MD05G1016500.v1.1

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
2891390 .. 2905690
14301 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1016500.v1.1.491

Sequence Viewer

Length: 1704 bp
ATGGTGCTGGTCACGGCTGTACGGGATTACTTAAGCCGGATGTTGCAGGACATCTCAGGCATGAAGGTTCTCATCCTCGATTCCCACACGGTTAGTATAGTGAGCGTGGCGTATTCGCAATCCGAGCTTCTGCAGAAAGAAGTGTTTTTGGTGGAATTGGTAGACTCCATTTCCAAGTCCAGAGAATCCATGTCGCATCTCAAAGCCGTTTACTTTCTCGCACCCACTTCAGAGAACATACAGTTTTTGCGCCGGCACTTGGTGTCTCCTCGATTCGGGGAGTATCACCTCTTTTTCTCCAACATATTGAAGGATACCCAGATTCATATTTTAGCTGATTCAGATGAGCATGAAGTTGTGCAGCAGCTTCAGGAGTTCTATGCAGACTTTGTTGCAACTGATCCTTACCATTTTACTTTGAATGTGCCATCAAATCACATGTATATGCTCCCAGCAGTTGTGGATCATTCAAATTTACAGTGCTTCTGTGATCGAGTAGTTGATGGAATTGCAGCTGTTTTTTTGGCATTAAAACGAAGACCAGTTATTCGTTATCAGAGAACATCTGATATTGCTAAAAGGATTGCGCAGGAAACAGCAAAGCTGATGTACCAGCAGGAAAGTGGACTTTTTGATTTCAGACGAACAGAAATTTCTCCGTTGTTGCTGGTAATTGATAGGAGGGATGATCCTGTGACCCCGTTGCTGAATCAGTGGACCTATCAGGCCATGGTTCACGAATTGATTGGTATTCAAGACAACAAAGTCGACTTAAGAAACATTGGAAAATTTCCAAAGGATCAAGAGGAGGTTGTGCTGTCATCAGAGCAAGATGCTTTTTTCAAAAAGAACATGTATGAGAACTTTGGTGATATTGGGATGAACATCAAGCAGTTGGTTGATGAATTTCAGCAAATTTCAAAATGTAACCAGAACATTCAGACGATAGAGGACATGGCCAAGTTTGTTGACAATTACCCTGAGTACAGAAAGATGCATGGAAATGTTTCAAAGCATGTGGCACTGGTAACAGAAATGAGCAAGCTAGTTGAAGAGCGAAAACTTATGGTAGTGTCACAGACAGAGCAGGAGTTGGCTTGCAACGGTGGGCAGGTGGCAGCTTTTGAGGCAGTGACAAATCTATTAAACAATGAAAGCGTATCTGATATTGACCGCCTACGACTTGTCATGCTGTATGCTTTACGCTATGAGAAGGAGAGTCCTGTGCAACTAATGCAGTTATTTAACAAACTGTCATCCAAGTCTCCCAAGTACAAGCCTGGGCTTGTCCAGTTTCTCTTGAAGCAAGCGGGTGTGGATAAGCGAACCGGGGATCTTTATGGAAATCGAGATTTCTTAAACATCGCGCGTAACATGGCTCGTGGGCTGAAGGGGGTTGAGAATGTGTACACACAACACCAGCCTCTTCTCTTCCAAACTATGGAAAGCATCACCAAGGGACGGCTGAGAGATGTGGATTACCCATTTGTGGGAAATCATTTCCAGCAGGGCAGGCCTCAAGAAGTGGTCATTTTCATTGTTGGGGGGACAACGTACGAGGAGTCTCGTTGTGTAGCTTTACAAAATGCTATGAATACTGGAATTCGTTTTATACTTGGTGGTTCTGTGATTCTCAATTCTAAAAGGTTCTTGAAGGACTTGGAAGAAGCTCAGAGAATAGCTCGTACTAGCAATGCCATCTGA

Protein Analysis

568

Amino Acids

65.05

Weight (kDa)

6.42

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 22 - 553 2.6e-124 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1102
AasI GACNNNNNNGTC 1 cut(s) 764
Acc16I TGCGCA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 1102
AccB7I CCANNNNNTGG 1 cut(s) 1441
AccI GTMKAC 2 cut(s) 162, 768
AccII CGCG 2 cut(s) 1367, 1369
AciI CCGC 2 cut(s) 1174, 1310
AclWI GGATC 5 cut(s) 395, 471, 683, 807, 1341
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 6 cut(s) 472, 651, 788, 905, 915, 1602
AcuI CTGAAG 3 cut(s) 213, 353, 1409
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 7 cut(s) 21, 611, 986, 1274, 1409, 1556, 1687
AfiI CCNNNNNNNGG 6 cut(s) 259, 275, 1441, 1461, 1489, 1490
AflII CTTAAG 2 cut(s) 31, 772
AflIII ACRYGT 2 cut(s) 438, 852
AjnI CCWGG 1 cut(s) 1279
Alw26I GTCTC 3 cut(s) 270, 1269, 1569
AlwI GGATC 5 cut(s) 395, 471, 683, 807, 1341
AoxI GGCC 3 cut(s) 726, 957, 1514
ApeKI GCWGC 4 cut(s) 361, 364, 512, 1118
ApoI RAATTY 6 cut(s) 472, 651, 788, 905, 915, 1602
ArsI GACNNNNNNTTYG 2 cut(s) 531, 563
Asp700I GAANNNNTTC 1 cut(s) 1006
AspLEI GCGC 3 cut(s) 252, 589, 1369
AspS9I GGNCC 1 cut(s) 717
AsuC2I CCSGG 1 cut(s) 1330
AsuHPI GGTGA 3 cut(s) 278, 881, 1444
AvaII GGWCC 1 cut(s) 717
BalI TGGCCA 1 cut(s) 959
BauI CACGAG 1 cut(s) 1380
BbsI GAAGAC 1 cut(s) 544
BbvI GCAGC 4 cut(s) 373, 376, 524, 1130
BccI CCATC 2 cut(s) 436, 497
BceAI ACGGC 3 cut(s) 30, 191, 1478
BciT130I CCWGG 1 cut(s) 1281
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 1330
BcoDI GTCTC 3 cut(s) 270, 1269, 1569
BfaI CTAG 2 cut(s) 1046, 1689
BfmI CTRYAG 1 cut(s) 131
BfrI CTTAAG 2 cut(s) 31, 772
BfuAI ACCTGC 1 cut(s) 1102
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 4 cut(s) 362, 365, 513, 1119
BlsI GCNGC 4 cut(s) 363, 366, 514, 1120
Bme1390I CCNGG 2 cut(s) 1281, 1330
Bme18I GGWCC 1 cut(s) 717
BmgT120I GGNCC 1 cut(s) 717
BmrFI CCNGG 2 cut(s) 1281, 1330
BmsI GCATC 4 cut(s) 205, 823, 984, 1458
BpiI GAAGAC 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 1666, 1698
BpuEI CTTGAG 1 cut(s) 1503
BpuMI CCSGG 1 cut(s) 1330
BsaBI GATNNNNATC 1 cut(s) 884
BsaJI CCNNGG 4 cut(s) 729, 1280, 1329, 1455
Bsc4I CCNNNNNNNGG 6 cut(s) 259, 275, 1441, 1461, 1489, 1490
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 4 cut(s) 542, 1029, 1291, 1603
Bse3DI GCAATG 1 cut(s) 1699
Bse8I GATNNNNATC 1 cut(s) 884
BseBI CCWGG 1 cut(s) 1281
BseDI CCNNGG 4 cut(s) 729, 1280, 1329, 1455
BseGI GGATG 5 cut(s) 45, 72, 691, 885, 1256
BseJI GATNNNNATC 1 cut(s) 884
BseLI CCNNNNNNNGG 6 cut(s) 259, 275, 1441, 1461, 1489, 1490
BseMI GCAATG 1 cut(s) 1699
BseMII CTCAG 4 cut(s) 69, 972, 1457, 1685
BseNI ACTGG 4 cut(s) 542, 1029, 1291, 1603
BseRI GAGGAG 3 cut(s) 258, 821, 1574
BseXI GCAGC 4 cut(s) 373, 376, 524, 1130
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 2 cut(s) 1367, 1369
BshFI GGCC 3 cut(s) 728, 959, 1516
BsiSI CCGG 3 cut(s) 37, 253, 1329
BsiWI CGTACG 1 cut(s) 1554
BslFI GGGAC 2 cut(s) 1473, 1561
BslI CCNNNNNNNGG 6 cut(s) 259, 275, 1441, 1461, 1489, 1490
BsmAI GTCTC 3 cut(s) 270, 1269, 1569
BsmFI GGGAC 2 cut(s) 1473, 1561
BsnI GGCC 3 cut(s) 728, 959, 1516
Bsp1407I TGTACA 1 cut(s) 1407
Bsp143I GATC 6 cut(s) 400, 463, 490, 688, 799, 1333
Bsp19I CCATGG 1 cut(s) 729
BspACI CCGC 2 cut(s) 1174, 1310
BspANI GGCC 3 cut(s) 728, 959, 1516
BspCNI CTCAG 4 cut(s) 68, 973, 1458, 1684
BspFNI CGCG 2 cut(s) 1367, 1369
BspMAI CTGCAG 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 1102
BspPI GGATC 5 cut(s) 395, 471, 683, 807, 1341
BspQI GCTCTTC 1 cut(s) 1047
BspTI CTTAAG 2 cut(s) 31, 772
BsrDI GCAATG 1 cut(s) 1699
BsrFI RCCGGY 1 cut(s) 252
BsrGI TGTACA 1 cut(s) 1407
BsrI ACTGG 4 cut(s) 542, 1029, 1291, 1603
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 4 cut(s) 729, 1280, 1329, 1455
BssMI GATC 6 cut(s) 400, 463, 490, 688, 799, 1333
BssSI CACGAG 1 cut(s) 1380
BssT1I CCWWGG 2 cut(s) 729, 1455
Bst2BI CACGAG 1 cut(s) 1380
Bst2UI CCWGG 1 cut(s) 1281
Bst4CI ACNGT 5 cut(s) 91, 243, 480, 1106, 1254
Bst6I CTCTTC 3 cut(s) 1047, 1431, 1436
BstAFI CTTAAG 2 cut(s) 31, 772
BstAPI GCANNNNNTGC 1 cut(s) 1234
BstAUI TGTACA 1 cut(s) 1407
BstC8I GCNNGC 5 cut(s) 254, 1043, 1099, 1308, 1514
BstDEI CTNAG 4 cut(s) 55, 981, 1466, 1671
BstDSI CCRYGG 1 cut(s) 729
BstF5I GGATG 5 cut(s) 45, 72, 691, 885, 1256
BstFNI CGCG 2 cut(s) 1367, 1369
BstHHI GCGC 3 cut(s) 252, 589, 1369
BstKTI GATC 6 cut(s) 403, 466, 493, 691, 802, 1336
BstMAI GTCTC 3 cut(s) 270, 1269, 1569
BstMBI GATC 6 cut(s) 400, 463, 490, 688, 799, 1333
BstMWI GCNNNNNNNGC 4 cut(s) 124, 1127, 1234, 1513
BstNI CCWGG 1 cut(s) 1281
BstNSI RCATGY 3 cut(s) 442, 856, 1019
BstSCI CCNGG 2 cut(s) 1279, 1328
BstSFI CTRYAG 1 cut(s) 131
BstUI CGCG 2 cut(s) 1367, 1369
BstV1I GCAGC 4 cut(s) 373, 376, 524, 1130
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 1333
BstYI RGATCY 1 cut(s) 1333
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 3 cut(s) 728, 959, 1516
BtgI CCRYGG 1 cut(s) 729
BtgZI GCGATG 1 cut(s) 1348
BtsCI GGATG 5 cut(s) 45, 72, 691, 885, 1256
BtsI GCAGTG 1 cut(s) 1137
BtsIMutI CAGTG 4 cut(s) 485, 719, 1022, 1137
BveI ACCTGC 1 cut(s) 1102
Cac8I GCNNGC 5 cut(s) 254, 1043, 1099, 1308, 1514
CfoI GCGC 3 cut(s) 252, 589, 1369
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 717
Csp6I GTAC 7 cut(s) 20, 610, 985, 1273, 1408, 1555, 1686
CspCI CAANNNNNGTGG 2 cut(s) 999, 1034
CviQI GTAC 7 cut(s) 20, 610, 985, 1273, 1408, 1555, 1686
DdeI CTNAG 4 cut(s) 55, 981, 1466, 1671
DpnI GATC 6 cut(s) 402, 465, 492, 690, 801, 1335
DpnII GATC 6 cut(s) 400, 463, 490, 688, 799, 1333
DraIII CACNNNGTG 1 cut(s) 262
DrdI GACNNNNNNGTC 1 cut(s) 764
DseDI GACNNNNNNGTC 1 cut(s) 764
EaeI YGGCCR 1 cut(s) 957
Eam1104I CTCTTC 3 cut(s) 1047, 1431, 1436
EarI CTCTTC 3 cut(s) 1047, 1431, 1436
Eco130I CCWWGG 2 cut(s) 729, 1455
Eco147I AGGCCT 1 cut(s) 1516
Eco47I GGWCC 1 cut(s) 717
Eco57I CTGAAG 3 cut(s) 213, 353, 1409
EcoRI GAATTC 1 cut(s) 1602
EcoRII CCWGG 1 cut(s) 1279
EcoT14I CCWWGG 2 cut(s) 729, 1455
EcoT22I ATGCAT 1 cut(s) 999
ErhI CCWWGG 2 cut(s) 729, 1455
FaqI GGGAC 2 cut(s) 1473, 1561
FauI CCCGC 1 cut(s) 1303
FblI GTMKAC 2 cut(s) 162, 768
Fnu4HI GCNGC 4 cut(s) 362, 365, 513, 1119
FokI GGATG 5 cut(s) 52, 59, 698, 892, 1243
Fsp4HI GCNGC 4 cut(s) 362, 365, 513, 1119
FspBI CTAG 2 cut(s) 1046, 1689
FspI TGCGCA 1 cut(s) 588
GlaI GCGC 3 cut(s) 251, 588, 1368
GluI GCNGC 4 cut(s) 362, 365, 513, 1119
GsaI CCCAGC 1 cut(s) 455
HaeIII GGCC 3 cut(s) 728, 959, 1516
HapII CCGG 3 cut(s) 37, 253, 1329
HhaI GCGC 3 cut(s) 252, 589, 1369
Hin6I GCGC 3 cut(s) 250, 587, 1367
HinP1I GCGC 3 cut(s) 250, 587, 1367
HincII GTYRAC 2 cut(s) 769, 970
HindII GTYRAC 2 cut(s) 769, 970
HpaII CCGG 3 cut(s) 37, 253, 1329
HphI GGTGA 3 cut(s) 278, 881, 1444
Hpy166II GTNNAC 9 cut(s) 163, 211, 626, 717, 736, 769, 970, 1408, 1410
Hpy188III TCNNGA 9 cut(s) 180, 371, 737, 755, 803, 1300, 1349, 1520, 1651
Hpy8I GTNNAC 9 cut(s) 163, 211, 626, 717, 736, 769, 970, 1408, 1410
HpyAV CCTTC 5 cut(s) 58, 304, 1207, 1384, 1648
HpyCH4III ACNGT 5 cut(s) 91, 243, 480, 1106, 1254
HpyCH4IV ACGT 1 cut(s) 1553
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 1127, 1234, 1513
HpyF3I CTNAG 4 cut(s) 55, 981, 1466, 1671
HpySE526I ACGT 1 cut(s) 1553
HspAI GCGC 3 cut(s) 250, 587, 1367
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
Kzo9I GATC 6 cut(s) 400, 463, 490, 688, 799, 1333
LguI GCTCTTC 1 cut(s) 1047
LmnI GCTCC 1 cut(s) 453
Lsp1109I GCAGC 4 cut(s) 373, 376, 524, 1130
LweI GCATC 4 cut(s) 205, 823, 984, 1458
MaeI CTAG 2 cut(s) 1046, 1689
MaeII ACGT 1 cut(s) 1553
MaeIII GTNAC 7 cut(s) 10, 694, 926, 1027, 1074, 1132, 1370
MalI GATC 6 cut(s) 402, 465, 492, 690, 801, 1335
MboI GATC 6 cut(s) 400, 463, 490, 688, 799, 1333
MboII GAAGA 5 cut(s) 549, 1064, 1418, 1423, 1676
MflI RGATCY 1 cut(s) 1333
MlsI TGGCCA 1 cut(s) 959
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 3 cut(s) 158, 1228, 1571
MmeI TCCRAC 1 cut(s) 324
Mox20I TGGCCA 1 cut(s) 959
Mph1103I ATGCAT 1 cut(s) 999
MroNI GCCGGC 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 1006
MscI TGGCCA 1 cut(s) 959
MseI TTAA 6 cut(s) 32, 530, 773, 1145, 1245, 1358
MslI CAYNNNNRTG 2 cut(s) 443, 1002
Msp20I TGGCCA 1 cut(s) 959
MspA1I CMGCKG 1 cut(s) 515
MspCI CTTAAG 2 cut(s) 31, 772
MspI CCGG 3 cut(s) 37, 253, 1329
MspR9I CCNGG 2 cut(s) 1281, 1330
MvaI CCWGG 1 cut(s) 1281
MvnI CGCG 2 cut(s) 1367, 1369
MwoI GCNNNNNNNGC 4 cut(s) 124, 1127, 1234, 1513
NaeI GCCGGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 1330
NcoI CCATGG 1 cut(s) 729
NdeII GATC 6 cut(s) 400, 463, 490, 688, 799, 1333
NgoMIV GCCGGC 1 cut(s) 252
NmuCI GTSAC 4 cut(s) 10, 694, 1074, 1132
NsbI TGCGCA 1 cut(s) 588
NsiI ATGCAT 1 cut(s) 999
NspI RCATGY 3 cut(s) 442, 856, 1019
PaqCI CACCTGC 1 cut(s) 1102
PceI AGGCCT 1 cut(s) 1516
PciI ACATGT 2 cut(s) 438, 852
PciSI GCTCTTC 1 cut(s) 1047
PdiI GCCGGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 1006
PfeI GAWTC 7 cut(s) 80, 185, 273, 322, 338, 709, 1630
Pfl23II CGTACG 1 cut(s) 1554
PflMI CCANNNNNTGG 1 cut(s) 1441
PkrI GCNGC 4 cut(s) 363, 366, 514, 1120
PleI GAGTC 3 cut(s) 158, 1227, 1570
PpsI GAGTC 3 cut(s) 158, 1227, 1570
PscI ACATGT 2 cut(s) 438, 852
Psp6I CCWGG 1 cut(s) 1279
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 1 cut(s) 1279
PspLI CGTACG 1 cut(s) 1554
PspPI GGNCC 1 cut(s) 717
PstI CTGCAG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 1333
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 7 cut(s) 21, 611, 986, 1274, 1409, 1556, 1687
RsaNI GTAC 7 cut(s) 20, 610, 985, 1273, 1408, 1555, 1686
RseI CAYNNNNRTG 2 cut(s) 443, 1002
SalI GTCGAC 1 cut(s) 767
SapI GCTCTTC 1 cut(s) 1047
SaqAI TTAA 6 cut(s) 32, 530, 773, 1145, 1245, 1358
SatI GCNGC 4 cut(s) 362, 365, 513, 1119
Sau3AI GATC 6 cut(s) 400, 463, 490, 688, 799, 1333
Sau96I GGNCC 1 cut(s) 717
SchI GAGTC 3 cut(s) 158, 1228, 1571
ScrFI CCNGG 2 cut(s) 1281, 1330
SfaNI GCATC 4 cut(s) 205, 823, 984, 1458
SfcI CTRYAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 717
SmiMI CAYNNNNRTG 2 cut(s) 443, 1002
SmlI CTYRAG 3 cut(s) 31, 772, 1518
SmoI CTYRAG 3 cut(s) 31, 772, 1518
SseBI AGGCCT 1 cut(s) 1516
SsiI CCGC 2 cut(s) 1174, 1310
SspMI CTAG 2 cut(s) 1046, 1689
StuI AGGCCT 1 cut(s) 1516
StyD4I CCNGG 2 cut(s) 1279, 1328
StyI CCWWGG 2 cut(s) 729, 1455
TaaI ACNGT 5 cut(s) 91, 243, 480, 1106, 1254
TaiI ACGT 1 cut(s) 1556
TaqI TCGA 5 cut(s) 78, 271, 493, 768, 1348
TatI WGTACW 3 cut(s) 984, 1272, 1407
TfiI GAWTC 7 cut(s) 80, 185, 273, 322, 338, 709, 1630
Tru1I TTAA 6 cut(s) 32, 530, 773, 1145, 1245, 1358
Tru9I TTAA 6 cut(s) 32, 530, 773, 1145, 1245, 1358
TscAI CASTG 4 cut(s) 485, 719, 1029, 1137
TseFI GTSAC 4 cut(s) 10, 694, 1074, 1132
TseI GCWGC 4 cut(s) 361, 364, 512, 1118
Tsp45I GTSAC 4 cut(s) 10, 694, 1074, 1132
TspDTI ATGAA 8 cut(s) 77, 314, 366, 896, 918, 1167, 1525, 1607
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 4 cut(s) 485, 719, 1029, 1137
Van91I CCANNNNNTGG 1 cut(s) 1441
Vha464I CTTAAG 2 cut(s) 31, 772
VpaK11BI GGWCC 1 cut(s) 717
XapI RAATTY 6 cut(s) 472, 651, 788, 905, 915, 1602
XceI RCATGY 3 cut(s) 442, 856, 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 2 cut(s) 162, 768
XmnI GAANNNNTTC 1 cut(s) 1006
XspI CTAG 2 cut(s) 1046, 1689
Zsp2I ATGCAT 1 cut(s) 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.