Prupe.6G286900_v2.0.a1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015133
Physical Location & Seq
Forward (+)
26553169 .. 26553908
740 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G286900.1

Sequence Viewer

Length: 420 bp
ATGCAGAACAATGCAATAGTGGAAGCCCTGTACAAGGCACTGGCCCAAGGCCACACAGAAGCAGTAGCAAAGCTTCTAGCAAGTGACCTCGAATGGTGGTTCCATGGCCCTCCACAGAGCCAGCACATGATGCGTGTGCTTACAGGGGAGGCAAGCCACACAGACTTCAGGTTCGAGCCAAGAAGCATCACAGAGGTTGGTGACTGTGTGATTGTTGAGGGATGGGAAGGCGCAAAGGCCTATTGGGTGCATGTGTGGACCCTCAAAGAAGGCCTCATCACCCATTTCAGGGAGTATTTCAACACGTGGCTCACTGTCAGGGATCTGAAGCCGCAGGGCTGGGAGAACTTCACTGTGTGGCAGAGCATGCCAAGAGACCTGTTCCACCGCTCCTTGCCTAGCATTCTGCTTGCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

140

Amino Acids

16.17

Weight (kDa)

5.94

Isoelectric Point (pI)

23.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01740
fragaria_vesca FvH4_6g10320
malus_domestica MD04G1168600.v1.1 MD12G1182200.v1.1
prunus_persica Prupe.6G286900_v2.0.a1
pyrus_communis pycom12g17130
rosa_chinensis RchiOBHm_Chr3g0461091
rosa_laevigata RLG00000024953
rosa_multiflora Rmu_co8398679.1_g000001 Rmu_sc0001521.1_g000057
rosa_roxburghii Rroxscaffold_6G00418860
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3BG109800 Rh3CG111300 Rh3DG111500
rosa_wichuraiana Rw3G009040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 390
AciI CCGC 2 cut(s) 332, 388
AclWI GGATC 1 cut(s) 330
AcuI CTGAAG 2 cut(s) 151, 347
AcvI CACGTG 1 cut(s) 306
AdeI CACNNNGTG 1 cut(s) 357
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 3 cut(s) 34, 288, 289
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 1 cut(s) 330
AoxI GGCC 5 cut(s) 42, 49, 106, 237, 271
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 3 cut(s) 43, 107, 258
AsuHPI GGTGA 2 cut(s) 212, 271
AvaII GGWCC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbrPI CACGTG 1 cut(s) 306
BccI CCATC 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 2 cut(s) 77, 399
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 3 cut(s) 43, 107, 258
BmiI GGNNCC 2 cut(s) 101, 260
BmsI GCATC 2 cut(s) 120, 195
BsaAI YACGTR 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 46, 103
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 288, 289
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 46, 103
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 3 cut(s) 34, 288, 289
BseNI ACTGG 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 339
BshFI GGCC 5 cut(s) 44, 51, 108, 239, 273
BslI CCNNNNNNNGG 3 cut(s) 34, 288, 289
BsmAI GTCTC 1 cut(s) 369
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 5 cut(s) 44, 51, 108, 239, 273
Bso31I GGTCTC 1 cut(s) 369
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 1 cut(s) 322
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 2 cut(s) 332, 388
BspANI GGCC 5 cut(s) 44, 51, 108, 239, 273
BspLI GGNNCC 2 cut(s) 101, 260
BspPI GGATC 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 390
BsrGI TGTACA 1 cut(s) 30
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 46, 103
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 2 cut(s) 46, 103
Bst4CI ACNGT 3 cut(s) 206, 316, 355
BstAPI GCANNNNNTGC 2 cut(s) 130, 367
BstAUI TGTACA 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 4 cut(s) 122, 154, 368, 411
BstDSI CCRYGG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 2 cut(s) 130, 367
BstNSI RCATGY 2 cut(s) 254, 370
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 5 cut(s) 44, 51, 108, 239, 273
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 3 cut(s) 38, 312, 351
Cac8I GCNNGC 4 cut(s) 122, 154, 368, 411
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 43, 107, 258
Csp6I GTAC 1 cut(s) 31
CviAII CATG 4 cut(s) 104, 127, 251, 367
CviQI GTAC 1 cut(s) 31
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
DraIII CACNNNGTG 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 46, 103
Eco147I AGGCCT 2 cut(s) 239, 273
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 151, 347
Eco72I CACGTG 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoT14I CCWWGG 2 cut(s) 46, 103
ErhI CCWWGG 2 cut(s) 46, 103
FaeI CATG 4 cut(s) 107, 130, 254, 370
FaiI YATR 4 cut(s) 105, 128, 252, 368
FatI CATG 4 cut(s) 103, 126, 250, 366
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 2 cut(s) 77, 399
GlaI GCGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 332
GsaI CCCAGC 1 cut(s) 343
HaeIII GGCC 5 cut(s) 44, 51, 108, 239, 273
HhaI GCGC 1 cut(s) 233
Hin1II CATG 4 cut(s) 107, 130, 254, 370
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 71
HphI GGTGA 2 cut(s) 212, 271
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 1 cut(s) 327
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 221, 263
HpyCH4III ACNGT 3 cut(s) 206, 316, 355
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 4, 14, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 367
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 4 cut(s) 107, 130, 254, 370
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 395
LweI GCATC 2 cut(s) 120, 195
MaeI CTAG 2 cut(s) 77, 399
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 83, 200
MalI GATC 1 cut(s) 324
MbiI CCGCTC 1 cut(s) 390
MboI GATC 1 cut(s) 322
MflI RGATCY 1 cut(s) 322
MnlI CCTC 7 cut(s) 98, 120, 142, 187, 211, 272, 284
Mva1269I GAATGC 1 cut(s) 402
MwoI GCNNNNNNNGC 2 cut(s) 130, 367
NcoI CCATGG 1 cut(s) 103
NdeII GATC 1 cut(s) 322
NlaIII CATG 4 cut(s) 107, 130, 254, 370
NlaIV GGNNCC 2 cut(s) 101, 260
NmuCI GTSAC 2 cut(s) 83, 200
NspI RCATGY 2 cut(s) 254, 370
PaeI GCATGC 1 cut(s) 370
PceI AGGCCT 2 cut(s) 239, 273
PctI GAATGC 1 cut(s) 402
PkrI GCNGC 1 cut(s) 333
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
Ppu21I YACGTR 1 cut(s) 306
PspCI CACGTG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 101, 260
PspPI GGNCC 3 cut(s) 43, 107, 258
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 3 cut(s) 43, 107, 258
SetI ASST 6 cut(s) 75, 90, 173, 198, 308, 381
SfaNI GCATC 2 cut(s) 120, 195
SinI GGWCC 1 cut(s) 258
SphI GCATGC 1 cut(s) 370
SseBI AGGCCT 2 cut(s) 239, 273
SsiI CCGC 2 cut(s) 332, 388
SspMI CTAG 2 cut(s) 77, 399
StuI AGGCCT 2 cut(s) 239, 273
StyI CCWWGG 2 cut(s) 46, 103
TaaI ACNGT 3 cut(s) 206, 316, 355
TaiI ACGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 90, 174
TatI WGTACW 1 cut(s) 30
TauI GCSGC 1 cut(s) 334
TscAI CASTG 3 cut(s) 45, 319, 358
TseFI GTSAC 2 cut(s) 83, 200
Tsp45I GTSAC 2 cut(s) 83, 200
TspRI CASTG 3 cut(s) 45, 319, 358
VpaK11BI GGWCC 1 cut(s) 258
XagI CCTNNNNNAGG 1 cut(s) 32
XceI RCATGY 2 cut(s) 254, 370
XspI CTAG 2 cut(s) 77, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.