Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010193

Physical Location & Seq

Genomic Coordinates Forward (+)

27841913 .. 27843881

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1197100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCTTTGGTTGAAAAGGAGATATCAAGCGTTGTTGGCGGCAGTGGTGGTGGTGGCTGTGTGGTGGGCGATGATGGCGACGACGATGACGAGGAATGCGGCGGCAGTGGTAGTGGTAGTGGTGGGTCGCACGGAAGATGCAGATGCAGTGAGGAGAAGGCAAAGAAGCAGAGAGGGTTTAGTGGTGGTGGGTTGTCGAGAAATTTCCGAAAGGCGAAGCAGGTGGTCCTGCATCCGTTTGGAAGATCCAAAAAGCAGCTTCCCAGAAAAGCCAAGCCAAGGGCTTCCGCTTCTGGTTCTGCTTCTGGATCTTCCTATTTTGCGCCGTCTCGTGCTTTTTCTTCAGGTAAGAGGTTTGGAGGAGGTGGCGGTGATGGTGGTGGTAATAAAGGTTGTTACTTTTGTTTCACGCAATCCCCAACTCTGGATTCCCCAAGGGGGTCTCAGACCAGTGACCCTGAGCACCCAAATTTTACTTTTGGGATGTTGAGAGCTTTTGTTGAGAGCAATGGATTTTATTCCAAAGATTGCAATCCCCACTTAGATATTGATGTTTCCTCATATAAAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

19.86

Weight (kDa)

8.84

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05935 AT3G05935 AT3G05935 AT3G05935 AT3G05935 AT5G26720
fragaria_vesca	FvH4_6g08770
malus_domestica	MD04G1183800.v1.1 MD12G1197100.v1.1
prunus_persica	Prupe.6G302400_v2.0.a1
pyrus_communis	pycom04g16260
rosa_chinensis	RchiOBHm_Chr3g0459031
rosa_multiflora	Rmu_sc0004343.1_g000019 Rmu_sc0039771.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420580
rosa_rugosa	Rorug03G0032900
rosa_samantha	Rh3AG090800 Rh3BG093800 Rh3CG094100 Rh3DG094400
rosa_wichuraiana	Rw3G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AciI	CCGC	5 cut(s)	39, 99, 102, 288, 369
AclWI	GGATC	2 cut(s)	240, 316
AcsI	RAATTY	2 cut(s)	202, 469
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	279, 424, 438
AgsI	TTSAA	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AluBI	AGCT	2 cut(s)	259, 494
AluI	AGCT	2 cut(s)	259, 494
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	333, 447
AlwI	GGATC	2 cut(s)	240, 316
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	202, 469
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	68, 368
BceAI	ACGGC	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	333, 447
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	4 cut(s)	40, 100, 103, 257
BlsI	GCNGC	4 cut(s)	41, 101, 104, 258
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmsI	GCATC	3 cut(s)	128, 134, 241
Bpu10I	CCTNAGC	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	531
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	278, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 424, 438
Bse1I	ACTGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	278, 434
BseGI	GGATG	2 cut(s)	232, 489
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	3 cut(s)	279, 424, 438
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	450, 458
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	167, 375
BseXI	GCAGC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	465
BslI	CCNNNNNNNGG	3 cut(s)	279, 424, 438
BsmAI	GTCTC	2 cut(s)	333, 447
BsmBI	CGTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	245, 308
BspACI	CCGC	5 cut(s)	39, 99, 102, 288, 369
BspCNI	CTCAG	2 cut(s)	451, 457
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	240, 316
BspTNI	GGTCTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	278, 434
BssMI	GATC	2 cut(s)	245, 308
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	278, 434
Bst2BI	CACGAG	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	444, 459, 541
BstF5I	GGATG	2 cut(s)	232, 489
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	248, 311
BstMAI	GTCTC	2 cut(s)	333, 447
BstMBI	GATC	2 cut(s)	245, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 75
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	245, 308
BstYI	RGATCY	2 cut(s)	245, 308
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	232, 489
BtsI	GCAGTG	3 cut(s)	49, 112, 154
BtsIMutI	CAGTG	4 cut(s)	49, 112, 154, 457
BveI	ACCTGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	226
CviJI	RGCY	6 cut(s)	57, 259, 272, 277, 284, 494
CviKI_1	RGCY	6 cut(s)	57, 259, 272, 277, 284, 494
DdeI	CTNAG	3 cut(s)	444, 459, 541
DpnI	GATC	2 cut(s)	247, 310
DpnII	GATC	2 cut(s)	245, 308
Eco130I	CCWWGG	2 cut(s)	278, 434
Eco31I	GGTCTC	1 cut(s)	447
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	278, 434
ErhI	CCWWGG	2 cut(s)	278, 434
Esp3I	CGTCTC	1 cut(s)	333
FaiI	YATR	2 cut(s)	562, 564
Fnu4HI	GCNGC	4 cut(s)	40, 100, 103, 257
FokI	GGATG	2 cut(s)	219, 496
Fsp4HI	GCNGC	4 cut(s)	40, 100, 103, 257
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	4 cut(s)	40, 100, 103, 257
HhaI	GCGC	1 cut(s)	325
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	428
HphI	GGTGA	1 cut(s)	383
Hpy188I	TCNGA	2 cut(s)	209, 447
Hpy188III	TCNNGA	3 cut(s)	198, 306, 425
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	141, 147, 232, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 75
HpyF3I	CTNAG	3 cut(s)	444, 459, 541
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	245, 308
LpnPI	CCDG	9 cut(s)	206, 242, 277, 279, 291, 330, 410, 463, 471
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	3 cut(s)	128, 134, 241
MaeIII	GTNAC	2 cut(s)	395, 452
MalI	GATC	2 cut(s)	247, 310
MboI	GATC	2 cut(s)	245, 308
MboII	GAAGA	4 cut(s)	147, 255, 303, 333
MflI	RGATCY	2 cut(s)	245, 308
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	2 cut(s)	202, 469
MnlI	CCTC	7 cut(s)	85, 145, 167, 345, 353, 356, 568
Mva1269I	GAATGC	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	36, 75
NdeII	GATC	2 cut(s)	245, 308
NmuCI	GTSAC	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	4 cut(s)	41, 101, 104, 258
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	245, 308
SatI	GCNGC	4 cut(s)	40, 100, 103, 257
Sau3AI	GATC	2 cut(s)	245, 308
Sau96I	GGNCC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	7 cut(s)	225, 261, 349, 356, 367, 394, 496
SfaNI	GCATC	3 cut(s)	128, 134, 241
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	2 cut(s)	202, 469
SsiI	CCGC	5 cut(s)	39, 99, 102, 288, 369
StyI	CCWWGG	2 cut(s)	278, 434
TaqI	TCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	202, 469
TauI	GCSGC	3 cut(s)	42, 102, 105
TfiI	GAWTC	1 cut(s)	428
TscAI	CASTG	4 cut(s)	49, 112, 154, 457
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	452
TspGWI	ACGGA	2 cut(s)	147, 225
TspRI	CASTG	4 cut(s)	49, 112, 154, 457
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	2 cut(s)	202, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.