Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0020387

Physical Location & Seq

Genomic Coordinates Forward (+)

42556236 .. 42579613

Gene Structure 23378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG169400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAATGACTTTGTTGCAGGTCTTCGAATGACGTTGGATTCCTTTTCTGTCAGATCACTGTCACAGTTGATAATTTTTTTCATGTGCCACCCATGTTGGGATATTCGAAGAGTGGCTTATAATGCTACCAAAAAGATAGTTTTAGCTGCCCCACATTTAGCTGAACATCTTTTGATTGAATTCACGACTTTCATGTCTGTAGTTGAAGAGAAAAATCGTATTTCAAAGTCAAGTGATACAGATAGTTCATTGGACTCCCAAGTACCGATCCTTCCCTTGATAGAGGTTTCAGTAAAGGCTTTACTTGTTATATCATCAGCAGTTCTACCTGCAGCTCCGAGTGCATCAATGCGGGTTTTATTATGCGGACATCGTCCATACTTAGTTGGAACTGCAAAAAGAGATGCAGTTTGGAGGAGGCTACATAAGTGTTTGCATAAATGTGGTTATGACATAAACAGCAATATTTTGGCTGACATGGAGAAATTGTGCCAGGAACCTAGGAGGAATTGGTTATTTAGCCTATACTTTCTGAAGCTTGACTTTCTTTGTGCCCCAGTCACCACTGAGTCAGCCTCCATGATTGATTTTGCTACAGCCATCAAGGTCTATGTATTCAGGTCTGATCCTACAGAAAAGATGGTGTATAGAGGGTCTGAAACCAAATGCAAGATGGCTTGGTCGTCACTTTTGGGACAAGTATCATGTGGGATCTCATTGCCTCTTCAGCGTCTCTATTTGTTGTTCATCAAAGATGTACATATCCTCTCCTATGTGTCTTCTTCGGACGAGGTAAAAAACAGTTTGGTGGAAAAGTTAGGAAACTCTTTTTGGGCATTCGTAGAAGATGATTCGTTGGAAGATGAAGTAGAGGATTTGTTGGTATGTGAAGAAAAGGCTTTGTTAATACATGAAGAAAAGGCTGTGTTGGACGAGCTAGCCAAGGCAAATTTGGAAGAGGAAGAAAAGGCTTCTGATATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

328

Amino Acids

37.05

Weight (kDa)

5.4

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020387)

Species	Orthologous Gene IDs
malus_domestica	MD04G1234000.v1.1 MD08G1086100.v1.1
rosa_multiflora	Rmu_sc0000570.1_g000012
rosa_samantha	Rh2BG574200 Rh4AG169400
rosa_wichuraiana	Rw1G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AasI	GACNNNNNNGTC	1 cut(s)	193
Acc36I	ACCTGC	2 cut(s)	8, 337
AciI	CCGC	2 cut(s)	352, 366
AclWI	GGATC	3 cut(s)	262, 620, 719
AcsI	RAATTY	2 cut(s)	179, 949
AcuI	CTGAAG	2 cut(s)	554, 710
AfaI	GTAC	2 cut(s)	264, 759
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	4 cut(s)	179, 206, 225, 983
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	814, 846
AluBI	AGCT	5 cut(s)	146, 161, 335, 538, 937
AluI	AGCT	5 cut(s)	146, 161, 335, 538, 937
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	3 cut(s)	262, 620, 719
ApeKI	GCWGC	2 cut(s)	146, 332
ApoI	RAATTY	2 cut(s)	179, 949
AspA2I	CCTAGG	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	553
AsuII	TTCGAA	2 cut(s)	25, 106
AsuNHI	GCTAGC	1 cut(s)	937
AvrII	CCTAGG	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	556
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbsI	GAAGAC	2 cut(s)	14, 771
BbvI	GCAGC	2 cut(s)	133, 344
BccI	CCATC	3 cut(s)	608, 634, 667
BciT130I	CCWGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	2 cut(s)	501, 938
BfmI	CTRYAG	4 cut(s)	198, 330, 594, 630
BfuAI	ACCTGC	2 cut(s)	8, 337
BisI	GCNGC	2 cut(s)	147, 333
BlnI	CCTAGG	1 cut(s)	500
BlsI	GCNGC	2 cut(s)	148, 334
Bme1390I	CCNGG	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	494
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	353, 394
BmtI	GCTAGC	1 cut(s)	941
BmuI	ACTGGG	1 cut(s)	551
BpiI	GAAGAC	2 cut(s)	14, 771
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
Bpu14I	TTCGAA	2 cut(s)	25, 106
BsaJI	CCNNGG	2 cut(s)	500, 942
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	716
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	500, 942
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	133, 344
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	737
BsmBI	CGTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	1 cut(s)	836
Bsp119I	TTCGAA	2 cut(s)	25, 106
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	757
Bsp143I	GATC	4 cut(s)	53, 267, 625, 711
BspACI	CCGC	2 cut(s)	352, 366
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	498
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	2 cut(s)	8, 337
BspOI	GCTAGC	1 cut(s)	941
BspPI	GGATC	3 cut(s)	262, 620, 719
BspT104I	TTCGAA	2 cut(s)	25, 106
BsrDI	GCAATG	1 cut(s)	716
BsrGI	TGTACA	1 cut(s)	757
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	500, 942
BssMI	GATC	4 cut(s)	53, 267, 625, 711
BssT1I	CCWWGG	2 cut(s)	500, 942
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	60, 66, 803
Bst6I	CTCTTC	4 cut(s)	103, 201, 729, 951
BstAUI	TGTACA	1 cut(s)	757
BstBI	TTCGAA	2 cut(s)	25, 106
BstC8I	GCNNGC	1 cut(s)	939
BstDEI	CTNAG	2 cut(s)	382, 567
BstKTI	GATC	4 cut(s)	56, 270, 628, 714
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	4 cut(s)	53, 267, 625, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 341, 727
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	4 cut(s)	198, 330, 594, 630
BstSLI	GKGCMC	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	133, 344
BstV2I	GAAGAC	2 cut(s)	14, 771
BstX2I	RGATCY	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	711
BtsIMutI	CAGTG	2 cut(s)	56, 564
BveI	ACCTGC	2 cut(s)	8, 337
Cac8I	GCNNGC	1 cut(s)	939
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	2 cut(s)	263, 758
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviAII	CATG	7 cut(s)	82, 93, 193, 478, 580, 705, 911
CviQI	GTAC	2 cut(s)	263, 758
DdeI	CTNAG	2 cut(s)	382, 567
DpnI	GATC	4 cut(s)	55, 269, 627, 713
DpnII	GATC	4 cut(s)	53, 267, 625, 711
DrdI	GACNNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	4 cut(s)	103, 201, 729, 951
EarI	CTCTTC	4 cut(s)	103, 201, 729, 951
Eco130I	CCWWGG	2 cut(s)	500, 942
Eco57I	CTGAAG	2 cut(s)	554, 710
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	500, 942
ErhI	CCWWGG	2 cut(s)	500, 942
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	7 cut(s)	85, 96, 196, 481, 583, 708, 914
FalI	AAGNNNNNCTT	4 cut(s)	100, 132, 527, 559
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	7 cut(s)	81, 92, 192, 477, 579, 704, 910
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	147, 333
Fsp4HI	GCNGC	2 cut(s)	147, 333
FspBI	CTAG	2 cut(s)	501, 938
GluI	GCNGC	2 cut(s)	147, 333
HgaI	GACGC	1 cut(s)	719
Hin1II	CATG	7 cut(s)	85, 96, 196, 481, 583, 708, 914
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	4 cut(s)	38, 254, 569, 851
HphI	GGTGA	1 cut(s)	553
Hpy188I	TCNGA	7 cut(s)	53, 339, 534, 625, 658, 787, 976
Hpy188III	TCNNGA	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	3 cut(s)	60, 66, 803
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	7 cut(s)	17, 332, 344, 395, 407, 436, 669
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 341, 727
HpyF3I	CTNAG	2 cut(s)	382, 567
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	7 cut(s)	85, 96, 196, 481, 583, 708, 914
Kzo9I	GATC	4 cut(s)	53, 267, 625, 711
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	6 cut(s)	3, 342, 479, 506, 570, 604
Lsp1109I	GCAGC	2 cut(s)	133, 344
LweI	GCATC	2 cut(s)	353, 394
MaeI	CTAG	2 cut(s)	501, 938
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	60, 559, 684
MalI	GATC	4 cut(s)	55, 269, 627, 713
MboI	GATC	4 cut(s)	53, 267, 625, 711
MflI	RGATCY	1 cut(s)	711
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	5 cut(s)	72, 179, 485, 508, 949
MlyI	GAGTC	2 cut(s)	248, 578
MmeI	TCCRAC	4 cut(s)	15, 367, 837, 909
MseI	TTAA	1 cut(s)	905
MslI	CAYNNNNRTG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	836
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	122, 341, 727
NdeII	GATC	4 cut(s)	53, 267, 625, 711
NheI	GCTAGC	1 cut(s)	937
NlaIII	CATG	7 cut(s)	85, 96, 196, 481, 583, 708, 914
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	3 cut(s)	60, 559, 684
NspV	TTCGAA	2 cut(s)	25, 106
PctI	GAATGC	1 cut(s)	836
PfeI	GAWTC	2 cut(s)	38, 851
PflFI	GACNNNGTC	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	148, 334
PleI	GAGTC	2 cut(s)	248, 577
PpsI	GAGTC	2 cut(s)	248, 577
PsiI	TTATAA	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	498
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	711
PsyI	GACNNNGTC	1 cut(s)	372
RsaI	GTAC	2 cut(s)	264, 759
RsaNI	GTAC	2 cut(s)	263, 758
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	905
SatI	GCNGC	2 cut(s)	147, 333
Sau3AI	GATC	4 cut(s)	53, 267, 625, 711
SchI	GAGTC	2 cut(s)	248, 578
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	353, 394
SfcI	CTRYAG	4 cut(s)	198, 330, 594, 630
SfuI	TTCGAA	2 cut(s)	25, 106
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	5 cut(s)	72, 179, 485, 508, 949
SsiI	CCGC	2 cut(s)	352, 366
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	501, 938
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	2 cut(s)	500, 942
TaaI	ACNGT	3 cut(s)	60, 66, 803
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	25, 106
TasI	AATT	5 cut(s)	72, 179, 485, 508, 949
TatI	WGTACW	1 cut(s)	757
TfiI	GAWTC	2 cut(s)	38, 851
Tru1I	TTAA	1 cut(s)	905
Tru9I	TTAA	1 cut(s)	905
TscAI	CASTG	2 cut(s)	63, 571
TseFI	GTSAC	3 cut(s)	60, 559, 684
TseI	GCWGC	2 cut(s)	146, 332
Tsp45I	GTSAC	3 cut(s)	60, 559, 684
TspDTI	ATGAA	7 cut(s)	17, 70, 181, 237, 736, 879, 927
TspRI	CASTG	2 cut(s)	63, 571
Tth111I	GACNNNGTC	1 cut(s)	372
XapI	RAATTY	2 cut(s)	179, 949
XcmI	CCANNNNNNNNNTGG	2 cut(s)	670, 949
XmaJI	CCTAGG	1 cut(s)	500
XspI	CTAG	2 cut(s)	501, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.