Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0020387

Physical Location & Seq

Genomic Coordinates Reverse (-)

31294613 .. 31303728

Gene Structure 9116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1234000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCATGTGTTGATCTGCTTGAAGTGATGCTAGTGGAACATCTGCAGAGGGTACAGGACTCTTTTTCAGTCAGATTAATTTCACAGGAAGTTCGAAGAATGAATTATGACGCAACCAGAAGGATAGTTTCTGCTGCTCCGCAATTGACTGAACCTCTTTTAGTTGAATTCACGAATTTCACGTCTGTAGTTGCGGGGAAACTTTGTATTTCAAAGTTAAGTGAAACAGATAATTCATTGGACACTCAAGTACCATTCCTCCCGTCGGTTGAGGTTTTAGTGAAGGCTTTAATTGTCATATCATCAGTAGCTCTACCTGCAGCTCCAAGTGCAGCGACACGAGTTTTGTTCTGTGCTCATCATCCATACTTGGTTGGAACTGCAAGGAGAGATGCAGTTTGGAAGAGGCTTCAAAGATGTATGCATGCATGTGGTTTTGACATCATTAGCAACATTTTGGCTGATGTGGAGAATTTGTTCAAGGGACTACTGGTACCAATGTTGTTGTCCAGCACTAATCCGTATGAACAGCAAGCAGCTCACCTGAAAAATCTTCCATATCGTTTTTCACATGATACACTTTCAGAGAATGATATTCGGATTTTTCATACCCCTGAAGGCTTGCTTTCCAGTGAGCAAGGTGTCTACATTGCAGAGTCTGTTGCTGCTAAGAACATGAAACAAGCAAAGGGCCGTTTTCGGATGTATGAAGACCTAGATGACATGGACCATGGTGGTTCTAATCATTCTGCAAAATTTGAGCAAACCAATAATTCTGTGGGTAAAAGGGAAACTGGGAAGTCTGCAAAGAAACCTGATAAAGGAAAGACTGCAAAGGAGGAAGCGCGTGAGGTACAACTTAGGGAGGAGGCATCCATACGTGAGAAGGTCCGAGAAATACAGACAAATCTGTCTTCCATACTTGCAGCTCTTGGGGAAATGGCAATTGCTAATCCTATTTTCGCACACAGTCAGATTCCTTCCTTGAAGATAATTGGGCTTGCTGATTTGCTCCTATCTCAGTGGTGGATGATCTTCGGCCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

350

Amino Acids

38.84

Weight (kDa)

6.8

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020387)

Species	Orthologous Gene IDs
malus_domestica	MD04G1234000.v1.1 MD08G1086100.v1.1
rosa_multiflora	Rmu_sc0000570.1_g000012
rosa_samantha	Rh2BG574200 Rh4AG169400
rosa_wichuraiana	Rw1G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	910
Acc36I	ACCTGC	1 cut(s)	325
Acc65I	GGTACC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	1 cut(s)	847
AciI	CCGC	2 cut(s)	140, 194
AcsI	RAATTY	4 cut(s)	167, 175, 472, 755
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	4 cut(s)	54, 252, 495, 855
AfiI	CCNNNNNNNGG	2 cut(s)	265, 821
AgsI	TTSAA	6 cut(s)	23, 167, 213, 413, 481, 988
AjiI	CACGTC	1 cut(s)	183
AloI	GAACNNNNNNTCC	2 cut(s)	461, 493
AluBI	AGCT	4 cut(s)	311, 323, 539, 929
AluI	AGCT	4 cut(s)	311, 323, 539, 929
Alw21I	GWGCWC	1 cut(s)	358
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	2 cut(s)	691, 1039
ApeKI	GCWGC	6 cut(s)	134, 320, 332, 536, 665, 926
ApoI	RAATTY	4 cut(s)	167, 175, 472, 755
ArsI	GACNNNNNNTTYG	4 cut(s)	167, 199, 328, 360
AseI	ATTAAT	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	476
Asp718I	GGTACC	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	3 cut(s)	691, 727, 889
AsuHPI	GGTGA	1 cut(s)	533
AsuII	TTCGAA	1 cut(s)	94
AvaII	GGWCC	2 cut(s)	727, 889
BaeI	ACNNNNGTAYC	4 cut(s)	234, 267, 485, 518
BanI	GGYRCC	1 cut(s)	493
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	2 cut(s)	717, 906
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	6 cut(s)	121, 332, 344, 548, 652, 938
BceAI	ACGGC	1 cut(s)	678
BfaI	CTAG	2 cut(s)	32, 716
BfmI	CTRYAG	3 cut(s)	44, 186, 318
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	6 cut(s)	135, 321, 333, 537, 666, 927
BlsI	GCNGC	6 cut(s)	136, 322, 334, 538, 667, 928
Bme18I	GGWCC	2 cut(s)	727, 889
BmgBI	CACGTC	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	691, 727, 889
BmiI	GGNNCC	1 cut(s)	495
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	3 cut(s)	18, 382, 881
BmuI	ACTGGG	1 cut(s)	804
BpiI	GAAGAC	2 cut(s)	717, 906
Bpu14I	TTCGAA	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	881
BsaJI	CCNNGG	1 cut(s)	730
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 821
Bse1I	ACTGG	3 cut(s)	495, 630, 799
Bse3DI	GCAATG	1 cut(s)	648
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	4 cut(s)	361, 708, 872, 1035
BseLI	CCNNNNNNNGG	2 cut(s)	265, 821
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	1034
BseNI	ACTGG	3 cut(s)	495, 630, 799
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	6 cut(s)	121, 332, 344, 548, 652, 938
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	847
BshFI	GGCC	2 cut(s)	693, 1041
BshNI	GGYRCC	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	265, 821
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	693, 1041
Bsp119I	TTCGAA	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	13, 1032
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	2 cut(s)	140, 194
BspANI	GGCC	2 cut(s)	693, 1041
BspCNI	CTCAG	1 cut(s)	1033
BspFNI	CGCG	1 cut(s)	847
BspLI	GGNNCC	1 cut(s)	495
BspMAI	CTGCAG	2 cut(s)	48, 322
BspMI	ACCTGC	1 cut(s)	325
BspT104I	TTCGAA	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	495, 630, 799
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	2 cut(s)	13, 1032
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	730
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	971
Bst6I	CTCTTC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	881
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	4 cut(s)	426, 534, 623, 1002
BstDEI	CTNAG	3 cut(s)	669, 860, 1020
BstDSI	CCRYGG	1 cut(s)	730
BstENI	CCTNNNNNAGG	1 cut(s)	819
BstF5I	GGATG	4 cut(s)	361, 708, 872, 1035
BstFNI	CGCG	1 cut(s)	847
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	2 cut(s)	16, 1035
BstMBI	GATC	2 cut(s)	13, 1032
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 329
BstNSI	RCATGY	3 cut(s)	9, 428, 432
BstSFI	CTRYAG	3 cut(s)	44, 186, 318
BstUI	CGCG	1 cut(s)	847
BstV1I	GCAGC	6 cut(s)	121, 332, 344, 548, 652, 938
BstV2I	GAAGAC	2 cut(s)	717, 906
BsuRI	GGCC	2 cut(s)	693, 1041
BtgI	CCRYGG	1 cut(s)	730
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	361, 708, 872, 1035
BtsIMutI	CAGTG	2 cut(s)	637, 1028
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	426, 534, 623, 1002
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	1 cut(s)	847
Cfr13I	GGNCC	3 cut(s)	691, 727, 889
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	4 cut(s)	53, 251, 494, 854
CviAII	CATG	7 cut(s)	6, 425, 429, 572, 676, 724, 731
CviQI	GTAC	4 cut(s)	53, 251, 494, 854
DdeI	CTNAG	3 cut(s)	669, 860, 1020
DpnI	GATC	2 cut(s)	15, 1034
DpnII	GATC	2 cut(s)	13, 1032
DrdI	GACNNNNNNGTC	1 cut(s)	910
DseDI	GACNNNNNNGTC	1 cut(s)	910
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	730
Eco47I	GGWCC	2 cut(s)	727, 889
Eco57I	CTGAAG	1 cut(s)	636
EcoNI	CCTNNNNNAGG	1 cut(s)	819
EcoRI	GAATTC	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	730
EcoT22I	ATGCAT	2 cut(s)	426, 430
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	7 cut(s)	9, 428, 432, 575, 679, 727, 734
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	7 cut(s)	5, 424, 428, 571, 675, 723, 730
FauI	CCCGC	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	6 cut(s)	135, 321, 333, 537, 666, 927
FokI	GGATG	4 cut(s)	348, 715, 859, 1042
Fsp4HI	GCNGC	6 cut(s)	135, 321, 333, 537, 666, 927
FspBI	CTAG	2 cut(s)	32, 716
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	6 cut(s)	135, 321, 333, 537, 666, 927
HaeIII	GGCC	2 cut(s)	693, 1041
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	7 cut(s)	9, 428, 432, 575, 679, 727, 734
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HinfI	GANTC	3 cut(s)	59, 656, 976
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	6 cut(s)	74, 586, 600, 702, 893, 975
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	5 cut(s)	114, 277, 611, 880, 990
HpyCH4III	ACNGT	1 cut(s)	971
HpyCH4IV	ACGT	2 cut(s)	182, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 329
HpyF3I	CTNAG	3 cut(s)	669, 860, 1020
HpySE526I	ACGT	2 cut(s)	182, 880
Hsp92II	CATG	7 cut(s)	9, 428, 432, 575, 679, 727, 734
HspAI	GCGC	1 cut(s)	845
KpnI	GGTACC	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	13, 1032
LmnI	GCTCC	3 cut(s)	142, 328, 1017
Lsp1109I	GCAGC	6 cut(s)	121, 332, 344, 548, 652, 938
LweI	GCATC	3 cut(s)	18, 382, 881
MaeI	CTAG	2 cut(s)	32, 716
MaeII	ACGT	2 cut(s)	182, 880
MalI	GATC	2 cut(s)	15, 1034
MboI	GATC	2 cut(s)	13, 1032
MboII	GAAGA	7 cut(s)	108, 415, 545, 722, 906, 1000, 1027
MfeI	CAATTG	2 cut(s)	143, 945
MhlI	GDGCHC	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	53, 665
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	9 cut(s)	42, 165, 265, 269, 399, 832, 844, 859, 862
Mph1103I	ATGCAT	2 cut(s)	426, 430
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	4 cut(s)	77, 218, 290, 1048
MslI	CAYNNNNRTG	1 cut(s)	429
MunI	CAATTG	2 cut(s)	143, 945
MvnI	CGCG	1 cut(s)	847
MwoI	GCNNNNNNNGC	2 cut(s)	317, 329
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	2 cut(s)	13, 1032
NlaIII	CATG	7 cut(s)	9, 428, 432, 575, 679, 727, 734
NlaIV	GGNNCC	1 cut(s)	495
NsiI	ATGCAT	2 cut(s)	426, 430
NspI	RCATGY	3 cut(s)	9, 428, 432
NspV	TTCGAA	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	976
PkrI	GCNGC	6 cut(s)	136, 322, 334, 538, 667, 928
PleI	GAGTC	2 cut(s)	53, 664
PpsI	GAGTC	2 cut(s)	53, 664
Ppu21I	YACGTR	1 cut(s)	881
PshBI	ATTAAT	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	3 cut(s)	691, 727, 889
PstI	CTGCAG	2 cut(s)	48, 322
PstNI	CAGNNNCTG	1 cut(s)	659
RsaI	GTAC	4 cut(s)	54, 252, 495, 855
RsaNI	GTAC	4 cut(s)	53, 251, 494, 854
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	4 cut(s)	77, 218, 290, 1048
SatI	GCNGC	6 cut(s)	135, 321, 333, 537, 666, 927
Sau3AI	GATC	2 cut(s)	13, 1032
Sau96I	GGNCC	3 cut(s)	691, 727, 889
SchI	GAGTC	2 cut(s)	53, 665
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	3 cut(s)	18, 382, 881
SfcI	CTRYAG	3 cut(s)	44, 186, 318
SfuI	TTCGAA	1 cut(s)	94
SinI	GGWCC	2 cut(s)	727, 889
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
SphI	GCATGC	1 cut(s)	428
SsiI	CCGC	2 cut(s)	140, 194
SspMI	CTAG	2 cut(s)	32, 716
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	1 cut(s)	971
TaiI	ACGT	2 cut(s)	185, 883
TaqI	TCGA	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	976
Tru1I	TTAA	4 cut(s)	77, 218, 290, 1048
Tru9I	TTAA	4 cut(s)	77, 218, 290, 1048
TscAI	CASTG	2 cut(s)	637, 1028
TseI	GCWGC	6 cut(s)	134, 320, 332, 536, 665, 926
TspDTI	ATGAA	6 cut(s)	116, 225, 540, 596, 692, 723
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	2 cut(s)	637, 1028
VpaK11BI	GGWCC	2 cut(s)	727, 889
VspI	ATTAAT	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	819
XapI	RAATTY	4 cut(s)	167, 175, 472, 755
XceI	RCATGY	3 cut(s)	9, 428, 432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	2 cut(s)	32, 716
Zsp2I	ATGCAT	2 cut(s)	426, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.