AT3G51680

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013031
Physical Location & Seq
Reverse (-)
19173484 .. 19174739
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51680.1

Sequence Viewer

Length: 912 bp
ATGCCTGCCCAAGTGATCGCTGAGCAGACCACCTTTCACTCCGTCCACGACACCATTATGGAGGAGACGAATACAACTTTATATCCTAAGAGGTTGGAAGGAAAAGTAGCCATCATAACCGGAGGCGCACATGGAATAGGCAAAGCAACCGTCATGTTATTCGCTAGACACGGTGCCACAGTGGTGATTGCTGACGTGGACAACGTAGCTGGCTCTTCCCTGGCTAAGTCACTCTCATCCCACAAAACCTCCCCGATGGTGGCATTCATTAGCTGCGATGTCTCCGTAGAAGCCGACGTGGAAAACCTTGTGAACGTAACCGTTGCACGGTACGGTAGGCTTGACATTCTATTCAACAACGCGGGAGTTCTCGGAGATCAGAAGAAACACAAAAGCATATTAGACTTCGACGCGGACGAGTTTGACCACGTGATGCGTGTGAACGTACGTGGCGTAGGACTCGGCATGAAACACGGGGCACGCGCTATGATCAAGAGAGGATTCAAAGGCTGCATAATCTCCACGGCGAGTGTAGCCGGTGTGATGGGTGGAATGGGACCACACGCTTACACAGCCTCGAAACATGCGATCGTTGGTTTGACCAAGAACGCAGCGTGTGAGCTAGGCAAGTATGGGATTAGGGTTAATTGTATATCACCGTTTGGAGTTGCCACGTCGATGCTGGTTAACGCGTGGCGAAAGACGAGTGGTGGTGACGTGGAAGATGATGACGTGGAGGAGATGGAGGAGTTTGTGAGGAGTTTGGCTAATTTGAAAGGAGAGACATTGAGAGCGAATGATATAGCTGAAGCAGCGTTATATTTGGCGAGTGATGAGTCTAAGTATGTGAACGGACATAATCTTGTCGTTGACGGTGGTGTTACGACTGCAAGAAACTGTGTTGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

303

Amino Acids

32.15

Weight (kDa)

6.26

Isoelectric Point (pI)

22.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 35 - 232 4e-51 short chain dehydrogenase
KR PF08659 37 - 198 5.1e-11 KR domain
adh_short_C2 PF13561 43 - 295 4.8e-59 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51680
fragaria_vesca FvH4_6g10300
malus_domestica MD04G1168400.v1.1 MD12G1181900.v1.1
prunus_persica Prupe.6G286600_v2.0.a1
pyrus_communis pycom04g14940 pycom12g17110
rosa_chinensis RchiOBHm_Chr3g0461051
rosa_laevigata RLG00000024955
rosa_multiflora Rmu_sc0012073.1_g000001 Rmu_sc0012074.1_g000001
rosa_roxburghii Rroxscaffold_6G00418890
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105400 Rh3BG109400 Rh3CG111000 Rh3DG111100
rosa_wichuraiana Rw3G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 4 cut(s) 362, 413, 483, 692
AciI CCGC 2 cut(s) 362, 413
AcuI CTGAAG 1 cut(s) 828
AcvI CACGTG 1 cut(s) 430
AfaI GTAC 2 cut(s) 332, 447
AfiI CCNNNNNNNGG 2 cut(s) 259, 327
AflIII ACRYGT 1 cut(s) 690
AgsI TTSAA 3 cut(s) 355, 505, 775
AjiI CACGTC 5 cut(s) 196, 298, 675, 718, 733
AjnI CCWGG 1 cut(s) 219
AleI CACNNNNGTG 1 cut(s) 182
AluBI AGCT 4 cut(s) 209, 273, 622, 806
AluI AGCT 4 cut(s) 209, 273, 622, 806
Alw26I GTCTC 3 cut(s) 59, 286, 776
ApeKI GCWGC 4 cut(s) 273, 510, 611, 812
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspLEI GCGC 2 cut(s) 128, 485
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 3 cut(s) 196, 648, 725
AvaII GGWCC 1 cut(s) 557
BaeGI GKGCMC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 173
BbrPI CACGTG 1 cut(s) 430
BbvI GCAGC 4 cut(s) 260, 497, 623, 824
BccI CCATC 4 cut(s) 119, 250, 538, 736
BceAI ACGGC 1 cut(s) 540
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 3 cut(s) 59, 286, 776
BfaI CTAG 2 cut(s) 165, 623
BisI GCNGC 4 cut(s) 274, 511, 612, 813
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 4 cut(s) 275, 512, 613, 814
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 557
BmgBI CACGTC 5 cut(s) 196, 298, 675, 718, 733
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 2 cut(s) 175, 558
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 2 cut(s) 423, 669
Bpu1102I GCTNAGC 1 cut(s) 21
BsaAI YACGTR 2 cut(s) 430, 449
BsaJI CCNNGG 2 cut(s) 219, 522
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 327
Bse118I RCCGGY 1 cut(s) 536
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 219, 522
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 259, 327
BseMII CTCAG 1 cut(s) 12
BseRI GAGGAG 4 cut(s) 77, 752, 761, 772
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 4 cut(s) 260, 497, 623, 824
Bsh1236I CGCG 4 cut(s) 362, 413, 483, 692
Bsh1285I CGRYCG 1 cut(s) 591
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 591
BsiSI CCGG 2 cut(s) 120, 537
BsiWI CGTACG 1 cut(s) 445
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 2 cut(s) 259, 327
BsmAI GTCTC 3 cut(s) 59, 286, 776
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 4 cut(s) 15, 376, 489, 588
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 2 cut(s) 362, 413
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 4 cut(s) 362, 413, 483, 692
BspLI GGNNCC 2 cut(s) 175, 558
BspQI GCTCTTC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 2 cut(s) 219, 522
BssMI GATC 4 cut(s) 15, 376, 489, 588
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 9 cut(s) 151, 173, 181, 322, 330, 335, 660, 875, 899
Bst6I CTCTTC 1 cut(s) 220
BstBAI YACGTR 2 cut(s) 430, 449
BstC8I GCNNGC 3 cut(s) 6, 211, 481
BstDEI CTNAG 4 cut(s) 21, 87, 225, 840
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 4 cut(s) 362, 413, 483, 692
BstHHI GCGC 2 cut(s) 128, 485
BstKTI GATC 4 cut(s) 18, 379, 492, 591
BstMAI GTCTC 3 cut(s) 59, 286, 776
BstMBI GATC 4 cut(s) 15, 376, 489, 588
BstMCI CGRYCG 1 cut(s) 591
BstMWI GCNNNNNNNGC 3 cut(s) 533, 572, 812
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 481
BstUI CGCG 4 cut(s) 362, 413, 483, 692
BstV1I GCAGC 4 cut(s) 260, 497, 623, 824
BtgI CCRYGG 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 291
BtrI CACGTC 5 cut(s) 196, 298, 675, 718, 733
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 6, 211, 481
CfoI GCGC 2 cut(s) 128, 485
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 1 cut(s) 557
CseI GACGC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 331, 446
CviAII CATG 4 cut(s) 131, 154, 466, 584
CviQI GTAC 2 cut(s) 331, 446
DdeI CTNAG 4 cut(s) 21, 87, 225, 840
DpnI GATC 4 cut(s) 17, 378, 491, 590
DpnII GATC 4 cut(s) 15, 376, 489, 588
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 828
Eco72I CACGTG 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 4 cut(s) 134, 157, 469, 587
FaqI GGGAC 1 cut(s) 570
FatI CATG 4 cut(s) 130, 153, 465, 583
FauI CCCGC 1 cut(s) 355
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 4 cut(s) 274, 511, 612, 813
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 4 cut(s) 274, 511, 612, 813
FspBI CTAG 2 cut(s) 165, 623
GlaI GCGC 2 cut(s) 127, 484
GluI GCNGC 4 cut(s) 274, 511, 612, 813
HapII CCGG 2 cut(s) 120, 537
HgaI GACGC 1 cut(s) 419
HhaI GCGC 2 cut(s) 128, 485
Hin1II CATG 4 cut(s) 134, 157, 469, 587
Hin6I GCGC 2 cut(s) 126, 483
HinP1I GCGC 2 cut(s) 126, 483
HincII GTYRAC 2 cut(s) 688, 871
HindII GTYRAC 2 cut(s) 688, 871
HinfI GANTC 3 cut(s) 459, 501, 836
HpaI GTTAAC 1 cut(s) 688
HpaII CCGG 2 cut(s) 120, 537
HphI GGTGA 3 cut(s) 196, 648, 725
Hpy166II GTNNAC 7 cut(s) 46, 199, 313, 442, 688, 850, 871
Hpy188I TCNGA 2 cut(s) 374, 381
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 7 cut(s) 46, 199, 313, 442, 688, 850, 871
Hpy99I CGWCG 3 cut(s) 299, 413, 679
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 9 cut(s) 151, 173, 181, 322, 330, 335, 660, 875, 899
HpyCH4V TGCA 3 cut(s) 326, 513, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 572, 812
HpyF3I CTNAG 4 cut(s) 21, 87, 225, 840
Hsp92II CATG 4 cut(s) 134, 157, 469, 587
HspAI GCGC 2 cut(s) 126, 483
Ksp22I TGATCA 1 cut(s) 489
KspAI GTTAAC 1 cut(s) 688
Kzo9I GATC 4 cut(s) 15, 376, 489, 588
LguI GCTCTTC 1 cut(s) 220
LpnPI CCDG 7 cut(s) 18, 133, 195, 206, 233, 550, 668
Lsp1109I GCAGC 4 cut(s) 260, 497, 623, 824
LweI GCATC 2 cut(s) 423, 669
MaeI CTAG 2 cut(s) 165, 623
MaeIII GTNAC 4 cut(s) 228, 316, 713, 880
MalI GATC 4 cut(s) 17, 378, 491, 590
MboI GATC 4 cut(s) 15, 376, 489, 588
MboII GAAGA 3 cut(s) 207, 394, 734
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 2 cut(s) 646, 769
MluI ACGCGT 1 cut(s) 690
MlyI GAGTC 2 cut(s) 453, 845
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 9 cut(s) 55, 84, 116, 259, 491, 586, 730, 739, 750
MseI TTAA 2 cut(s) 645, 687
MslI CAYNNNNRTG 3 cut(s) 56, 182, 677
MspI CCGG 2 cut(s) 120, 537
MspR9I CCNGG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 4 cut(s) 362, 413, 483, 692
MwoI GCNNNNNNNGC 3 cut(s) 533, 572, 812
NdeII GATC 4 cut(s) 15, 376, 489, 588
NlaIII CATG 4 cut(s) 134, 157, 469, 587
NlaIV GGNNCC 2 cut(s) 175, 558
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 2 cut(s) 228, 713
NspI RCATGY 1 cut(s) 587
OliI CACNNNNGTG 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 4 cut(s) 201, 414, 450, 584
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 501
Pfl23II CGTACG 1 cut(s) 445
PkrI GCNGC 4 cut(s) 275, 512, 613, 814
Ple19I CGATCG 1 cut(s) 591
PleI GAGTC 2 cut(s) 453, 844
PmaCI CACGTG 1 cut(s) 430
PmlI CACGTG 1 cut(s) 430
PpsI GAGTC 2 cut(s) 453, 844
Ppu21I YACGTR 2 cut(s) 430, 449
Psp6I CCWGG 1 cut(s) 219
PspCI CACGTG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 219
PspLI CGTACG 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 175, 558
PspPI GGNCC 1 cut(s) 557
PvuI CGATCG 1 cut(s) 591
RsaI GTAC 2 cut(s) 332, 447
RsaNI GTAC 2 cut(s) 331, 446
RseI CAYNNNNRTG 3 cut(s) 56, 182, 677
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 2 cut(s) 645, 687
SatI GCNGC 4 cut(s) 274, 511, 612, 813
Sau3AI GATC 4 cut(s) 15, 376, 489, 588
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 2 cut(s) 453, 845
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 2 cut(s) 423, 669
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 3 cut(s) 56, 182, 677
Sse9I AATT 2 cut(s) 646, 769
SsiI CCGC 2 cut(s) 362, 413
SspMI CTAG 2 cut(s) 165, 623
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 9 cut(s) 151, 173, 181, 322, 330, 335, 660, 875, 899
TaqI TCGA 3 cut(s) 408, 578, 677
TasI AATT 2 cut(s) 646, 769
TfiI GAWTC 1 cut(s) 501
Tru1I TTAA 2 cut(s) 645, 687
Tru9I TTAA 2 cut(s) 645, 687
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 2 cut(s) 228, 713
TseI GCWGC 4 cut(s) 273, 510, 611, 812
Tsp45I GTSAC 2 cut(s) 228, 713
TspDTI ATGAA 2 cut(s) 256, 482
TspGWI ACGGA 3 cut(s) 31, 274, 867
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 557
XceI RCATGY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XspI CTAG 2 cut(s) 165, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.