Prupe.6G286600_v2.0.a1

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013031
Physical Location & Seq
Forward (+)
26539846 .. 26541503
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G286600.1

Sequence Viewer

Length: 924 bp
ATGCCTGCCCAAGTTATGCCTGAAAAAGCCCTCCATGGAATTCATGGGTTGGGAAGGGACAACAATACTACTGCTCCTCCTCCTAAAAGGTTGGATGGAAAAGTTGCTATAGTGACAGGCGGTGCTAGAGGCATTGGAGAAGCAACAGTGAGGCTTTTTGCAAGGCATGGTGCCAAAGTAATCATTGCCGACGTGGAGGACGCAGTTGGCCTAACCCTAGCCAATTCCTTGAGCCCTTCAGTCACCTTTGTTCATTGTGATGTTAGCTTGGAAGAAGACATTGAGAACTTAGTTGAATCAACAATTTCCCGTTACGGGCAGCTCGACATTATGTTCAACAATGCCGGGATCCTCGGAAACCAGTCGAAACACAAGAGCATCATGGATTTTGACACCGACGAATTCGACCAGGTGATGCGGGTGAATGTGAGAGGAGCAGCATTGGGGATGAAGCATGCTGCAAGAGTGATGGTGCCTAGAGGAAATGGAGGGTGCATAATTTCAACATCAAGTGTAGCTGGGGTGGCAGGTGGGCTTGGGCCGCATGCCTACACAGCCTCAAAGCATGCCATTGTTGGGCTCACAAAGAACGCAGCCTGTGAATTGGGCCGGTATGGGATTAGGGTAAATTGCATTTCTCCATTTGGGGTTGCCACGTCAATGCTTGTGAACGCTTGGAGGACGAGCGGTGATGATGAGGAAGAAGAAGAATGCATGGATTTGGGGATGCCTTGTGAGCAAGAAGTAGAGAAAATGGAGGACTTTGTGAGGGGGCTTGCCAATTTGAAAGGGCAAACCCTAAGGGCTAAAGACATAGCTGAGGCTGCTCTTTATCTTGCTAGTGATGAATCCAAGTATGTTAGTGGCCATAACCTTGTTGTGGACGGTGGAATTACCACCTCAAGAAATTGTGTTGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

308

Amino Acids

32.55

Weight (kDa)

5.5

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51680
fragaria_vesca FvH4_6g10300
malus_domestica MD04G1168400.v1.1 MD12G1181900.v1.1
prunus_persica Prupe.6G286600_v2.0.a1
pyrus_communis pycom04g14940 pycom12g17110
rosa_chinensis RchiOBHm_Chr3g0461051
rosa_laevigata RLG00000024955
rosa_multiflora Rmu_sc0012073.1_g000001 Rmu_sc0012074.1_g000001
rosa_roxburghii Rroxscaffold_6G00418890
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105400 Rh3BG109400 Rh3CG111000 Rh3DG111100
rosa_wichuraiana Rw3G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 518
AccB1I GGYRCC 2 cut(s) 170, 472
AccBSI CCGCTC 1 cut(s) 687
AciI CCGC 4 cut(s) 120, 418, 542, 687
AclWI GGATC 2 cut(s) 343, 356
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 2 cut(s) 39, 401
AcuI CTGAAG 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 315, 576, 880
AgsI TTSAA 4 cut(s) 296, 337, 504, 787
AjiI CACGTC 2 cut(s) 193, 657
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 4 cut(s) 267, 322, 518, 818
AluI AGCT 4 cut(s) 267, 322, 518, 818
AlwI GGATC 2 cut(s) 343, 356
AoxI GGCC 4 cut(s) 208, 539, 607, 865
ApeKI GCWGC 5 cut(s) 319, 437, 458, 593, 824
ApoI RAATTY 2 cut(s) 39, 401
AspS9I GGNCC 2 cut(s) 539, 607
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 4 cut(s) 235, 424, 433, 701
AxyI CCTNAGG 1 cut(s) 800
BalI TGGCCA 1 cut(s) 867
BamHI GGATCC 1 cut(s) 348
BanI GGYRCC 2 cut(s) 170, 472
BanII GRGCYC 2 cut(s) 236, 582
BbsI GAAGAC 1 cut(s) 282
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 5 cut(s) 331, 445, 449, 605, 811
BccI CCATC 2 cut(s) 89, 463
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 1 cut(s) 346
BfaI CTAG 4 cut(s) 126, 218, 477, 840
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 518
BisI GCNGC 6 cut(s) 320, 438, 459, 542, 594, 825
BlsI GCNGC 6 cut(s) 321, 439, 460, 543, 595, 826
Bme1390I CCNGG 2 cut(s) 346, 410
BmgBI CACGTC 2 cut(s) 193, 657
BmgT120I GGNCC 2 cut(s) 539, 607
BmiI GGNNCC 3 cut(s) 172, 350, 474
BmrFI CCNGG 2 cut(s) 346, 410
BmsI GCATC 3 cut(s) 387, 405, 717
BpiI GAAGAC 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 819
BpuEI CTTGAG 2 cut(s) 250, 886
BpuMI CCSGG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 34, 352
BsaXI ACNNNNNCTCC 4 cut(s) 58, 61, 88, 91
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 576, 880
Bse118I RCCGGY 1 cut(s) 609
Bse1I ACTGG 1 cut(s) 361
Bse21I CCTNAGG 1 cut(s) 800
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 34, 352
BseGI GGATG 3 cut(s) 100, 453, 732
BseLI CCNNNNNNNGG 3 cut(s) 315, 576, 880
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 3 cut(s) 66, 69, 447
BseXI GCAGC 5 cut(s) 331, 445, 449, 605, 811
BseYI CCCAGC 1 cut(s) 518
BshFI GGCC 4 cut(s) 210, 541, 609, 867
BshNI GGYRCC 2 cut(s) 170, 472
BsiSI CCGG 2 cut(s) 345, 610
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 3 cut(s) 315, 576, 880
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 4 cut(s) 210, 541, 609, 867
Bsp1286I GDGCHC 2 cut(s) 236, 582
Bsp143I GATC 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 4 cut(s) 120, 418, 542, 687
BspANI GGCC 4 cut(s) 210, 541, 609, 867
BspCNI CTCAG 1 cut(s) 811
BspLI GGNNCC 3 cut(s) 172, 350, 474
BspMI ACCTGC 1 cut(s) 518
BspPI GGATC 2 cut(s) 343, 356
BspT107I GGYRCC 2 cut(s) 170, 472
BsrBI CCGCTC 1 cut(s) 687
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 609
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 609
BssECI CCNNGG 2 cut(s) 34, 352
BssMI GATC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 148, 887
BstC8I GCNNGC 5 cut(s) 6, 456, 546, 567, 777
BstDEI CTNAG 3 cut(s) 289, 800, 819
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 3 cut(s) 100, 453, 732
BstKTI GATC 1 cut(s) 351
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 5 cut(s) 524, 541, 554, 736, 824
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 3 cut(s) 458, 548, 569
BstSCI CCNGG 2 cut(s) 344, 408
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 5 cut(s) 331, 445, 449, 605, 811
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
Bsu36I CCTNAGG 1 cut(s) 800
BsuRI GGCC 4 cut(s) 210, 541, 609, 867
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 2 cut(s) 193, 657
BtsCI GGATG 3 cut(s) 100, 453, 732
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 5 cut(s) 6, 456, 546, 567, 777
Cfr10I RCCGGY 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 539, 607
CseI GACGC 1 cut(s) 209
CsiI ACCWGGT 1 cut(s) 408
CviAII CATG 8 cut(s) 35, 44, 167, 382, 455, 545, 566, 715
DdeI CTNAG 3 cut(s) 289, 800, 819
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
EaeI YGGCCR 1 cut(s) 865
Eco130I CCWWGG 1 cut(s) 34
Eco24I GRGCYC 2 cut(s) 236, 582
Eco57I CTGAAG 1 cut(s) 222
Eco81I CCTNAGG 1 cut(s) 800
EcoRI GAATTC 2 cut(s) 39, 401
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 716
EcoT38I GRGCYC 2 cut(s) 236, 582
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 8 cut(s) 38, 47, 170, 385, 458, 548, 569, 718
FaqI GGGAC 1 cut(s) 71
FatI CATG 8 cut(s) 34, 43, 166, 381, 454, 544, 565, 714
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 6 cut(s) 320, 438, 459, 542, 594, 825
FokI GGATG 3 cut(s) 107, 460, 739
FriOI GRGCYC 2 cut(s) 236, 582
Fsp4HI GCNGC 6 cut(s) 320, 438, 459, 542, 594, 825
FspBI CTAG 4 cut(s) 126, 218, 477, 840
GluI GCNGC 6 cut(s) 320, 438, 459, 542, 594, 825
GsaI CCCAGC 1 cut(s) 522
HaeIII GGCC 4 cut(s) 210, 541, 609, 867
HapII CCGG 2 cut(s) 345, 610
HgaI GACGC 1 cut(s) 209
Hin1II CATG 8 cut(s) 38, 47, 170, 385, 458, 548, 569, 718
HinfI GANTC 2 cut(s) 296, 848
HpaII CCGG 2 cut(s) 345, 610
HphI GGTGA 4 cut(s) 235, 424, 433, 701
Hpy166II GTNNAC 2 cut(s) 670, 883
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 1 cut(s) 903
Hpy8I GTNNAC 2 cut(s) 670, 883
Hpy99I CGWCG 2 cut(s) 194, 401
HpyAV CCTTC 2 cut(s) 48, 246
HpyCH4III ACNGT 2 cut(s) 148, 887
HpyCH4IV ACGT 2 cut(s) 192, 656
HpyCH4V TGCA 5 cut(s) 161, 461, 495, 633, 714
HpyF10VI GCNNNNNNNGC 5 cut(s) 524, 541, 554, 736, 824
HpyF3I CTNAG 3 cut(s) 289, 800, 819
HpySE526I ACGT 2 cut(s) 192, 656
Hsp92II CATG 8 cut(s) 38, 47, 170, 385, 458, 548, 569, 718
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 79, 434
Lsp1109I GCAGC 5 cut(s) 331, 445, 449, 605, 811
LweI GCATC 3 cut(s) 387, 405, 717
MabI ACCWGGT 1 cut(s) 408
MaeI CTAG 4 cut(s) 126, 218, 477, 840
MaeII ACGT 2 cut(s) 192, 656
MaeIII GTNAC 3 cut(s) 112, 241, 311
MalI GATC 1 cut(s) 350
MbiI CCGCTC 1 cut(s) 687
MboI GATC 1 cut(s) 348
MboII GAAGA 5 cut(s) 284, 287, 713, 716, 719
MflI RGATCY 1 cut(s) 348
MhlI GDGCHC 2 cut(s) 236, 582
MlsI TGGCCA 1 cut(s) 867
MluNI TGGCCA 1 cut(s) 867
MmeI TCCRAC 1 cut(s) 72
Mox20I TGGCCA 1 cut(s) 867
Mph1103I ATGCAT 1 cut(s) 716
MscI TGGCCA 1 cut(s) 867
MslI CAYNNNNRTG 2 cut(s) 258, 659
Msp20I TGGCCA 1 cut(s) 867
MspI CCGG 2 cut(s) 345, 610
MspR9I CCNGG 2 cut(s) 346, 410
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 5 cut(s) 524, 541, 554, 736, 824
NciI CCSGG 1 cut(s) 346
NcoI CCATGG 1 cut(s) 34
NdeII GATC 1 cut(s) 348
NlaIII CATG 8 cut(s) 38, 47, 170, 385, 458, 548, 569, 718
NlaIV GGNNCC 3 cut(s) 172, 350, 474
NmuCI GTSAC 2 cut(s) 112, 241
NsiI ATGCAT 1 cut(s) 716
NspI RCATGY 3 cut(s) 458, 548, 569
PaeI GCATGC 3 cut(s) 458, 548, 569
PaqCI CACCTGC 1 cut(s) 518
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 2 cut(s) 296, 848
PkrI GCNGC 6 cut(s) 321, 439, 460, 543, 595, 826
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 172, 350, 474
PspPI GGNCC 2 cut(s) 539, 607
PsuI RGATCY 1 cut(s) 348
RseI CAYNNNNRTG 2 cut(s) 258, 659
SatI GCNGC 6 cut(s) 320, 438, 459, 542, 594, 825
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 2 cut(s) 539, 607
ScrFI CCNGG 2 cut(s) 346, 410
SduI GDGCHC 2 cut(s) 236, 582
SexAI ACCWGGT 1 cut(s) 408
SfaNI GCATC 3 cut(s) 387, 405, 717
SfcI CTRYAG 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 258, 659
SmlI CTYRAG 2 cut(s) 229, 901
SmoI CTYRAG 2 cut(s) 229, 901
SphI GCATGC 3 cut(s) 458, 548, 569
SsiI CCGC 4 cut(s) 120, 418, 542, 687
SspMI CTAG 4 cut(s) 126, 218, 477, 840
StyD4I CCNGG 2 cut(s) 344, 408
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 2 cut(s) 148, 887
TaiI ACGT 2 cut(s) 195, 659
TaqI TCGA 3 cut(s) 324, 365, 405
TauI GCSGC 1 cut(s) 544
TfiI GAWTC 2 cut(s) 296, 848
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 112, 241
TseI GCWGC 5 cut(s) 319, 437, 458, 593, 824
Tsp45I GTSAC 2 cut(s) 112, 241
TspDTI ATGAA 4 cut(s) 32, 242, 464, 861
TspRI CASTG 1 cut(s) 153
XapI RAATTY 2 cut(s) 39, 401
XceI RCATGY 3 cut(s) 458, 548, 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XspI CTAG 4 cut(s) 126, 218, 477, 840
Zsp2I ATGCAT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.