Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004658

Physical Location & Seq

Genomic Coordinates Forward (+)

2091692 .. 2093975

Gene Structure 2284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1016000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTGCTGGTCTCGGCCGTACGGGATTACCTGAGTCGGATGTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTGGATTCCCACACGGTCAGTATAGTCAGCGTGGCGTATTCGCAATCCGAGCTTCTTCAGAAGGAAGTGTTTCTGGTGGAATTGGTAGACTCCATTTCCAAGTCCAGAGAATCCATGTCTCACCTCAAAGCCGTCTACTTCCTCGCACCCACTTCAGAGAATATACAGTATTTGCGCCGGCACTTGGTTGCTCCTCGATTTGGAGACTATCACCTCTTTTTCTCCAACATATTGAAGGATACCCAGATTCATATTTTAGCTGACTCAGATGAGCATGAAGTTGTGCAGCAACTTCAGAAGCGAAACAGAAAAATTTCTCCTTATGCTGGTATTGATAGGAGGGATGATCCTGTGACCCCGTTGCTGAATCAGTGGACCTATCAGGCAATGGTTCACGAATTGATTGGTATTCAAGACAACAAAGTCGACTTACGAAACATTGGAAAATTTCCAAAGGATCAACAGGAGGTTGTGCTGTCATCAGAACAAGATGCTTTTTTCAAAAAGAACATGTATGAGAACTTTGGTGATATTGGGATGAACATCAAGTTGGTTGGATTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009705 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0032588 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04144 map04138 map04144

Pfam Domains

Protein Families

Sec1

Protein Analysis

214

Amino Acids

24.53

Weight (kDa)

6.16

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	22 - 124	9.8e-22	Sec1 family
Sec1	PF00995	136 - 208	6e-23	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77140
fragaria_vesca	FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590
malus_domestica	MD05G1016500.v1.1 MD10G1016000.v1.1 MD10G1016100.v1.1
prunus_persica	Prupe.8G019800_v2.0.a1 Prupe.8G019800_v2.0.a1
pyrus_communis	pycom05g00910 pycom10g01040 pycom10g01050
rosa_chinensis	RchiOBHm_Chr6g0277061
rosa_laevigata	RLG00000013340
rosa_multiflora	Rmu_sc0000206.1_g000006
rosa_roxburghii	Rroxscaffold_7G00191710
rosa_rugosa	Rorug06G0106100 Rorug06G0106200 Rorug06G0106300 Rorug06G0106300 Rorug06G0106300 Rorug06G0106300
rosa_samantha	Rh6AG216000 Rh6BG220600 Rh6CG223400 Rh6DG213000
rosa_wichuraiana	Rw6G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	497
AccI	GTMKAC	3 cut(s)	162, 210, 501
AclWI	GGATC	2 cut(s)	416, 540
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	387, 521
AcuI	CTGAAG	3 cut(s)	116, 213, 353
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	3 cut(s)	259, 275, 401
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	3 cut(s)	310, 488, 577
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AluBI	AGCT	2 cut(s)	127, 335
AluI	AGCT	2 cut(s)	127, 335
Alw26I	GTCTC	3 cut(s)	16, 198, 273
AlwI	GGATC	2 cut(s)	416, 540
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	2 cut(s)	387, 521
AseI	ATTAAT	1 cut(s)	635
Asp700I	GAANNNNTTC	2 cut(s)	144, 388
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	450
AsuHPI	GGTGA	3 cut(s)	188, 278, 614
AvaII	GGWCC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	373
BceAI	ACGGC	2 cut(s)	2, 191
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	307
BcoDI	GTCTC	3 cut(s)	16, 198, 273
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	556
BsaBI	GATNNNNATC	1 cut(s)	617
BsaI	GGTCTC	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 275, 401
Bse118I	RCCGGY	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	617
BseBI	CCWGG	1 cut(s)	77
BseGI	GGATG	4 cut(s)	45, 72, 424, 618
BseJI	GATNNNNATC	1 cut(s)	617
BseLI	CCNNNNNNNGG	3 cut(s)	259, 275, 401
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	23, 354
BseRI	GAGGAG	1 cut(s)	258
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	57, 253
BsiWI	CGTACG	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	259, 275, 401
BsmAI	GTCTC	3 cut(s)	16, 198, 273
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	421, 532
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	24, 353
BspPI	GGATC	2 cut(s)	416, 540
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	252
BssMI	GATC	2 cut(s)	421, 532
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	91, 243
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	32, 340
BstF5I	GGATG	4 cut(s)	45, 72, 424, 618
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	424, 535
BstMAI	GTCTC	3 cut(s)	16, 198, 273
BstMBI	GATC	2 cut(s)	421, 532
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	373
BstZI	CGGCCG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	4 cut(s)	45, 72, 424, 618
BtsIMutI	CAGTG	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	4 cut(s)	61, 190, 350, 586
CviJI	RGCY	4 cut(s)	17, 127, 206, 335
CviKI_1	RGCY	4 cut(s)	17, 127, 206, 335
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	32, 340
DpnI	GATC	2 cut(s)	423, 534
DpnII	GATC	2 cut(s)	421, 532
DrdI	GACNNNNNNGTC	1 cut(s)	497
DseDI	GACNNNNNNGTC	1 cut(s)	497
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	450
Eco52I	CGGCCG	1 cut(s)	15
Eco57I	CTGAAG	3 cut(s)	116, 213, 353
EcoRII	CCWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	64, 193, 353, 589
FatI	CATG	4 cut(s)	60, 189, 349, 585
FblI	GTMKAC	3 cut(s)	162, 210, 501
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	4 cut(s)	52, 59, 431, 625
Fsp4HI	GCNGC	1 cut(s)	362
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	2 cut(s)	57, 253
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	64, 193, 353, 589
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	7 cut(s)	34, 80, 164, 185, 322, 338, 442
HpaII	CCGG	2 cut(s)	57, 253
HphI	GGTGA	3 cut(s)	188, 278, 614
Hpy166II	GTNNAC	5 cut(s)	163, 211, 450, 469, 502
Hpy188I	TCNGA	7 cut(s)	39, 124, 135, 232, 343, 372, 559
Hpy188III	TCNNGA	3 cut(s)	180, 470, 488
Hpy8I	GTNNAC	5 cut(s)	163, 211, 450, 469, 502
HpyAV	CCTTC	3 cut(s)	58, 130, 304
HpyCH4III	ACNGT	2 cut(s)	91, 243
HpyCH4V	TGCA	2 cut(s)	46, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	32, 340
Hsp92II	CATG	4 cut(s)	64, 193, 353, 589
HspAI	GCGC	1 cut(s)	250
KroI	GCCGGC	1 cut(s)	252
KroNI	GCCGGC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	421, 532
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	556
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	423, 534
MboI	GATC	2 cut(s)	421, 532
MboII	GAAGA	1 cut(s)	122
MluCI	AATT	5 cut(s)	155, 387, 473, 521, 636
MlyI	GAGTC	3 cut(s)	43, 158, 332
MmeI	TCCRAC	3 cut(s)	17, 324, 610
MnlI	CCTC	6 cut(s)	209, 227, 279, 299, 408, 535
MroNI	GCCGGC	1 cut(s)	252
MroXI	GAANNNNTTC	2 cut(s)	144, 388
MseI	TTAA	1 cut(s)	635
MspI	CCGG	2 cut(s)	57, 253
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	124
NaeI	GCCGGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	421, 532
NgoMIV	GCCGGC	1 cut(s)	252
NlaIII	CATG	4 cut(s)	64, 193, 353, 589
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	589
PciI	ACATGT	1 cut(s)	585
PdiI	GCCGGC	1 cut(s)	254
PdmI	GAANNNNTTC	2 cut(s)	144, 388
PfeI	GAWTC	4 cut(s)	80, 185, 322, 442
Pfl23II	CGTACG	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	3 cut(s)	42, 158, 332
PpsI	GAGTC	3 cut(s)	42, 158, 332
PscI	ACATGT	1 cut(s)	585
PshBI	ATTAAT	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspLI	CGTACG	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	450
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	2 cut(s)	421, 532
Sau96I	GGNCC	1 cut(s)	450
SchI	GAGTC	3 cut(s)	43, 158, 332
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	8 cut(s)	33, 69, 129, 201, 291, 337, 455, 546
SfaNI	GCATC	1 cut(s)	556
SinI	GGWCC	1 cut(s)	450
Sse9I	AATT	5 cut(s)	155, 387, 473, 521, 636
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	91, 243
TaqI	TCGA	2 cut(s)	271, 501
TasI	AATT	5 cut(s)	155, 387, 473, 521, 636
TfiI	GAWTC	4 cut(s)	80, 185, 322, 442
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	4 cut(s)	77, 314, 366, 629
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	450
VspI	ATTAAT	1 cut(s)	635
XapI	RAATTY	2 cut(s)	387, 521
XceI	RCATGY	1 cut(s)	589
XmiI	GTMKAC	3 cut(s)	162, 210, 501
XmnI	GAANNNNTTC	2 cut(s)	144, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.