Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004658

Physical Location & Seq

Genomic Coordinates Forward (+)

2094652 .. 2097669

Gene Structure 3018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1016100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCTTGTCCAGTTTCTCTTGAAGCAAGCGGGTGTGGATAAGCGAACCGGGGATCTTTTTGGAAATCGAGATTTCTTAAACATTGCACGTAACATGGCTCGTGGGCTGAAGGGGGTTGAGAATGTGTACACGCAACACCAGCCTCTTCTCTTCCAAACTATGGAAAGCATCAGTAAGGGACGGCTGAGAGATGTGGATTATCCATTTGTGGGAAATCATTTCCAGCAGGGCAGGCCTCAAGATGTGGTCATTTTCATTGTTGGGGGGACAACTTACGAGGAGTCTCGTTGTGTAGCTTTACAAAATGCTATGAATACTGGAATTCGCTTTGTACTTGGTGGTTCTGTGATTCTCAATTCTAAAAGGTTCTTGAAGGACTTGGAAGAAGCTCAGAGACTAGCTCGTACTAGCAACGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009705 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0032588 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04144 map04138 map04144

Pfam Domains

Protein Families

Sec1

Protein Analysis

141

Amino Acids

15.78

Weight (kDa)

9.72

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	39 - 126	3.9e-15	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77140
fragaria_vesca	FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590
malus_domestica	MD05G1016500.v1.1 MD10G1016000.v1.1 MD10G1016100.v1.1
prunus_persica	Prupe.8G019800_v2.0.a1 Prupe.8G019800_v2.0.a1
pyrus_communis	pycom05g00910 pycom10g01040 pycom10g01050
rosa_chinensis	RchiOBHm_Chr6g0277061
rosa_laevigata	RLG00000013340
rosa_multiflora	Rmu_sc0000206.1_g000006
rosa_roxburghii	Rroxscaffold_7G00191710
rosa_rugosa	Rorug06G0106100 Rorug06G0106200 Rorug06G0106300 Rorug06G0106300 Rorug06G0106300 Rorug06G0106300
rosa_samantha	Rh6AG216000 Rh6BG220600 Rh6CG223400 Rh6DG213000
rosa_wichuraiana	Rw6G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	3 cut(s)	128, 333, 406
AfiI	CCNNNNNNNGG	2 cut(s)	160, 209
AgsI	TTSAA	2 cut(s)	22, 373
AluBI	AGCT	3 cut(s)	296, 389, 401
AluI	AGCT	3 cut(s)	296, 389, 401
Alw26I	GTCTC	2 cut(s)	288, 388
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	321
AsuC2I	CCSGG	1 cut(s)	49
BauI	CACGAG	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	288, 388
BfaI	CTAG	2 cut(s)	398, 408
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 209
Bse1I	ACTGG	2 cut(s)	10, 322
Bse3DI	GCAATG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	160, 209
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	176, 404
BseNI	ACTGG	2 cut(s)	10, 322
BseRI	GAGGAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	192, 280
BslI	CCNNNNNNNGG	2 cut(s)	160, 209
BsmAI	GTCTC	2 cut(s)	288, 388
BsmFI	GGGAC	2 cut(s)	192, 280
BsnI	GGCC	1 cut(s)	235
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	177, 403
BspPI	GGATC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	81
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	10, 322
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
Bst6I	CTCTTC	2 cut(s)	150, 155
BstAUI	TGTACA	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	27, 233
BstDEI	CTNAG	2 cut(s)	185, 390
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	2 cut(s)	288, 388
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 232
BstSCI	CCNGG	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	27, 233
Csp6I	GTAC	3 cut(s)	127, 332, 405
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	8 cut(s)	98, 106, 142, 184, 235, 296, 389, 401
CviKI_1	RGCY	8 cut(s)	98, 106, 142, 184, 235, 296, 389, 401
CviQI	GTAC	3 cut(s)	127, 332, 405
DdeI	CTNAG	2 cut(s)	185, 390
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	150, 155
EarI	CTCTTC	2 cut(s)	150, 155
Eco147I	AGGCCT	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	321
FaeI	CATG	1 cut(s)	97
FaiI	YATR	3 cut(s)	95, 161, 311
FaqI	GGGAC	2 cut(s)	192, 280
FatI	CATG	1 cut(s)	93
FauI	CCCGC	1 cut(s)	22
FspBI	CTAG	2 cut(s)	398, 408
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	2 cut(s)	281, 349
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	127, 129
Hpy188I	TCNGA	2 cut(s)	393, 422
Hpy188III	TCNNGA	4 cut(s)	19, 68, 239, 370
Hpy8I	GTNNAC	2 cut(s)	127, 129
HpyAV	CCTTC	2 cut(s)	103, 367
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 232
HpyF3I	CTNAG	2 cut(s)	185, 390
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	23, 61, 152, 212, 217, 236, 303
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	2 cut(s)	398, 408
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	137, 142, 395
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	2 cut(s)	321, 355
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	3 cut(s)	153, 246, 271
MseI	TTAA	1 cut(s)	77
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	139, 232
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	160
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	3 cut(s)	128, 333, 406
RsaNI	GTAC	3 cut(s)	127, 332, 405
SaqAI	TTAA	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	5 cut(s)	91, 298, 368, 391, 403
SfaNI	GCATC	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	2 cut(s)	321, 355
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	398, 408
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	47
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	321, 355
TatI	WGTACW	2 cut(s)	126, 331
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	244, 326
Van91I	CCANNNNNTGG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	321
XspI	CTAG	2 cut(s)	398, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.