Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010193

Physical Location & Seq

Genomic Coordinates Forward (+)

18985980 .. 18986531

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTTGGTTGAAAAGGAGATATCAAGCGTTGTTGGCGGCAGTGGCGGTGGTTGTGTGGTGGGCGATGATGGCGACGATGATGACGACGAATGCGGCAGTGGTAGCGGTGGGTCCCACGGAAGATGCAGATGCAGTGAGGAGAAGGCGAAGAAGCAGAGAGGGTTTAGTGCTGGTGGGTTGTCGAGAAATTTCGGAAGGGCCAAGCTGGTGGTCCTTCATCCGTTTGGAAGATCCAAAAAGCTGCTTCCCAGAAAAGCCAAGACAAGGGGTTCTGCTTCTGGACCTTCTTCTTTGGGGTCGTCTTGTGCTTTTTCTTCAGGTAAGATGTTTGGAGGAGGTGGCGTTAACGGCGGTGGTAATAAAGGTTGTTACTTTTGTTTCACGAAACCCCCAACTTTGGACTCTCCAATGGGGTCTCCAACCAGCGACCCTGAGCACCCAAATTTCACCTTTGGGATGTTGAGAGCTTTTGTGGAGAGCAATGAATTTTATTCCAAAGATTGCAATCCCCACTTAGATATTGATGTTTCCCCTTATAAAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

19.06

Weight (kDa)

8.1

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05935 AT3G05935 AT3G05935 AT3G05935 AT3G05935 AT5G26720
fragaria_vesca	FvH4_6g08770
malus_domestica	MD04G1183800.v1.1 MD12G1197100.v1.1
prunus_persica	Prupe.6G302400_v2.0.a1
pyrus_communis	pycom04g16260
rosa_chinensis	RchiOBHm_Chr3g0459031
rosa_multiflora	Rmu_sc0004343.1_g000019 Rmu_sc0039771.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420580
rosa_rugosa	Rorug03G0032900
rosa_samantha	Rh3AG090800 Rh3BG093800 Rh3CG094100 Rh3DG094400
rosa_wichuraiana	Rw3G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	540
AciI	CCGC	5 cut(s)	39, 48, 96, 108, 354
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	190, 445, 488
AcuI	CTGAAG	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	267, 400
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	3 cut(s)	208, 244, 470
AluI	AGCT	3 cut(s)	208, 244, 470
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	3 cut(s)	190, 445, 488
AspS9I	GGNCC	4 cut(s)	114, 201, 214, 284
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	3 cut(s)	114, 214, 284
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	423
BisI	GCNGC	3 cut(s)	40, 97, 245
BlsI	GCNGC	3 cut(s)	41, 98, 246
Bme18I	GGWCC	3 cut(s)	114, 214, 284
BmgT120I	GGNCC	4 cut(s)	114, 201, 214, 284
BmiI	GGNNCC	2 cut(s)	115, 116
BmsI	GCATC	2 cut(s)	116, 122
Bpu10I	CCTNAGC	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 400
Bse3DI	GCAATG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	220, 465
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	267, 400
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	426
BseRI	GAGGAG	2 cut(s)	155, 351
BseXI	GCAGC	1 cut(s)	231
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	267, 400
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	233
BspACI	CCGC	5 cut(s)	39, 48, 96, 108, 354
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	115, 116
BspPI	GGATC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	435, 517
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	220, 465
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 45, 72, 105, 351
BstV1I	GCAGC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	233
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	220, 465
BtsI	GCAGTG	3 cut(s)	49, 106, 142
BtsIMutI	CAGTG	3 cut(s)	49, 106, 142
Cfr13I	GGNCC	4 cut(s)	114, 201, 214, 284
CviJI	RGCY	5 cut(s)	203, 208, 244, 260, 470
CviKI_1	RGCY	5 cut(s)	203, 208, 244, 260, 470
DdeI	CTNAG	2 cut(s)	435, 517
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	3 cut(s)	114, 214, 284
Eco57I	CTGAAG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	24
FaiI	YATR	1 cut(s)	540
FaqI	GGGAC	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	40, 97, 245
FokI	GGATG	2 cut(s)	207, 472
Fsp4HI	GCNGC	3 cut(s)	40, 97, 245
GluI	GCNGC	3 cut(s)	40, 97, 245
HaeIII	GGCC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	404
HpaI	GTTAAC	1 cut(s)	349
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	3 cut(s)	186, 282, 385
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	2 cut(s)	80, 92
HpyAV	CCTTC	4 cut(s)	139, 192, 227, 297
HpyCH4V	TGCA	3 cut(s)	129, 135, 507
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 45, 72, 105, 351
HpyF3I	CTNAG	2 cut(s)	435, 517
KflI	GGGWCCC	1 cut(s)	114
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	159, 194, 265, 267, 306, 439, 447
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	2 cut(s)	116, 122
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	5 cut(s)	135, 163, 243, 282, 309
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	3 cut(s)	190, 445, 488
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	446
MnlI	CCTC	4 cut(s)	133, 155, 329, 332
MseI	TTAA	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	36, 45, 72, 105, 351
NdeII	GATC	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	115, 116
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	41, 98, 246
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PpuMI	RGGWCCY	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	115, 116
PspPI	GGNCC	4 cut(s)	114, 201, 214, 284
PspPPI	RGGWCCY	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	3 cut(s)	40, 97, 245
Sau3AI	GATC	1 cut(s)	233
Sau96I	GGNCC	4 cut(s)	114, 201, 214, 284
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	8 cut(s)	210, 246, 289, 325, 343, 370, 455, 472
SfaNI	GCATC	2 cut(s)	116, 122
SinI	GGWCC	3 cut(s)	114, 214, 284
Sse9I	AATT	3 cut(s)	190, 445, 488
SsiI	CCGC	5 cut(s)	39, 48, 96, 108, 354
TaqI	TCGA	1 cut(s)	185
TasI	AATT	3 cut(s)	190, 445, 488
TauI	GCSGC	2 cut(s)	42, 99
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	3 cut(s)	49, 106, 142
TseI	GCWGC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	209, 501
TspGWI	ACGGA	2 cut(s)	135, 213
TspRI	CASTG	3 cut(s)	49, 106, 142
VpaK11BI	GGWCC	3 cut(s)	114, 214, 284
XapI	RAATTY	3 cut(s)	190, 445, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.