Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0020387

Physical Location & Seq

Genomic Coordinates Forward (+)

7150497 .. 7152485

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1086100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTGTTATAGTGAAACAGATAATTCATTGGACACTCAAGTACCATTCCTCCCTTTGGTTGAGGTTTCAGTGAAGGCTTTACTTGTCATATCATTAGTAGCTCTACCTGCAGCTCCAAGTGCAGCAACACGAGTTTTGTTCTGTGCTCATCATCCATACTTGGTTGGAACTGCAAAGAGAGACGCAGTTTGGAAGAGGCAACGAAGATGTATGCATGCATGTGGTTTGGATCTCTTTCCAGATAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

84

Amino Acids

9.2

Weight (kDa)

8.45

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020387)

Species	Orthologous Gene IDs
malus_domestica	MD04G1234000.v1.1 MD08G1086100.v1.1
rosa_multiflora	Rmu_sc0000570.1_g000012
rosa_samantha	Rh2BG574200 Rh4AG169400
rosa_wichuraiana	Rw1G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	101, 113
AluI	AGCT	2 cut(s)	101, 113
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	110, 122
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	122, 134
BcoDI	GTCTC	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	2 cut(s)	111, 123
BlsI	GCNGC	2 cut(s)	112, 124
BpuEI	CTTGAG	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	122, 134
BsgI	GTGCAG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	237
BssMI	GATC	1 cut(s)	229
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 119
BstNSI	RCATGY	2 cut(s)	218, 222
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	122, 134
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	216
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	2 cut(s)	215, 219
CviJI	RGCY	3 cut(s)	77, 101, 113
CviKI_1	RGCY	3 cut(s)	77, 101, 113
CviQI	GTAC	1 cut(s)	41
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EcoT22I	ATGCAT	2 cut(s)	216, 220
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	218, 222
FaiI	YATR	6 cut(s)	9, 89, 157, 212, 216, 220
FatI	CATG	2 cut(s)	214, 218
Fnu4HI	GCNGC	2 cut(s)	111, 123
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	111, 123
GluI	GCNGC	2 cut(s)	111, 123
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	218, 222
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	110, 122, 173, 214, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 119
Hsp92II	CATG	2 cut(s)	218, 222
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	1 cut(s)	120
Lsp1109I	GCAGC	2 cut(s)	122, 134
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	205, 216
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	55, 59, 189
Mph1103I	ATGCAT	2 cut(s)	216, 220
MslI	CAYNNNNRTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	107, 119
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	218, 222
NsiI	ATGCAT	2 cut(s)	216, 220
NspI	RCATGY	2 cut(s)	218, 222
PaeI	GCATGC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	112, 124
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	219
SatI	GCNGC	2 cut(s)	111, 123
Sau3AI	GATC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	4 cut(s)	66, 103, 109, 115
SfcI	CTRYAG	1 cut(s)	108
SgeI	CNNG	9 cut(s)	50, 95, 119, 129, 141, 143, 172, 227, 231
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	1 cut(s)	22
TasI	AATT	1 cut(s)	22
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	2 cut(s)	110, 122
TspDTI	ATGAA	1 cut(s)	15
TspRI	CASTG	1 cut(s)	75
XceI	RCATGY	2 cut(s)	218, 222
Zsp2I	ATGCAT	2 cut(s)	216, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.