Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010193

Physical Location & Seq

Genomic Coordinates Forward (+)

27501582 .. 27503303

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1183800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTTGGTTGAAAAGGAGATATCAAGCGTTGTTGGCGGCAGTGGCGGTGGTTGTGTGGTGGGCGATGATGGCGACGATGATGACGAAGAATGCGGCGGCAGTGGTAGTGGTAGTGGTAGTGGTGGGTCCCACGGAAGATGCAGATGCAGTGAGGAGAAGGCAAAGAAGCAGAGAGGATTTAGTGCTGGTGGGTTGTCGAGAAATTTCGGAAGGGCCAAGCAGGTGGTCCTTCATCCGTTTGGAAGATCCAAAAGGCAGCTTCCCAGAAAAGCTAGGGGTTCTGCTTCTGGAGCTTCTTCTTTGGCGTCGTCTTGTGCTTTTTCTTCAGGTAAGATGTTTGGAGGAGGTGGCGGTAACGGCGGTGGTAATAAAAGTTGTTACTTTTGTTTCACGCAACCCCCAACTTTGGACTCTCCAATGGGGTCTCAAACCAGCGACCCTGAGCACCCAAATTTCACCTTTGGGATGTTGAGAGCTTTTGTGGAGAGCAATGAATTTTATTCCAAAGATTGCAATCCCCACTTAGATATTGTTGTTTCCCGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

18.93

Weight (kDa)

8.12

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05935 AT3G05935 AT3G05935 AT3G05935 AT3G05935 AT5G26720
fragaria_vesca	FvH4_6g08770
malus_domestica	MD04G1183800.v1.1 MD12G1197100.v1.1
prunus_persica	Prupe.6G302400_v2.0.a1
pyrus_communis	pycom04g16260
rosa_chinensis	RchiOBHm_Chr3g0459031
rosa_multiflora	Rmu_sc0004343.1_g000019 Rmu_sc0039771.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420580
rosa_rugosa	Rorug03G0032900
rosa_samantha	Rh3AG090800 Rh3BG093800 Rh3CG094100 Rh3DG094400
rosa_wichuraiana	Rw3G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AciI	CCGC	6 cut(s)	39, 48, 96, 99, 354, 363
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	3 cut(s)	205, 454, 497
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	4 cut(s)	262, 275, 296, 479
AluI	AGCT	4 cut(s)	262, 275, 296, 479
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	3 cut(s)	205, 454, 497
AspS9I	GGNCC	3 cut(s)	129, 216, 229
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	2 cut(s)	129, 229
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	4 cut(s)	40, 97, 100, 260
BlsI	GCNGC	4 cut(s)	41, 98, 101, 261
Bme18I	GGWCC	2 cut(s)	129, 229
BmgT120I	GGNCC	3 cut(s)	129, 216, 229
BmiI	GGNNCC	2 cut(s)	130, 131
BmsI	GCATC	2 cut(s)	131, 137
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	499
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	235, 474
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	435
BseRI	GAGGAG	2 cut(s)	170, 360
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	6 cut(s)	39, 48, 96, 99, 354, 363
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	130, 131
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	248
BssNI	GRCGYC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	444, 526
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	235, 474
BstKTI	GATC	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 45, 72, 293, 360
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	235, 474
BtsI	GCAGTG	3 cut(s)	49, 109, 157
BtsIMutI	CAGTG	3 cut(s)	49, 109, 157
BveI	ACCTGC	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	129, 216, 229
CseI	GACGC	1 cut(s)	297
CviJI	RGCY	5 cut(s)	218, 262, 275, 296, 479
CviKI_1	RGCY	5 cut(s)	218, 262, 275, 296, 479
DdeI	CTNAG	2 cut(s)	444, 526
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
Eco31I	GGTCTC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	129, 229
Eco57I	CTGAAG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	24
FaqI	GGGAC	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	40, 97, 100, 260
FokI	GGATG	2 cut(s)	222, 481
Fsp4HI	GCNGC	4 cut(s)	40, 97, 100, 260
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	4 cut(s)	40, 97, 100, 260
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	218
HgaI	GACGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	308
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	1 cut(s)	451
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	3 cut(s)	201, 291, 543
Hpy99I	CGWCG	2 cut(s)	80, 313
HpyAV	CCTTC	3 cut(s)	154, 207, 242
HpyCH4V	TGCA	3 cut(s)	144, 150, 516
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 45, 72, 293, 360
HpyF3I	CTNAG	2 cut(s)	444, 526
Hsp92I	GRCGYC	1 cut(s)	308
KflI	GGGWCCC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	7 cut(s)	174, 209, 276, 280, 315, 448, 456
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	2 cut(s)	131, 137
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	356, 380
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	5 cut(s)	101, 150, 258, 291, 318
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	3 cut(s)	205, 454, 497
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	4 cut(s)	148, 170, 338, 341
MseI	TTAA	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	36, 45, 72, 293, 360
NdeII	GATC	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	130, 131
PaqCI	CACCTGC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	41, 98, 101, 261
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	130, 131
PspPI	GGNCC	3 cut(s)	129, 216, 229
PspPPI	RGGWCCY	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	550
SatI	GCNGC	4 cut(s)	40, 97, 100, 260
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	3 cut(s)	129, 216, 229
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	8 cut(s)	228, 264, 277, 298, 334, 352, 464, 481
SfaNI	GCATC	2 cut(s)	131, 137
SinI	GGWCC	2 cut(s)	129, 229
Sse9I	AATT	3 cut(s)	205, 454, 497
SsiI	CCGC	6 cut(s)	39, 48, 96, 99, 354, 363
SspMI	CTAG	1 cut(s)	276
TaqI	TCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	205, 454, 497
TauI	GCSGC	3 cut(s)	42, 99, 102
Tru1I	TTAA	1 cut(s)	550
Tru9I	TTAA	1 cut(s)	550
TscAI	CASTG	3 cut(s)	49, 109, 157
TseI	GCWGC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	224, 510
TspGWI	ACGGA	2 cut(s)	150, 228
TspRI	CASTG	3 cut(s)	49, 109, 157
VpaK11BI	GGWCC	2 cut(s)	129, 229
XapI	RAATTY	3 cut(s)	205, 454, 497
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.