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 2 cut(s) 216, 594
Zsp2I ATGCAT 2 cut(s) 18, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.