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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05935 AT3G05935 AT3G05935 AT3G05935 AT3G05935 AT5G26720 |
| fragaria_vesca | FvH4_6g08770 |
| malus_domestica | MD04G1183800.v1.1 MD12G1197100.v1.1 |
| prunus_persica | Prupe.6G302400_v2.0.a1 |
| pyrus_communis | pycom04g16260 |
| rosa_chinensis | RchiOBHm_Chr3g0459031 |
| rosa_multiflora | Rmu_sc0004343.1_g000019 Rmu_sc0039771.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00420580 |
| rosa_rugosa | Rorug03G0032900 |
| rosa_samantha | Rh3AG090800 Rh3BG093800 Rh3CG094100 Rh3DG094400 |
| rosa_wichuraiana | Rw3G007790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1299 |
| AccB1I | GGYRCC | 2 cut(s) | 2567, 2973 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2583 |
| AccI | GTMKAC | 1 cut(s) | 3323 |
| AciI | CCGC | 3 cut(s) | 218, 770, 2657 |
| AclWI | GGATC | 2 cut(s) | 389, 914 |
| AcoI | YGGCCR | 2 cut(s) | 666, 3010 |
| AcsI | RAATTY | 8 cut(s) | 681, 836, 1652, 1918, 2280, 3181, 3234, 3247 |
| AcuI | CTGAAG | 4 cut(s) | 1025, 1892, 2787, 3537 |
| AfaI | GTAC | 4 cut(s) | 562, 1401, 2500, 2797 |
| AflII | CTTAAG | 1 cut(s) | 3037 |
| AflIII | ACRYGT | 3 cut(s) | 2840, 3329, 3706 |
| AjnI | CCWGG | 6 cut(s) | 1114, 1222, 1386, 1402, 3521, 3769 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 69, 101, 1641, 1673, 2905, 2937 |
| Alw21I | GWGCWC | 2 cut(s) | 238, 2838 |
| AlwI | GGATC | 2 cut(s) | 389, 914 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 675, 3676 |
| Ama87I | CYCGRG | 1 cut(s) | 1785 |
| AoxI | GGCC | 7 cut(s) | 137, 666, 886, 997, 1268, 2312, 3010 |
| ApoI | RAATTY | 8 cut(s) | 681, 836, 1652, 1918, 2280, 3181, 3234, 3247 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1996, 2028, 3305, 3337 |
| AseI | ATTAAT | 2 cut(s) | 483, 3660 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1446, 3185 |
| AspLEI | GCGC | 1 cut(s) | 3225 |
| AspS9I | GGNCC | 7 cut(s) | 988, 997, 1268, 1684, 1793, 2848, 3280 |
| AsuHPI | GGTGA | 7 cut(s) | 833, 1223, 1597, 1973, 2414, 3616, 3629 |
| AsuII | TTCGAA | 1 cut(s) | 2911 |
| AsuNHI | GCTAGC | 3 cut(s) | 104, 1966, 2371 |
| AvaI | CYCGRG | 1 cut(s) | 1785 |
| AvaII | GGWCC | 5 cut(s) | 988, 1684, 1793, 2848, 3280 |
| AxyI | CCTNAGG | 1 cut(s) | 992 |
| BalI | TGGCCA | 2 cut(s) | 668, 3012 |
| BanI | GGYRCC | 2 cut(s) | 2567, 2973 |
| BanII | GRGCYC | 1 cut(s) | 2838 |
| BbsI | GAAGAC | 1 cut(s) | 988 |
| Bbv12I | GWGCWC | 2 cut(s) | 238, 2838 |
| BciT130I | CCWGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| BciVI | GTATCC | 1 cut(s) | 1813 |
| BclI | TGATCA | 3 cut(s) | 754, 1590, 2590 |
| BfmI | CTRYAG | 7 cut(s) | 576, 812, 939, 1065, 3004, 3372, 3837 |
| BfoI | RGCGCY | 1 cut(s) | 3226 |
| BfrI | CTTAAG | 1 cut(s) | 3037 |
| BfuI | GTATCC | 1 cut(s) | 1813 |
| BglII | AGATCT | 1 cut(s) | 3115 |
| BlpI | GCTNAGC | 1 cut(s) | 2376 |
| BmcAI | AGTACT | 1 cut(s) | 2500 |
| Bme1390I | CCNGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| Bme18I | GGWCC | 5 cut(s) | 988, 1684, 1793, 2848, 3280 |
| BmeT110I | CYCGRG | 1 cut(s) | 1785 |
| BmgT120I | GGNCC | 7 cut(s) | 988, 997, 1268, 1684, 1793, 2848, 3280 |
| BmiI | GGNNCC | 6 cut(s) | 998, 1685, 1686, 2569, 2975, 3649 |
| BmrFI | CCNGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| BmrI | ACTGGG | 2 cut(s) | 742, 2305 |
| BmsI | GCATC | 4 cut(s) | 24, 385, 757, 1995 |
| BmtI | GCTAGC | 3 cut(s) | 108, 1970, 2375 |
| BmuI | ACTGGG | 2 cut(s) | 742, 2305 |
| BpiI | GAAGAC | 1 cut(s) | 988 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 34, 3575, 3607 |
| BpmI | CTGGAG | 2 cut(s) | 106, 3131 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2376 |
| Bpu14I | TTCGAA | 1 cut(s) | 2911 |
| BpuEI | CTTGAG | 6 cut(s) | 1153, 1248, 1577, 2032, 3599, 3681 |
| Bsa29I | ATCGAT | 1 cut(s) | 3630 |
| BsaAI | YACGTR | 1 cut(s) | 321 |
| BsaI | GGTCTC | 3 cut(s) | 2549, 2604, 3446 |
| BsaWI | WCCGGW | 1 cut(s) | 985 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 156, 186, 2545, 2575, 3765, 3795 |
| Bse1I | ACTGG | 8 cut(s) | 620, 669, 748, 1213, 1614, 2092, 2300, 2600 |
| Bse21I | CCTNAGG | 1 cut(s) | 992 |
| Bse3DI | GCAATG | 3 cut(s) | 541, 1769, 2455 |
| BseBI | CCWGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| BseCI | ATCGAT | 1 cut(s) | 3630 |
| BseGI | GGATG | 9 cut(s) | 39, 631, 772, 823, 1053, 1129, 1781, 2305, 3406 |
| BseMI | GCAATG | 3 cut(s) | 541, 1769, 2455 |
| BseMII | CTCAG | 9 cut(s) | 463, 891, 983, 1431, 2256, 2517, 2615, 2629, 2829 |
| BseNI | ACTGG | 8 cut(s) | 620, 669, 748, 1213, 1614, 2092, 2300, 2600 |
| BseRI | GAGGAG | 2 cut(s) | 883, 3445 |
| BseYI | CCCAGC | 1 cut(s) | 333 |
| BsgI | GTGCAG | 3 cut(s) | 295, 349, 2440 |
| BshFI | GGCC | 7 cut(s) | 139, 668, 888, 999, 1270, 2314, 3012 |
| BshNI | GGYRCC | 2 cut(s) | 2567, 2973 |
| BshVI | ATCGAT | 1 cut(s) | 3630 |
| BsiHKAI | GWGCWC | 2 cut(s) | 238, 2838 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1785 |
| BsiSI | CCGG | 1 cut(s) | 986 |
| BslFI | GGGAC | 3 cut(s) | 1187, 1485, 1697 |
| BsmFI | GGGAC | 3 cut(s) | 1187, 1485, 1697 |
| BsmI | GAATGC | 2 cut(s) | 2037, 2748 |
| BsnI | GGCC | 7 cut(s) | 139, 668, 888, 999, 1270, 2314, 3012 |
| Bso31I | GGTCTC | 3 cut(s) | 2549, 2604, 3446 |
| BsoBI | CYCGRG | 1 cut(s) | 1785 |
| Bsp119I | TTCGAA | 1 cut(s) | 2911 |
| Bsp1286I | GDGCHC | 2 cut(s) | 238, 2838 |
| Bsp143I | GATC | 7 cut(s) | 381, 754, 919, 1590, 1825, 2590, 3115 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2376 |
| Bsp19I | CCATGG | 2 cut(s) | 176, 855 |
| BspACI | CCGC | 3 cut(s) | 218, 770, 2657 |
| BspANI | GGCC | 7 cut(s) | 139, 668, 888, 999, 1270, 2314, 3012 |
| BspCNI | CTCAG | 9 cut(s) | 462, 892, 984, 1430, 2257, 2518, 2614, 2628, 2828 |
| BspDI | ATCGAT | 1 cut(s) | 3630 |
| BspHI | TCATGA | 1 cut(s) | 1593 |
| BspLI | GGNNCC | 6 cut(s) | 998, 1685, 1686, 2569, 2975, 3649 |
| BspMAI | CTGCAG | 1 cut(s) | 816 |
| BspOI | GCTAGC | 3 cut(s) | 108, 1970, 2375 |
| BspPI | GGATC | 2 cut(s) | 389, 914 |
| BspT104I | TTCGAA | 1 cut(s) | 2911 |
| BspT107I | GGYRCC | 2 cut(s) | 2567, 2973 |
| BspTI | CTTAAG | 1 cut(s) | 3037 |
| BspTNI | GGTCTC | 3 cut(s) | 2549, 2604, 3446 |
| BsrDI | GCAATG | 3 cut(s) | 541, 1769, 2455 |
| BsrI | ACTGG | 8 cut(s) | 620, 669, 748, 1213, 1614, 2092, 2300, 2600 |
| BssMI | GATC | 7 cut(s) | 381, 754, 919, 1590, 1825, 2590, 3115 |
| BssT1I | CCWWGG | 8 cut(s) | 176, 304, 855, 945, 1467, 2398, 3283, 3747 |
| Bst2UI | CCWGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| Bst4CI | ACNGT | 4 cut(s) | 81, 249, 1852, 3005 |
| Bst6I | CTCTTC | 2 cut(s) | 1094, 3598 |
| BstAFI | CTTAAG | 1 cut(s) | 3037 |
| BstBAI | YACGTR | 1 cut(s) | 321 |
| BstBI | TTCGAA | 1 cut(s) | 2911 |
| BstDSI | CCRYGG | 2 cut(s) | 176, 855 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3746 |
| BstF5I | GGATG | 9 cut(s) | 39, 631, 772, 823, 1053, 1129, 1781, 2305, 3406 |
| BstH2I | RGCGCY | 1 cut(s) | 3226 |
| BstHHI | GCGC | 1 cut(s) | 3225 |
| BstKTI | GATC | 7 cut(s) | 384, 757, 922, 1593, 1828, 2593, 3118 |
| BstMBI | GATC | 7 cut(s) | 381, 754, 919, 1590, 1825, 2590, 3115 |
| BstNI | CCWGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| BstNSI | RCATGY | 5 cut(s) | 170, 2844, 3101, 3333, 3710 |
| BstSCI | CCNGG | 6 cut(s) | 1114, 1222, 1386, 1402, 3521, 3769 |
| BstSFI | CTRYAG | 7 cut(s) | 576, 812, 939, 1065, 3004, 3372, 3837 |
| BstV2I | GAAGAC | 1 cut(s) | 988 |
| BstX2I | RGATCY | 2 cut(s) | 381, 3115 |
| BstYI | RGATCY | 2 cut(s) | 381, 3115 |
| Bsu15I | ATCGAT | 1 cut(s) | 3630 |
| Bsu36I | CCTNAGG | 1 cut(s) | 992 |
| BsuI | GTATCC | 1 cut(s) | 1813 |
| BsuRI | GGCC | 7 cut(s) | 139, 668, 888, 999, 1270, 2314, 3012 |
| BsuTUI | ATCGAT | 1 cut(s) | 3630 |
| BtgI | CCRYGG | 2 cut(s) | 176, 855 |
| BtsCI | GGATG | 9 cut(s) | 39, 631, 772, 823, 1053, 1129, 1781, 2305, 3406 |
| BtsI | GCAGTG | 3 cut(s) | 433, 716, 1608 |
| BtsIMutI | CAGTG | 7 cut(s) | 86, 366, 433, 716, 1608, 2593, 3182 |
| CaiI | CAGNNNCTG | 2 cut(s) | 675, 3676 |
| CciI | TCATGA | 1 cut(s) | 1593 |
| CfoI | GCGC | 1 cut(s) | 3225 |
| Cfr13I | GGNCC | 7 cut(s) | 988, 997, 1268, 1684, 1793, 2848, 3280 |
| ClaI | ATCGAT | 1 cut(s) | 3630 |
| CsiI | ACCWGGT | 1 cut(s) | 1386 |
| Csp6I | GTAC | 4 cut(s) | 561, 1400, 2499, 2796 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 211, 246 |
| CviQI | GTAC | 4 cut(s) | 561, 1400, 2499, 2796 |
| DpnI | GATC | 7 cut(s) | 383, 756, 921, 1592, 1827, 2592, 3117 |
| DpnII | GATC | 7 cut(s) | 381, 754, 919, 1590, 1825, 2590, 3115 |
| DraI | TTTAAA | 1 cut(s) | 3307 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1299 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1299 |
| EaeI | YGGCCR | 2 cut(s) | 666, 3010 |
| Eam1104I | CTCTTC | 2 cut(s) | 1094, 3598 |
| EarI | CTCTTC | 2 cut(s) | 1094, 3598 |
| Ecl136II | GAGCTC | 1 cut(s) | 2836 |
| Eco130I | CCWWGG | 8 cut(s) | 176, 304, 855, 945, 1467, 2398, 3283, 3747 |
| Eco24I | GRGCYC | 1 cut(s) | 2838 |
| Eco31I | GGTCTC | 3 cut(s) | 2549, 2604, 3446 |
| Eco32I | GATATC | 1 cut(s) | 3739 |
| Eco47I | GGWCC | 5 cut(s) | 988, 1684, 1793, 2848, 3280 |
| Eco53kI | GAGCTC | 1 cut(s) | 2836 |
| Eco57I | CTGAAG | 4 cut(s) | 1025, 1892, 2787, 3537 |
| Eco81I | CCTNAGG | 1 cut(s) | 992 |
| Eco88I | CYCGRG | 1 cut(s) | 1785 |
| EcoICRI | GAGCTC | 1 cut(s) | 2836 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3746 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1684 |
| EcoRI | GAATTC | 1 cut(s) | 681 |
| EcoRII | CCWGG | 6 cut(s) | 1114, 1222, 1386, 1402, 3521, 3769 |
| EcoRV | GATATC | 1 cut(s) | 3739 |
| EcoT14I | CCWWGG | 8 cut(s) | 176, 304, 855, 945, 1467, 2398, 3283, 3747 |
| EcoT22I | ATGCAT | 2 cut(s) | 1284, 3099 |
| EcoT38I | GRGCYC | 1 cut(s) | 2838 |
| ErhI | CCWWGG | 8 cut(s) | 176, 304, 855, 945, 1467, 2398, 3283, 3747 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1487, 1519, 1539, 1571 |
| FaqI | GGGAC | 3 cut(s) | 1187, 1485, 1697 |
| FauNDI | CATATG | 2 cut(s) | 1278, 2068 |
| FbaI | TGATCA | 3 cut(s) | 754, 1590, 2590 |
| FblI | GTMKAC | 1 cut(s) | 3323 |
| FokI | GGATG | 9 cut(s) | 46, 638, 779, 830, 1060, 1136, 1768, 2312, 3413 |
| FriOI | GRGCYC | 1 cut(s) | 2838 |
| GlaI | GCGC | 1 cut(s) | 3224 |
| GsaI | CCCAGC | 1 cut(s) | 337 |
| GsuI | CTGGAG | 2 cut(s) | 106, 3131 |
| HaeII | RGCGCY | 1 cut(s) | 3226 |
| HaeIII | GGCC | 7 cut(s) | 139, 668, 888, 999, 1270, 2314, 3012 |
| HapII | CCGG | 1 cut(s) | 986 |
| HhaI | GCGC | 1 cut(s) | 3225 |
| Hin6I | GCGC | 1 cut(s) | 3223 |
| HinP1I | GCGC | 1 cut(s) | 3223 |
| HincII | GTYRAC | 3 cut(s) | 164, 2004, 2145 |
| HindII | GTYRAC | 3 cut(s) | 164, 2004, 2145 |
| HindIII | AAGCTT | 5 cut(s) | 358, 1393, 1724, 3072, 3545 |
| HpaI | GTTAAC | 1 cut(s) | 2145 |
| HpaII | CCGG | 1 cut(s) | 986 |
| HphI | GGTGA | 7 cut(s) | 833, 1223, 1597, 1973, 2414, 3616, 3629 |
| Hpy166II | GTNNAC | 6 cut(s) | 164, 2004, 2145, 2212, 2798, 3324 |
| Hpy8I | GTNNAC | 6 cut(s) | 164, 2004, 2145, 2212, 2798, 3324 |
| HpyAV | CCTTC | 7 cut(s) | 693, 723, 858, 971, 2133, 2811, 3794 |
| HpyCH4III | ACNGT | 4 cut(s) | 81, 249, 1852, 3005 |
| HpyCH4IV | ACGT | 1 cut(s) | 320 |
| HpySE526I | ACGT | 1 cut(s) | 320 |
| HspAI | GCGC | 1 cut(s) | 3223 |
| KflI | GGGWCCC | 1 cut(s) | 1684 |
| Ksp22I | TGATCA | 3 cut(s) | 754, 1590, 2590 |
| KspAI | GTTAAC | 1 cut(s) | 2145 |
| Kzo9I | GATC | 7 cut(s) | 381, 754, 919, 1590, 1825, 2590, 3115 |
| LmnI | GCTCC | 2 cut(s) | 241, 3150 |
| LweI | GCATC | 4 cut(s) | 24, 385, 757, 1995 |
| MabI | ACCWGGT | 1 cut(s) | 1386 |
| MaeII | ACGT | 1 cut(s) | 320 |
| MaeIII | GTNAC | 6 cut(s) | 541, 660, 2053, 2243, 2529, 2666 |
| MalI | GATC | 7 cut(s) | 383, 756, 921, 1592, 1827, 2592, 3117 |
| MboI | GATC | 7 cut(s) | 381, 754, 919, 1590, 1825, 2590, 3115 |
| MflI | RGATCY | 2 cut(s) | 381, 3115 |
| MhlI | GDGCHC | 2 cut(s) | 238, 2838 |
| MlsI | TGGCCA | 2 cut(s) | 668, 3012 |
| MluNI | TGGCCA | 2 cut(s) | 668, 3012 |
| MlyI | GAGTC | 5 cut(s) | 14, 2462, 3446, 3584, 3593 |
| MmeI | TCCRAC | 5 cut(s) | 1639, 2208, 2366, 3107, 3727 |
| Mox20I | TGGCCA | 2 cut(s) | 668, 3012 |
| Mph1103I | ATGCAT | 2 cut(s) | 1284, 3099 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1446, 3185 |
| MscI | TGGCCA | 2 cut(s) | 668, 3012 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2067, 2682 |
| Msp20I | TGGCCA | 2 cut(s) | 668, 3012 |
| MspA1I | CMGCKG | 2 cut(s) | 2109, 3734 |
| MspCI | CTTAAG | 1 cut(s) | 3037 |
| MspI | CCGG | 1 cut(s) | 986 |
| MspR9I | CCNGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| Mva1269I | GAATGC | 2 cut(s) | 2037, 2748 |
| MvaI | CCWGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| NcoI | CCATGG | 2 cut(s) | 176, 855 |
| NdeI | CATATG | 2 cut(s) | 1278, 2068 |
| NdeII | GATC | 7 cut(s) | 381, 754, 919, 1590, 1825, 2590, 3115 |
| NheI | GCTAGC | 3 cut(s) | 104, 1966, 2371 |
| NlaIV | GGNNCC | 6 cut(s) | 998, 1685, 1686, 2569, 2975, 3649 |
| NmuCI | GTSAC | 4 cut(s) | 541, 2053, 2243, 2666 |
| NsiI | ATGCAT | 2 cut(s) | 1284, 3099 |
| NspI | RCATGY | 5 cut(s) | 170, 2844, 3101, 3333, 3710 |
| NspV | TTCGAA | 1 cut(s) | 2911 |
| PaeI | GCATGC | 1 cut(s) | 3101 |
| PagI | TCATGA | 1 cut(s) | 1593 |
| PciI | ACATGT | 3 cut(s) | 2840, 3329, 3706 |
| PctI | GAATGC | 2 cut(s) | 2037, 2748 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1446, 3185 |
| PflFI | GACNNNGTC | 1 cut(s) | 3777 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2583 |
| PfoI | TCCNGGA | 1 cut(s) | 3769 |
| PleI | GAGTC | 5 cut(s) | 13, 2461, 3446, 3584, 3592 |
| PpsI | GAGTC | 5 cut(s) | 13, 2461, 3446, 3584, 3592 |
| Ppu21I | YACGTR | 1 cut(s) | 321 |
| PpuMI | RGGWCCY | 1 cut(s) | 1684 |
| PscI | ACATGT | 3 cut(s) | 2840, 3329, 3706 |
| PshBI | ATTAAT | 2 cut(s) | 483, 3660 |
| Psp124BI | GAGCTC | 1 cut(s) | 2838 |
| Psp5II | RGGWCCY | 1 cut(s) | 1684 |
| Psp6I | CCWGG | 6 cut(s) | 1114, 1222, 1386, 1402, 3521, 3769 |
| PspFI | CCCAGC | 1 cut(s) | 333 |
| PspGI | CCWGG | 6 cut(s) | 1114, 1222, 1386, 1402, 3521, 3769 |
| PspN4I | GGNNCC | 6 cut(s) | 998, 1685, 1686, 2569, 2975, 3649 |
| PspPI | GGNCC | 7 cut(s) | 988, 997, 1268, 1684, 1793, 2848, 3280 |
| PspPPI | RGGWCCY | 1 cut(s) | 1684 |
| PstI | CTGCAG | 1 cut(s) | 816 |
| PstNI | CAGNNNCTG | 2 cut(s) | 675, 3676 |
| PsuI | RGATCY | 2 cut(s) | 381, 3115 |
| PsyI | GACNNNGTC | 1 cut(s) | 3777 |
| PvuII | CAGCTG | 2 cut(s) | 2109, 3734 |
| RsaI | GTAC | 4 cut(s) | 562, 1401, 2500, 2797 |
| RsaNI | GTAC | 4 cut(s) | 561, 1400, 2499, 2796 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2067, 2682 |
| SacI | GAGCTC | 1 cut(s) | 2838 |
| Sau3AI | GATC | 7 cut(s) | 381, 754, 919, 1590, 1825, 2590, 3115 |
| Sau96I | GGNCC | 7 cut(s) | 988, 997, 1268, 1684, 1793, 2848, 3280 |
| ScaI | AGTACT | 1 cut(s) | 2500 |
| SchI | GAGTC | 5 cut(s) | 14, 2462, 3446, 3584, 3593 |
| ScrFI | CCNGG | 6 cut(s) | 1116, 1224, 1388, 1404, 3523, 3771 |
| SduI | GDGCHC | 2 cut(s) | 238, 2838 |
| SexAI | ACCWGGT | 1 cut(s) | 1386 |
| SfaNI | GCATC | 4 cut(s) | 24, 385, 757, 1995 |
| SfcI | CTRYAG | 7 cut(s) | 576, 812, 939, 1065, 3004, 3372, 3837 |
| SfuI | TTCGAA | 1 cut(s) | 2911 |
| SinI | GGWCC | 5 cut(s) | 988, 1684, 1793, 2848, 3280 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2067, 2682 |
| SmlI | CTYRAG | 7 cut(s) | 1168, 1263, 1556, 2047, 3037, 3614, 3696 |
| SmoI | CTYRAG | 7 cut(s) | 1168, 1263, 1556, 2047, 3037, 3614, 3696 |
| SphI | GCATGC | 1 cut(s) | 3101 |
| SsiI | CCGC | 3 cut(s) | 218, 770, 2657 |
| SspI | AATATT | 5 cut(s) | 1186, 1954, 2632, 3490, 3683 |
| SstI | GAGCTC | 1 cut(s) | 2838 |
| StyD4I | CCNGG | 6 cut(s) | 1114, 1222, 1386, 1402, 3521, 3769 |
| StyI | CCWWGG | 8 cut(s) | 176, 304, 855, 945, 1467, 2398, 3283, 3747 |
| TaaI | ACNGT | 4 cut(s) | 81, 249, 1852, 3005 |
| TaiI | ACGT | 1 cut(s) | 323 |
| TaqI | TCGA | 4 cut(s) | 2911, 3555, 3630, 3850 |
| TatI | WGTACW | 1 cut(s) | 2498 |
| TscAI | CASTG | 7 cut(s) | 86, 373, 440, 723, 1615, 2600, 3182 |
| TseFI | GTSAC | 4 cut(s) | 541, 2053, 2243, 2666 |
| Tsp45I | GTSAC | 4 cut(s) | 541, 2053, 2243, 2666 |
| TspGWI | ACGGA | 4 cut(s) | 670, 1661, 1989, 2749 |
| TspRI | CASTG | 7 cut(s) | 86, 373, 440, 723, 1615, 2600, 3182 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3777 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2583 |
| Vha464I | CTTAAG | 1 cut(s) | 3037 |
| VpaK11BI | GGWCC | 5 cut(s) | 988, 1684, 1793, 2848, 3280 |
| VspI | ATTAAT | 2 cut(s) | 483, 3660 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3746 |
| XapI | RAATTY | 8 cut(s) | 681, 836, 1652, 1918, 2280, 3181, 3234, 3247 |
| XbaI | TCTAGA | 1 cut(s) | 797 |
| XceI | RCATGY | 5 cut(s) | 170, 2844, 3101, 3333, 3710 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1474, 2405 |
| XmiI | GTMKAC | 1 cut(s) | 3323 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1446, 3185 |
| ZrmI | AGTACT | 1 cut(s) | 2500 |
| Zsp2I | ATGCAT | 2 cut(s) | 1284, 3099 |