MD12G1203000.v1.1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0019773
Physical Location & Seq
Forward (+)
28318869 .. 28320089
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1203000.v1.1.491

Sequence Viewer

Length: 966 bp
ATGTTGGAGAGGCATGAGGAGTGGATGGCTCGACATGGACGTGTTTACAAGGATGCACAAGAGAAGGAGAGGCGTTACAACACATTCAAGCCTAATAATGTGGAGTTTATAAAAGGTTTTAACAAGAAGGGCGAAAACCAGTACACACTCGGCATCAATAAATTTGCAGACCTAACTAATGAGGAGTTTGAGGCGATGCATAAAGGCTACAAGAGGAGACACCTCCCGGAGATCATGTCCAACTCTGTGAAAGCAGCTCCAAATAACAATTTTGGATATGAAAATGTCACCGATGTGCCAAAATCCAAGGATTATTTTTCACTTGGCTCTGTGACCACTGTCAAAGACCAAAGACAATGTGGGTGTGGCTGGGCATTCTCGGCAGTAGCAGCCATAGAAGGGCTTAACTTTCTCAAAACAAGAAACATAGTTTCGCTATCAGAGCAAGAGCTGGTTGATTGCGATGTTGGTCTTGTGAACGATGGTTGCCATTATGGCGAGGTGGGTTATGCCTTCGAATACATGATTGAGCGAAACAGGAGCCTGGCAACAGATGCTGATTACGGTTACAAGGGTAGAGATGGAGGAAGTTGCAAGGCTGATGATTATAACAACACTGATGCTGCCATAACCGTAAAAGGATTTGAGCTTGACCCTGAAAACAATGAGACGGCTCTGCTGCAGGCTGTTGCAAACCAGCCAGTTTCTGTTGCCATTGATGACAATGGAGAATTTTTCCAGAATTATGCGGATAGTGTGTTCAGTGGACCATGCGGCACAAACTTAACCCATGCTGTGACTATCGTTGGATATGGCGAAGAAGATTGGAAAAAGTATTGGATGATCAAGAATTCTTGGGGAGAAGACTGGGGGGATAATGGGTACATGAAGTTGCAGAGAGACGTGCCTGCCGAGGAAGGACTCTGTGGCATCGCTATGGCAGCTTATTATCCAACATCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009791 GO:0009814 GO:0009817 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010224 GO:0010282 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0034284 GO:0034285 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046688 GO:0048366 GO:0048367 GO:0048437 GO:0048468 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0080187 GO:0090567 GO:0090693 GO:0097501 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1990169
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

322

Amino Acids

36.15

Weight (kDa)

4.89

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 5 - 63 2.5e-17 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 99 - 319 5.7e-66 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019773)

Species Orthologous Gene IDs
malus_domestica MD04G1190100.v1.1 MD04G1190200.v1.1 MD12G1202900.v1.1 MD12G1203000.v1.1
prunus_persica Prupe.4G153800_v2.0.a1
pyrus_communis pycom04g16840 pycom12g18940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 110, 609
AciI CCGC 2 cut(s) 749, 774
AcsI RAATTY 3 cut(s) 161, 731, 850
AfaI GTAC 2 cut(s) 143, 884
AfiI CCNNNNNNNGG 1 cut(s) 399
AflIII ACRYGT 1 cut(s) 40
AgsI TTSAA 1 cut(s) 88
AjiI CACGTC 2 cut(s) 41, 904
AjnI CCWGG 1 cut(s) 543
AleI CACNNNNGTG 1 cut(s) 293
AloI GAACNNNNNNTCC 2 cut(s) 743, 775
AluBI AGCT 4 cut(s) 257, 451, 649, 944
AluI AGCT 4 cut(s) 257, 451, 649, 944
Alw26I GTCTC 3 cut(s) 211, 662, 894
AlwNI CAGNNNCTG 2 cut(s) 557, 707
ApeKI GCWGC 5 cut(s) 254, 389, 623, 679, 941
ApoI RAATTY 3 cut(s) 161, 731, 850
AspS9I GGNCC 1 cut(s) 767
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 516
AvaII GGWCC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 870
BbvI GCAGC 5 cut(s) 266, 401, 610, 666, 953
BccI CCATC 3 cut(s) 19, 476, 575
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 1 cut(s) 843
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 211, 662, 894
BfmI CTRYAG 1 cut(s) 680
BglI GCCNNNNNGGC 1 cut(s) 495
BisI GCNGC 6 cut(s) 255, 390, 624, 680, 775, 942
BlsI GCNGC 6 cut(s) 256, 391, 625, 681, 776, 943
Bme1390I CCNGG 2 cut(s) 227, 545
Bme18I GGWCC 1 cut(s) 767
BmgBI CACGTC 2 cut(s) 41, 904
BmgT120I GGNCC 1 cut(s) 767
BmiI GGNNCC 1 cut(s) 542
BmrFI CCNGG 2 cut(s) 227, 545
BmrI ACTGGG 1 cut(s) 877
BmsI GCATC 6 cut(s) 43, 162, 186, 544, 610, 939
BmuI ACTGGG 1 cut(s) 877
BoxI GACNNNNGTC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 870
Bpu14I TTCGAA 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 306, 912
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 3 cut(s) 139, 701, 872
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 306, 912
BseGI GGATG 3 cut(s) 30, 58, 846
BseLI CCNNNNNNNGG 1 cut(s) 399
BseNI ACTGG 3 cut(s) 139, 701, 872
BseRI GAGGAG 3 cut(s) 32, 197, 229
BseXI GCAGC 5 cut(s) 266, 401, 610, 666, 953
BseYI CCCAGC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 3 cut(s) 211, 662, 894
BsmBI CGTCTC 2 cut(s) 662, 894
BsmI GAATGC 1 cut(s) 374
Bsp119I TTCGAA 1 cut(s) 516
Bsp143I GATC 2 cut(s) 231, 843
BspACI CCGC 2 cut(s) 749, 774
BspLI GGNNCC 1 cut(s) 542
BspMAI CTGCAG 1 cut(s) 684
BspT104I TTCGAA 1 cut(s) 516
BsrI ACTGG 3 cut(s) 139, 701, 872
BssECI CCNNGG 2 cut(s) 306, 912
BssMI GATC 2 cut(s) 231, 843
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 3 cut(s) 340, 566, 634
BstAPI GCANNNNNTGC 1 cut(s) 554
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 684, 909
BstF5I GGATG 3 cut(s) 30, 58, 846
BstKTI GATC 2 cut(s) 234, 846
BstMAI GTCTC 3 cut(s) 211, 662, 894
BstMBI GATC 2 cut(s) 231, 843
BstMWI GCNNNNNNNGC 6 cut(s) 380, 389, 442, 495, 554, 941
BstNI CCWGG 1 cut(s) 545
BstPAI GACNNNNGTC 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 225, 543
BstSFI CTRYAG 1 cut(s) 680
BstV1I GCAGC 5 cut(s) 266, 401, 610, 666, 953
BstV2I GAAGAC 1 cut(s) 870
BtgZI GCGATG 3 cut(s) 209, 477, 916
BtrI CACGTC 2 cut(s) 41, 904
BtsCI GGATG 3 cut(s) 30, 58, 846
BtsIMutI CAGTG 3 cut(s) 336, 615, 769
Cac8I GCNNGC 2 cut(s) 684, 909
CaiI CAGNNNCTG 2 cut(s) 557, 707
Cfr13I GGNCC 1 cut(s) 767
Csp6I GTAC 2 cut(s) 142, 883
CviAII CATG 7 cut(s) 14, 35, 235, 523, 771, 791, 886
CviQI GTAC 2 cut(s) 142, 883
DpnI GATC 2 cut(s) 233, 845
DpnII GATC 2 cut(s) 231, 843
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 767
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 2 cut(s) 662, 894
FaeI CATG 7 cut(s) 17, 38, 238, 526, 774, 794, 889
FatI CATG 7 cut(s) 13, 34, 234, 522, 770, 790, 885
FbaI TGATCA 1 cut(s) 843
Fnu4HI GCNGC 6 cut(s) 255, 390, 624, 680, 775, 942
FokI GGATG 3 cut(s) 37, 65, 853
Fsp4HI GCNGC 6 cut(s) 255, 390, 624, 680, 775, 942
GluI GCNGC 6 cut(s) 255, 390, 624, 680, 775, 942
GsaI CCCAGC 1 cut(s) 373
HapII CCGG 1 cut(s) 227
Hin1II CATG 7 cut(s) 17, 38, 238, 526, 774, 794, 889
HinfI GANTC 1 cut(s) 921
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 4 cut(s) 46, 144, 478, 767
Hpy188I TCNGA 2 cut(s) 442, 961
Hpy188III TCNNGA 2 cut(s) 739, 847
Hpy8I GTNNAC 4 cut(s) 46, 144, 478, 767
HpyAV CCTTC 5 cut(s) 58, 121, 392, 523, 911
HpyCH4III ACNGT 3 cut(s) 340, 566, 634
HpyCH4IV ACGT 2 cut(s) 40, 903
HpyCH4V TGCA 7 cut(s) 56, 167, 199, 594, 682, 692, 895
HpyF10VI GCNNNNNNNGC 6 cut(s) 380, 389, 442, 495, 554, 941
HpySE526I ACGT 2 cut(s) 40, 903
Hsp92II CATG 7 cut(s) 17, 38, 238, 526, 774, 794, 889
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 2 cut(s) 231, 843
LmnI GCTCC 2 cut(s) 262, 540
Lsp1109I GCAGC 5 cut(s) 266, 401, 610, 666, 953
LweI GCATC 6 cut(s) 43, 162, 186, 544, 610, 939
MaeII ACGT 2 cut(s) 40, 903
MaeIII GTNAC 5 cut(s) 74, 286, 331, 566, 796
MalI GATC 2 cut(s) 233, 845
MboI GATC 2 cut(s) 231, 843
MboII GAAGA 3 cut(s) 830, 833, 875
MluCI AATT 5 cut(s) 161, 268, 731, 742, 850
MlyI GAGTC 1 cut(s) 915
MmeI TCCRAC 2 cut(s) 264, 787
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 4 cut(s) 120, 405, 785, 964
MslI CAYNNNNRTG 3 cut(s) 39, 293, 935
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 227, 545
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 6 cut(s) 380, 389, 442, 495, 554, 941
NciI CCSGG 1 cut(s) 227
NdeII GATC 2 cut(s) 231, 843
NlaIII CATG 7 cut(s) 17, 38, 238, 526, 774, 794, 889
NlaIV GGNNCC 1 cut(s) 542
NmeAIII GCCGAG 3 cut(s) 129, 359, 937
NmuCI GTSAC 3 cut(s) 286, 331, 796
NsiI ATGCAT 1 cut(s) 201
NspV TTCGAA 1 cut(s) 516
OliI CACNNNNGTG 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 37, 909
PctI GAATGC 1 cut(s) 374
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 6 cut(s) 256, 391, 625, 681, 776, 943
PleI GAGTC 1 cut(s) 915
PpsI GAGTC 1 cut(s) 915
PshAI GACNNNNGTC 1 cut(s) 338
PsiI TTATAA 2 cut(s) 110, 609
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 542
PspPI GGNCC 1 cut(s) 767
PstI CTGCAG 1 cut(s) 684
PstNI CAGNNNCTG 2 cut(s) 557, 707
RsaI GTAC 2 cut(s) 143, 884
RsaNI GTAC 2 cut(s) 142, 883
RseI CAYNNNNRTG 3 cut(s) 39, 293, 935
SaqAI TTAA 4 cut(s) 120, 405, 785, 964
SatI GCNGC 6 cut(s) 255, 390, 624, 680, 775, 942
Sau3AI GATC 2 cut(s) 231, 843
Sau96I GGNCC 1 cut(s) 767
SchI GAGTC 1 cut(s) 915
ScrFI CCNGG 2 cut(s) 227, 545
SfaNI GCATC 6 cut(s) 43, 162, 186, 544, 610, 939
SfcI CTRYAG 1 cut(s) 680
SfuI TTCGAA 1 cut(s) 516
SinI GGWCC 1 cut(s) 767
SmiMI CAYNNNNRTG 3 cut(s) 39, 293, 935
Sse9I AATT 5 cut(s) 161, 268, 731, 742, 850
SsiI CCGC 2 cut(s) 749, 774
StyD4I CCNGG 2 cut(s) 225, 543
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 340, 566, 634
TaiI ACGT 2 cut(s) 43, 906
TaqI TCGA 2 cut(s) 31, 516
TasI AATT 5 cut(s) 161, 268, 731, 742, 850
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 777
Tru1I TTAA 4 cut(s) 120, 405, 785, 964
Tru9I TTAA 4 cut(s) 120, 405, 785, 964
TscAI CASTG 3 cut(s) 343, 622, 769
TseFI GTSAC 3 cut(s) 286, 331, 796
TseI GCWGC 5 cut(s) 254, 389, 623, 679, 941
Tsp45I GTSAC 3 cut(s) 286, 331, 796
TspDTI ATGAA 2 cut(s) 294, 902
TspRI CASTG 3 cut(s) 343, 622, 769
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 3 cut(s) 161, 731, 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.