MD04G1190100.v1.1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0019773
Physical Location & Seq
Forward (+)
28021308 .. 28022642
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1190100.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGGCTCTTCTCATCACAAACCAAGGCCACTCCCTCCGCTTGGCCTCATTTCTCATGCTAATTTTGGCCTTCTGCTCCTCGAAGGCATTTTGTAGTCGCCAACTTTATGGCGACAACGAAATCACGGTTGTCAGGCATGAGGAGTGGATGGCTCAACATGGACGCACTTATAATGGTGCACAAGAGAAGGAGATGCGCCACAACATATTCAAGAACAATGTGGAATTTGTACAAGCTTTTAACAAAAATAAGGAGGGAAAAAAGTACACGCTGAGTGTCAATAAGTTTGCGGACAAAACTAACGAGGAAATTCGGCCAATGCGCAACGGCTACAAGAGAAAGCAACGTTCAGGGCTCATGTCCGACTCTTTGATAGCATCTCCTTTTCGATATGGAAATGTCAGTAATGTGCCATCTTCTGTGGATTGGAGATTGTCTGGCGCTGTGACCGCGGTCAAGAACCAAGGATATGAGTGTGGGTGTTGTTGGGCGTTCGCATCAGTAGCAACTATAGAAGGGCTTAACAAACTCAAAACAAGAAACTTAATTCCACTATCCGAACAAGAGCTAGTTGATTGTGACACGAGCAGTTACAATCACGGATGCAATGGCGGTAATTCAAAGGTTGCGTATGACTACATGATCAACCGCAACAGGAGCCTTGCAACTGAAGATAATTACCCTTACCAGGCTAAAGATGGAGGAATTTGCAAAACTGCTAGTGCTGCTCCTGCAGCTGGTGCCATGACCATAACCGGCTACGAGAATGTGCCTGCAAACAACGAAGATGCATTGTTGAAGGCTGTTGCGAACCAGCCGGTTTCTGTTGCCATTGATATTGACGCAGAGGAATTCAAGTATTATTCGGGTGGTGTGTACACTGGACCATGTGGTACAAACTTAAGCCATGAAGTGACTGCAGTCGGGTACGGTACTAGTAATGATGGGACCAAGTATTGGCTGCTCAAGAATTCTTGGGGCAAAGATTGGGGAGAGGGTGGATACATGAGATTACAAAGAGACGTGCCCGCCAAGGAAGGGTTATGCGGCATTGCTATGGAAGCTACTTATCCAACCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009791 GO:0009814 GO:0009817 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010224 GO:0010282 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0034284 GO:0034285 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046688 GO:0048366 GO:0048367 GO:0048437 GO:0048468 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0080187 GO:0090567 GO:0090693 GO:0097501 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1990169
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

361

Amino Acids

39.7

Weight (kDa)

7.94

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 46 - 104 5e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 137 - 359 1.4e-73 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019773)

Species Orthologous Gene IDs
malus_domestica MD04G1190100.v1.1 MD04G1190200.v1.1 MD12G1202900.v1.1 MD12G1203000.v1.1
prunus_persica Prupe.4G153800_v2.0.a1
pyrus_communis pycom04g16840 pycom12g18940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
Acc16I TGCGCA 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 740
AccB7I CCANNNNNTGG 1 cut(s) 957
AccII CGCG 1 cut(s) 452
AciI CCGC 9 cut(s) 37, 290, 450, 452, 612, 649, 1029, 1047, 1077
AclI AACGTT 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 5 cut(s) 224, 309, 705, 851, 970
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 6 cut(s) 231, 266, 878, 895, 929, 934
AfiI CCNNNNNNNGG 5 cut(s) 40, 688, 737, 957, 1038
AflII CTTAAG 1 cut(s) 901
AgsI TTSAA 4 cut(s) 211, 621, 799, 856
AhlI ACTAGT 1 cut(s) 935
AjiI CACGTC 1 cut(s) 1024
AjnI CCWGG 1 cut(s) 687
AluBI AGCT 4 cut(s) 236, 568, 737, 1064
AluI AGCT 4 cut(s) 236, 568, 737, 1064
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 1014
Alw44I GTGCAC 1 cut(s) 177
AoxI GGCC 4 cut(s) 25, 42, 66, 314
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 725, 734, 961
ApoI RAATTY 5 cut(s) 224, 309, 705, 851, 970
AspLEI GCGC 3 cut(s) 198, 324, 443
AspS9I GGNCC 2 cut(s) 884, 948
AvaII GGWCC 2 cut(s) 884, 948
BaeGI GKGCMC 2 cut(s) 181, 1029
BanI GGYRCC 1 cut(s) 740
BanII GRGCYC 1 cut(s) 357
BauI CACGAG 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 712, 746, 948
BccI CCATC 4 cut(s) 142, 421, 692, 938
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 689
BciVI GTATCC 1 cut(s) 995
BclI TGATCA 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 1014
BcuI ACTAGT 1 cut(s) 935
BfaI CTAG 3 cut(s) 569, 720, 936
BfmI CTRYAG 3 cut(s) 510, 732, 918
BfoI RGCGCY 1 cut(s) 444
BfrI CTTAAG 1 cut(s) 901
BfuI GTATCC 1 cut(s) 995
BisI GCNGC 4 cut(s) 726, 735, 962, 1048
BlsI GCNGC 4 cut(s) 727, 736, 963, 1049
Bme1390I CCNGG 1 cut(s) 689
Bme18I GGWCC 2 cut(s) 884, 948
BmgBI CACGTC 1 cut(s) 1024
BmgT120I GGNCC 2 cut(s) 884, 948
BmiI GGNNCC 3 cut(s) 659, 742, 949
BmrFI CCNGG 1 cut(s) 689
BmsI GCATC 5 cut(s) 183, 386, 506, 593, 778
BoxI GACNNNNGTC 2 cut(s) 452, 920
BpuEI CTTGAG 1 cut(s) 950
BsaJI CCNNGG 4 cut(s) 22, 450, 463, 1032
Bsc4I CCNNNNNNNGG 5 cut(s) 40, 688, 737, 957, 1038
Bse118I RCCGGY 2 cut(s) 755, 817
Bse1I ACTGG 1 cut(s) 886
Bse3DI GCAATG 2 cut(s) 613, 1050
BseBI CCWGG 1 cut(s) 689
BseDI CCNNGG 4 cut(s) 22, 450, 463, 1032
BseGI GGATG 2 cut(s) 153, 608
BseLI CCNNNNNNNGG 5 cut(s) 40, 688, 737, 957, 1038
BseMI GCAATG 2 cut(s) 613, 1050
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 886
BseRI GAGGAG 2 cut(s) 67, 155
BseSI GKGCMC 2 cut(s) 181, 1029
BseXI GCAGC 3 cut(s) 712, 746, 948
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 4 cut(s) 27, 44, 68, 316
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 756, 818
BslFI GGGAC 1 cut(s) 961
BslI CCNNNNNNNGG 5 cut(s) 40, 688, 737, 957, 1038
BsmAI GTCTC 1 cut(s) 1014
BsmBI CGTCTC 1 cut(s) 1014
BsmFI GGGAC 1 cut(s) 961
BsnI GGCC 4 cut(s) 27, 44, 68, 316
Bsp1286I GDGCHC 3 cut(s) 181, 357, 1029
Bsp1407I TGTACA 2 cut(s) 229, 876
Bsp143I GATC 1 cut(s) 642
BspACI CCGC 9 cut(s) 37, 290, 450, 452, 612, 649, 1029, 1047, 1077
BspANI GGCC 4 cut(s) 27, 44, 68, 316
BspCNI CTCAG 1 cut(s) 264
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 3 cut(s) 659, 742, 949
BspMAI CTGCAG 2 cut(s) 736, 922
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 740
BspTI CTTAAG 1 cut(s) 901
BsrDI GCAATG 2 cut(s) 613, 1050
BsrFI RCCGGY 2 cut(s) 755, 817
BsrGI TGTACA 2 cut(s) 229, 876
BsrI ACTGG 1 cut(s) 886
BssAI RCCGGY 2 cut(s) 755, 817
BssECI CCNNGG 4 cut(s) 22, 450, 463, 1032
BssMI GATC 1 cut(s) 642
BssSI CACGAG 1 cut(s) 583
BssT1I CCWWGG 3 cut(s) 22, 463, 1032
Bst2BI CACGAG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 2 cut(s) 127, 932
Bst6I CTCTTC 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 901
BstAPI GCANNNNNTGC 1 cut(s) 740
BstAUI TGTACA 2 cut(s) 229, 876
BstC8I GCNNGC 2 cut(s) 774, 1029
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 153, 608
BstFNI CGCG 1 cut(s) 452
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 3 cut(s) 198, 324, 443
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 1 cut(s) 1014
BstMBI GATC 1 cut(s) 642
BstMWI GCNNNNNNNGC 8 cut(s) 449, 503, 657, 725, 731, 734, 740, 1061
BstNI CCWGG 1 cut(s) 689
BstPAI GACNNNNGTC 2 cut(s) 452, 920
BstSCI CCNGG 1 cut(s) 687
BstSFI CTRYAG 3 cut(s) 510, 732, 918
BstSLI GKGCMC 2 cut(s) 181, 1029
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 712, 746, 948
BstXI CCANNNNNNTGG 1 cut(s) 107
BsuI GTATCC 1 cut(s) 995
BsuRI GGCC 4 cut(s) 27, 44, 68, 316
BtgI CCRYGG 1 cut(s) 450
BtrI CACGTC 1 cut(s) 1024
BtsCI GGATG 2 cut(s) 153, 608
BtsIMutI CAGTG 1 cut(s) 879
Cac8I GCNNGC 2 cut(s) 774, 1029
CfoI GCGC 3 cut(s) 198, 324, 443
Cfr10I RCCGGY 2 cut(s) 755, 817
Cfr13I GGNCC 2 cut(s) 884, 948
Cfr42I CCGCGG 1 cut(s) 453
CseI GACGC 2 cut(s) 171, 851
Csp6I GTAC 6 cut(s) 230, 265, 877, 894, 928, 933
CviAII CATG 9 cut(s) 55, 137, 158, 358, 640, 745, 888, 908, 1006
CviQI GTAC 6 cut(s) 230, 265, 877, 894, 928, 933
DdeI CTNAG 1 cut(s) 272
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 3 cut(s) 22, 463, 1032
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 2 cut(s) 884, 948
Eco57I CTGAAG 1 cut(s) 690
EcoRI GAATTC 2 cut(s) 851, 970
EcoRII CCWGG 1 cut(s) 687
EcoT14I CCWWGG 3 cut(s) 22, 463, 1032
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 3 cut(s) 22, 463, 1032
Esp3I CGTCTC 1 cut(s) 1014
FaeI CATG 9 cut(s) 58, 140, 161, 361, 643, 748, 891, 911, 1009
FaqI GGGAC 1 cut(s) 961
FatI CATG 9 cut(s) 54, 136, 157, 357, 639, 744, 887, 907, 1005
FauI CCCGC 1 cut(s) 1036
FbaI TGATCA 1 cut(s) 642
Fnu4HI GCNGC 4 cut(s) 726, 735, 962, 1048
FokI GGATG 2 cut(s) 160, 615
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 4 cut(s) 726, 735, 962, 1048
FspBI CTAG 3 cut(s) 569, 720, 936
FspI TGCGCA 1 cut(s) 323
GlaI GCGC 3 cut(s) 197, 323, 442
GluI GCNGC 4 cut(s) 726, 735, 962, 1048
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 4 cut(s) 27, 44, 68, 316
HapII CCGG 2 cut(s) 756, 818
HgaI GACGC 2 cut(s) 171, 851
HhaI GCGC 3 cut(s) 198, 324, 443
Hin1II CATG 9 cut(s) 58, 140, 161, 361, 643, 748, 891, 911, 1009
Hin6I GCGC 3 cut(s) 196, 322, 441
HinP1I GCGC 3 cut(s) 196, 322, 441
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 1 cut(s) 365
HpaII CCGG 2 cut(s) 756, 818
Hpy166II GTNNAC 4 cut(s) 179, 267, 877, 879
Hpy188I TCNGA 2 cut(s) 364, 559
Hpy188III TCNNGA 3 cut(s) 211, 457, 967
Hpy8I GTNNAC 4 cut(s) 179, 267, 877, 879
HpyAV CCTTC 6 cut(s) 76, 79, 181, 509, 793, 1031
HpyCH4III ACNGT 2 cut(s) 127, 932
HpyCH4IV ACGT 2 cut(s) 346, 1023
HpyCH4V TGCA 8 cut(s) 179, 606, 665, 711, 734, 776, 791, 920
HpyF10VI GCNNNNNNNGC 8 cut(s) 449, 503, 657, 725, 731, 734, 740, 1061
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 2 cut(s) 346, 1023
Hsp92II CATG 9 cut(s) 58, 140, 161, 361, 643, 748, 891, 911, 1009
HspAI GCGC 3 cut(s) 196, 322, 441
Ksp22I TGATCA 1 cut(s) 642
KspI CCGCGG 1 cut(s) 453
Kzo9I GATC 1 cut(s) 642
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 3 cut(s) 80, 657, 733
Lsp1109I GCAGC 3 cut(s) 712, 746, 948
LweI GCATC 5 cut(s) 183, 386, 506, 593, 778
MaeI CTAG 3 cut(s) 569, 720, 936
MaeII ACGT 2 cut(s) 346, 1023
MaeIII GTNAC 4 cut(s) 445, 578, 590, 913
MalI GATC 1 cut(s) 644
MboI GATC 1 cut(s) 642
MboII GAAGA 3 cut(s) 408, 683, 797
MhlI GDGCHC 3 cut(s) 181, 357, 1029
MluCI AATT 9 cut(s) 60, 224, 309, 546, 616, 676, 705, 851, 970
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 9 cut(s) 44, 55, 88, 133, 247, 298, 695, 841, 988
Mph1103I ATGCAT 1 cut(s) 793
MseI TTAA 4 cut(s) 240, 522, 545, 902
MslI CAYNNNNRTG 1 cut(s) 1055
MspA1I CMGCKG 2 cut(s) 452, 737
MspCI CTTAAG 1 cut(s) 901
MspI CCGG 2 cut(s) 756, 818
MspR9I CCNGG 1 cut(s) 689
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 8 cut(s) 449, 503, 657, 725, 731, 734, 740, 1061
NdeII GATC 1 cut(s) 642
NlaIII CATG 9 cut(s) 58, 140, 161, 361, 643, 748, 891, 911, 1009
NlaIV GGNNCC 3 cut(s) 659, 742, 949
NmuCI GTSAC 3 cut(s) 445, 578, 913
NsbI TGCGCA 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 957
PkrI GCNGC 4 cut(s) 727, 736, 963, 1049
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PshAI GACNNNNGTC 2 cut(s) 452, 920
PsiI TTATAA 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 687
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 3 cut(s) 659, 742, 949
PspPI GGNCC 2 cut(s) 884, 948
PstI CTGCAG 2 cut(s) 736, 922
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 6 cut(s) 231, 266, 878, 895, 929, 934
RsaNI GTAC 6 cut(s) 230, 265, 877, 894, 928, 933
RseI CAYNNNNRTG 1 cut(s) 1055
SacII CCGCGG 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 240, 522, 545, 902
SatI GCNGC 4 cut(s) 726, 735, 962, 1048
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 2 cut(s) 884, 948
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 689
SduI GDGCHC 3 cut(s) 181, 357, 1029
SetI ASST 7 cut(s) 238, 349, 570, 627, 739, 1026, 1066
SfaNI GCATC 5 cut(s) 183, 386, 506, 593, 778
SfcI CTRYAG 3 cut(s) 510, 732, 918
Sfr303I CCGCGG 1 cut(s) 453
SgrBI CCGCGG 1 cut(s) 453
SinI GGWCC 2 cut(s) 884, 948
SmiMI CAYNNNNRTG 1 cut(s) 1055
SmlI CTYRAG 2 cut(s) 901, 965
SmoI CTYRAG 2 cut(s) 901, 965
SpeI ACTAGT 1 cut(s) 935
Sse9I AATT 9 cut(s) 60, 224, 309, 546, 616, 676, 705, 851, 970
SsiI CCGC 9 cut(s) 37, 290, 450, 452, 612, 649, 1029, 1047, 1077
SspMI CTAG 3 cut(s) 569, 720, 936
StyD4I CCNGG 1 cut(s) 687
StyI CCWWGG 3 cut(s) 22, 463, 1032
TaaI ACNGT 2 cut(s) 127, 932
TaiI ACGT 2 cut(s) 349, 1026
TaqI TCGA 2 cut(s) 80, 388
TasI AATT 9 cut(s) 60, 224, 309, 546, 616, 676, 705, 851, 970
TatI WGTACW 3 cut(s) 229, 264, 876
TauI GCSGC 1 cut(s) 1050
Tru1I TTAA 4 cut(s) 240, 522, 545, 902
Tru9I TTAA 4 cut(s) 240, 522, 545, 902
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 3 cut(s) 445, 578, 913
TseI GCWGC 3 cut(s) 725, 734, 961
Tsp45I GTSAC 3 cut(s) 445, 578, 913
TspDTI ATGAA 1 cut(s) 924
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 1 cut(s) 886
Van91I CCANNNNNTGG 1 cut(s) 957
Vha464I CTTAAG 1 cut(s) 901
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 884, 948
XapI RAATTY 5 cut(s) 224, 309, 705, 851, 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XspI CTAG 3 cut(s) 569, 720, 936
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.