Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004658

Physical Location & Seq

Genomic Coordinates Forward (+)

1149766 .. 1153237

Gene Structure 3472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTATGAGAACTTTGGTGATATTGGGATGAACATCAAGCAGTTGGTTGATGAATTTCAGCAAATTTCAAAAAGTAACCAGAACATCCAGACGATAGAGGACATGGCCAAGTTTGTTGACAATTACCCTGAGTACAGAAAGATGCACGGAAATGTTTCAAAGCATGTGGCACTGGTAACAGAAATGAGTAAGCTAGTTGAAGAGCGAAAACTTATGGTAGTTTCACAGACAGAACAGGAGTTGGCTTGCAATGGTGGGCAGGTGGCAGCTTTTGAGGCGGTGACAAATCTATTAAACAATGAAAGTGTATCTGATATTGACCGCCTACGTCTTGTCATGCTGTATGCCTTACGCTATGAGAAGGAGAGTCCTGTGCAACTAATGCAATTATTTAACAAACTGTCATCCAAGTCTCCCAAGTACAAGCCTGGGCTTGTCCAGTTTCTCTTGAAGCAAGCGGGTGTGGATAAGCGAACCGGGGATCTTTTTGGAAATCGAGATTTCTTAAACATTGCTCGTAACATGGCTCGTGGGCTGAAGGGGGTTGAGAATGTGTACACACAACACCAGCCTCTTCTCTTCCAAACTATGGAAAGCATCAGCAAGGGACGGCTGAGAGATGTGGATTATCCATTTGTGGGAAATCATTTCCAGCAGGGCAGGCCTCAAGAAGTGGTCATTTTCATTGTTGGGGGGACAACTTACGAGGAGTCTCGTTGTGTAGCTTTACAAAATGCTATGAATACTGGAATTCGCTTTATACTTGGTGGTTCTGTGATTCTCAATTCTAAAAGGTTCTTGAAGGACTTGGAAGAAGCTCAGAGACTAGCTCGTACTAGCAACGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009705 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0032588 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04144 map04138 map04144

Pfam Domains

Protein Families

Sec1

Protein Analysis

284

Amino Acids

32.18

Weight (kDa)

8.72

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77140
fragaria_vesca	FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590
malus_domestica	MD05G1016500.v1.1 MD10G1016000.v1.1 MD10G1016100.v1.1
prunus_persica	Prupe.8G019800_v2.0.a1 Prupe.8G019800_v2.0.a1
pyrus_communis	pycom05g00910 pycom10g01040 pycom10g01050
rosa_chinensis	RchiOBHm_Chr6g0277061
rosa_laevigata	RLG00000013340
rosa_multiflora	Rmu_sc0000206.1_g000006
rosa_roxburghii	Rroxscaffold_7G00191710
rosa_rugosa	Rorug06G0106100 Rorug06G0106200 Rorug06G0106300 Rorug06G0106300 Rorug06G0106300 Rorug06G0106300
rosa_samantha	Rh6AG216000 Rh6BG220600 Rh6CG223400 Rh6DG213000
rosa_wichuraiana	Rw6G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AccB7I	CCANNNNNTGG	1 cut(s)	589
AciI	CCGC	3 cut(s)	278, 322, 458
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	53, 63, 750
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	4 cut(s)	134, 422, 557, 835
AfiI	CCNNNNNNNGG	2 cut(s)	589, 638
AgsI	TTSAA	5 cut(s)	69, 159, 200, 451, 802
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	5 cut(s)	193, 269, 725, 818, 830
AluI	AGCT	5 cut(s)	193, 269, 725, 818, 830
Alw26I	GTCTC	3 cut(s)	417, 717, 817
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	2 cut(s)	105, 662
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	53, 63, 750
Asp700I	GAANNNNTTC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	29, 292
BalI	TGGCCA	1 cut(s)	107
BauI	CACGAG	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	626
BciT130I	CCWGG	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	3 cut(s)	417, 717, 817
BfaI	CTAG	3 cut(s)	194, 827, 837
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	429, 478
BmrFI	CCNGG	2 cut(s)	429, 478
BmsI	GCATC	2 cut(s)	132, 606
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpuEI	CTTGAG	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	428, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	589, 638
Bse1I	ACTGG	3 cut(s)	177, 439, 751
Bse3DI	GCAATG	2 cut(s)	256, 510
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	428, 477
BseGI	GGATG	3 cut(s)	33, 84, 404
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	589, 638
BseMI	GCAATG	2 cut(s)	256, 510
BseMII	CTCAG	3 cut(s)	120, 605, 833
BseNI	ACTGG	3 cut(s)	177, 439, 751
BseRI	GAGGAG	1 cut(s)	722
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	107, 664
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	621, 709
BslI	CCNNNNNNNGG	2 cut(s)	589, 638
BsmAI	GTCTC	3 cut(s)	417, 717, 817
BsmFI	GGGAC	2 cut(s)	621, 709
BsnI	GGCC	2 cut(s)	107, 664
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	3 cut(s)	278, 322, 458
BspANI	GGCC	2 cut(s)	107, 664
BspCNI	CTCAG	3 cut(s)	121, 606, 832
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	489
BspQI	GCTCTTC	1 cut(s)	195
BsrDI	GCAATG	2 cut(s)	256, 510
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	177, 439, 751
BssECI	CCNNGG	2 cut(s)	428, 477
BssMI	GATC	1 cut(s)	481
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	3 cut(s)	195, 579, 584
BstAPI	GCANNNNNTGC	1 cut(s)	382
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	247, 456, 662
BstDEI	CTNAG	3 cut(s)	129, 614, 819
BstF5I	GGATG	3 cut(s)	33, 84, 404
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	3 cut(s)	417, 717, 817
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 382, 661
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	427, 476
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	2 cut(s)	107, 664
BtsCI	GGATG	3 cut(s)	33, 84, 404
BtsIMutI	CAGTG	1 cut(s)	170
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	3 cut(s)	247, 456, 662
Csp6I	GTAC	4 cut(s)	133, 421, 556, 834
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	4 cut(s)	103, 164, 337, 523
CviQI	GTAC	4 cut(s)	133, 421, 556, 834
DdeI	CTNAG	3 cut(s)	129, 614, 819
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	3 cut(s)	195, 579, 584
EarI	CTCTTC	3 cut(s)	195, 579, 584
Eco147I	AGGCCT	1 cut(s)	664
Eco57I	CTGAAG	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	427
FaeI	CATG	4 cut(s)	106, 167, 340, 526
FaqI	GGGAC	2 cut(s)	621, 709
FatI	CATG	4 cut(s)	102, 163, 336, 522
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	3 cut(s)	40, 71, 391
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	3 cut(s)	194, 827, 837
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	107, 664
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	4 cut(s)	106, 167, 340, 526
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	367, 710, 778
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	2 cut(s)	29, 292
Hpy166II	GTNNAC	3 cut(s)	118, 556, 558
Hpy188I	TCNGA	3 cut(s)	313, 822, 851
Hpy188III	TCNNGA	5 cut(s)	88, 448, 497, 668, 799
Hpy8I	GTNNAC	3 cut(s)	118, 556, 558
HpyAV	CCTTC	3 cut(s)	355, 532, 796
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	4 cut(s)	145, 249, 376, 385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 382, 661
HpyF3I	CTNAG	3 cut(s)	129, 614, 819
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	4 cut(s)	106, 167, 340, 526
Kzo9I	GATC	1 cut(s)	481
LguI	GCTCTTC	1 cut(s)	195
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	2 cut(s)	132, 606
MaeI	CTAG	3 cut(s)	194, 827, 837
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	4 cut(s)	74, 175, 280, 518
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	4 cut(s)	212, 566, 571, 824
MflI	RGATCY	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	6 cut(s)	53, 63, 121, 386, 750, 784
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	376, 719
MnlI	CCTC	5 cut(s)	91, 268, 582, 675, 700
Mox20I	TGGCCA	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	3 cut(s)	293, 393, 506
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	429, 478
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	275, 382, 661
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	4 cut(s)	106, 167, 340, 526
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	664
PciSI	GCTCTTC	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	778
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	375, 718
PpsI	GAGTC	2 cut(s)	375, 718
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	4 cut(s)	134, 422, 557, 835
RsaNI	GTAC	4 cut(s)	133, 421, 556, 834
RseI	CAYNNNNRTG	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	293, 393, 506
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	481
SchI	GAGTC	2 cut(s)	376, 719
ScrFI	CCNGG	2 cut(s)	429, 478
SetI	ASST	8 cut(s)	195, 264, 271, 331, 727, 797, 820, 832
SfaNI	GCATC	2 cut(s)	132, 606
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	6 cut(s)	53, 63, 121, 386, 750, 784
SseBI	AGGCCT	1 cut(s)	664
SsiI	CCGC	3 cut(s)	278, 322, 458
SspMI	CTAG	3 cut(s)	194, 827, 837
StuI	AGGCCT	1 cut(s)	664
StyD4I	CCNGG	2 cut(s)	427, 476
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	496
TasI	AATT	6 cut(s)	53, 63, 121, 386, 750, 784
TatI	WGTACW	3 cut(s)	132, 420, 555
TfiI	GAWTC	1 cut(s)	778
Tru1I	TTAA	3 cut(s)	293, 393, 506
Tru9I	TTAA	3 cut(s)	293, 393, 506
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	5 cut(s)	44, 66, 315, 673, 755
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	589
XapI	RAATTY	3 cut(s)	53, 63, 750
XceI	RCATGY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	3 cut(s)	194, 827, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.