Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000570.1

Orthogroup ID

OG0020387

Physical Location & Seq

Genomic Coordinates Reverse (-)

78690 .. 79551

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000570.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgggttttggacctttgtgcttgtctcatctaaaagaggcacaagaatttgaattggtacaatttgaattggatcttcgcacagcacgagcagaactgggtgaaggcaggccaataaaattaattgtcagtctcacagctatttgtttgatcagtatcttgggtgccatagtgtttggtttgtacaggttgcgagctagccaaagaggaaaaatcagagtaaaaacagggaattgctacaaacaatttcagtctcgcaaacaaactcgggcaaggaggatttggccctgttataaggataagctacttgaagggaaggaaatagcagtgaaaagactatctagtagcttggctgaggccaaggcaaagaagaggtcaagaatcagacgttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

131

Amino Acids

14.98

Weight (kDa)

10.44

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020387)

Species	Orthologous Gene IDs
malus_domestica	MD04G1234000.v1.1 MD08G1086100.v1.1
rosa_multiflora	Rmu_sc0000570.1_g000012
rosa_samantha	Rh2BG574200 Rh4AG169400
rosa_wichuraiana	Rw1G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	2 cut(s)	60, 185
AgsI	TTSAA	3 cut(s)	53, 68, 311
AluBI	AGCT	4 cut(s)	140, 197, 304, 348
AluI	AGCT	4 cut(s)	140, 197, 304, 348
Alw26I	GTCTC	3 cut(s)	30, 137, 258
AlwI	GGATC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	3 cut(s)	110, 284, 357
ApoI	RAATTY	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AseI	ATTAAT	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	11, 285
AsuHPI	GGTGA	1 cut(s)	113
AsuNHI	GCTAGC	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	354
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	3 cut(s)	30, 137, 258
BfaI	CTAG	2 cut(s)	198, 342
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	11, 285
BmiI	GGNNCC	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	107
BmtI	GCTAGC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	112, 286, 359
BshNI	GGYRCC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	267
BsmAI	GTCTC	3 cut(s)	30, 137, 258
BsnI	GGCC	3 cut(s)	112, 286, 359
BsoBI	CYCGRG	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	73, 150
BspANI	GGCC	3 cut(s)	112, 286, 359
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	2 cut(s)	73, 150
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	110, 195, 199
BstDEI	CTNAG	1 cut(s)	354
BstKTI	GATC	2 cut(s)	76, 153
BstMAI	GTCTC	3 cut(s)	30, 137, 258
BstMBI	GATC	2 cut(s)	73, 150
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	3 cut(s)	112, 286, 359
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	3 cut(s)	110, 195, 199
Cfr13I	GGNCC	2 cut(s)	11, 285
Csp6I	GTAC	2 cut(s)	59, 184
CviJI	RGCY	9 cut(s)	112, 140, 197, 201, 286, 304, 348, 353, 359
CviKI_1	RGCY	9 cut(s)	112, 140, 197, 201, 286, 304, 348, 353, 359
CviQI	GTAC	2 cut(s)	59, 184
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	75, 152
DpnII	GATC	2 cut(s)	73, 150
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaiI	YATR	2 cut(s)	170, 294
FbaI	TGATCA	1 cut(s)	150
FspBI	CTAG	2 cut(s)	198, 342
HaeIII	GGCC	3 cut(s)	112, 286, 359
HinfI	GANTC	1 cut(s)	381
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	218, 386
Hpy188III	TCNNGA	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	98, 305, 310
HpyCH4IV	ACGT	1 cut(s)	388
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	73, 150
LpnPI	CCDG	5 cut(s)	83, 94, 172, 213, 301
MaeI	CTAG	2 cut(s)	198, 342
MaeII	ACGT	1 cut(s)	388
MalI	GATC	2 cut(s)	75, 152
MboI	GATC	2 cut(s)	73, 150
MboII	GAAGA	2 cut(s)	68, 382
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	8 cut(s)	47, 53, 62, 68, 119, 123, 232, 245
MnlI	CCTC	5 cut(s)	31, 200, 270, 349, 366
MseI	TTAA	1 cut(s)	122
NdeII	GATC	2 cut(s)	73, 150
NheI	GCTAGC	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	122
PsiI	TTATAA	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	11, 285
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	2 cut(s)	60, 185
RsaNI	GTAC	2 cut(s)	59, 184
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	73, 150
Sau96I	GGNCC	2 cut(s)	11, 285
SetI	ASST	8 cut(s)	16, 142, 191, 199, 306, 350, 377, 391
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	8 cut(s)	47, 53, 62, 68, 119, 123, 232, 245
SspMI	CTAG	2 cut(s)	198, 342
StyI	CCWWGG	1 cut(s)	360
TaiI	ACGT	1 cut(s)	391
TasI	AATT	8 cut(s)	47, 53, 62, 68, 119, 123, 232, 245
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	333
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	122
XapI	RAATTY	1 cut(s)	47
XspI	CTAG	2 cut(s)	198, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.