Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011649

Physical Location & Seq

Genomic Coordinates Reverse (-)

16473521 .. 16475422

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1076900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCTTGTTGTTGGTCGAATACTTCTCGGTTTTGGCATTGGATGTGCCAACCAGTCTGTGCCAATTTATGTTTCTGAGGTAGCCCCATACAAATACCGTGGTGCTTTAAACATGATGTTCCAATTGTCAATCACTATTGGAATACTTGCTGCTGGTGTCATAAACTATTTTTTTGCTGAGATCAAAGGAGGTTGGGGATGGCGCTTGAGTTTGGGTGGTGCTGCAGTCCCTGCAATTATGATCATGATCGGCGCGCTAGTGTTACCGGAAACTCCAAACTCTTTGGTTGAGCGTGGCAAGAATGAGGAAGCCAAATCTCAGCTCCTCAAAATTAGAGGCGTCGCCAATGTTGACGAGGAGTTTGATGACCTAGTCGCGGCGAGTGATGCATCTAAGTTGGTCAAACATCCCTGGGAAACCTTGTTGACGAAGAAATACAGACCTCAGCTTGTTTTTGCACTTGCAATTCCTGCCTTTCAGCAGCTTACCGGCATGAATGTGATCACATTTTATGCCCCCGTCTTGTTCAAAACAATGGGATTTGGAAGTAGCGCTTCTCTCATGTCCACCGTTATCACCAACGCTGTTAACGCCGTAGCAACCCTTGTTTCGATTTTCACTGTTGATAAGGTTGGAAGGAGGACCCTTTTCATTGAGGGAGGTGCTCAAATGTTCCTCACCCAGGTGATTATTGGAATTGCAATAGCTGTTAAATTTGGGGTTAGTGGCAACCCTGGTGAATTGTCCAAGGGTTTTGTTGATGGCTTGCTGGCGTGCATTTGTGTATATGTTGCTGGATTTGCATGGTCTTGGGGACCTCTAGGATGGTTGGTGCCAAGTGAAATTTTCCCTCTTGAAGTAAGGTCAGCTGCTCAATCCATCAATGTCGCTACCAACATGATCTTCACTTTCGTCATAGCTCAAGTTTTCACCACAATGCTTTGCCACTTGAAGTTCGGCTTGTTCTTCTTCTTTGCGTTCTGGGTCCTAATCATGAACATCTTAATTTACAAGTATTTACCAGAAACTAAAGGGGTTCCGATCGAAGATATGCACACTATCTGGCAGAAGCACCCATTTTGGAAGAAGTACGTCCTTCAAGACAAAGGCATTGCAATGGGCAAGGAAGGACATGATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

382

Amino Acids

41.77

Weight (kDa)

8.74

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 355	6.3e-105	Sugar (and other) transporter
MFS_1	PF07690	1 - 304	1.2e-16	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21480
fragaria_vesca	FvH4_5g01480
malus_domestica	MD02G1190700.v1.1 MD05G1076900.v1.1 MD06G1072400.v1.1
prunus_persica	Prupe.1G155000_v2.0.a1 Prupe.5G083900_v2.0.a1 Prupe.5G090900_v2.0.a1 Prupe.5G091100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199221
rosa_laevigata	RLG00000003805
rosa_multiflora	Rmu_sc0000950.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256950
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177300 Rh7BG180800 Rh7CG186500 Rh7DG180400
rosa_wichuraiana	Rw7G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	832
AccII	CGCG	2 cut(s)	254, 377
AciI	CCGC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	713, 843
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	1091
AfeI	AGCGCT	1 cut(s)	553
AfiI	CCNNNNNNNGG	2 cut(s)	376, 682
AgsI	TTSAA	4 cut(s)	529, 857, 952, 1100
AjnI	CCWGG	3 cut(s)	410, 681, 733
AjuI	GAANNNNNNNTTGG	4 cut(s)	55, 87, 887, 919
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	6 cut(s)	322, 448, 484, 707, 869, 920
AluI	AGCT	6 cut(s)	322, 448, 484, 707, 869, 920
Alw21I	GWGCWC	1 cut(s)	667
AlwNI	CAGNNNCTG	1 cut(s)	230
Aor51HI	AGCGCT	1 cut(s)	553
ApeKI	GCWGC	4 cut(s)	149, 221, 481, 869
ApoI	RAATTY	2 cut(s)	713, 843
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AspLEI	GCGC	4 cut(s)	204, 254, 256, 554
AspS9I	GGNCC	3 cut(s)	642, 815, 985
AsuHPI	GGTGA	5 cut(s)	568, 670, 697, 749, 922
AvaII	GGWCC	3 cut(s)	642, 815, 985
BanI	GGYRCC	1 cut(s)	832
Bbv12I	GWGCWC	1 cut(s)	667
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	136, 208, 493, 856
BccI	CCATC	4 cut(s)	192, 755, 819, 887
BceAI	ACGGC	1 cut(s)	578
BciT130I	CCWGG	3 cut(s)	412, 683, 735
BclI	TGATCA	2 cut(s)	240, 501
BfaI	CTAG	4 cut(s)	257, 371, 821, 1144
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	2 cut(s)	205, 555
BisI	GCNGC	5 cut(s)	150, 222, 378, 482, 870
BlsI	GCNGC	5 cut(s)	151, 223, 379, 483, 871
Bme1390I	CCNGG	3 cut(s)	412, 683, 735
Bme18I	GGWCC	3 cut(s)	642, 815, 985
BmgT120I	GGNCC	3 cut(s)	642, 815, 985
BmiI	GGNNCC	5 cut(s)	644, 816, 834, 986, 1038
BmrFI	CCNGG	3 cut(s)	412, 683, 735
BmsI	GCATC	2 cut(s)	376, 398
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	226, 906
BsaBI	GATNNNNATC	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	6 cut(s)	97, 410, 411, 681, 733, 747
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 682
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	2 cut(s)	1110, 1122
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	3 cut(s)	412, 683, 735
BseDI	CCNNGG	6 cut(s)	97, 410, 411, 681, 733, 747
BseGI	GGATG	4 cut(s)	47, 203, 406, 830
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	376, 682
BseMI	GCAATG	2 cut(s)	1110, 1122
BseMII	CTCAG	4 cut(s)	66, 168, 332, 458
BseNI	ACTGG	1 cut(s)	52
BsePI	GCGCGC	1 cut(s)	252
BseRI	GAGGAG	2 cut(s)	314, 371
BseXI	GCAGC	4 cut(s)	136, 208, 493, 856
Bsh1236I	CGCG	2 cut(s)	254, 377
Bsh1285I	CGRYCG	1 cut(s)	1044
BshNI	GGYRCC	1 cut(s)	832
BsiEI	CGRYCG	1 cut(s)	1044
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	266, 489
BslFI	GGGAC	2 cut(s)	212, 828
BslI	CCNNNNNNNGG	2 cut(s)	376, 682
BsmFI	GGGAC	2 cut(s)	212, 828
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	6 cut(s)	180, 240, 246, 501, 900, 1041
BspACI	CCGC	1 cut(s)	377
BspCNI	CTCAG	4 cut(s)	67, 169, 331, 457
BspFNI	CGCG	2 cut(s)	254, 377
BspHI	TCATGA	2 cut(s)	243, 993
BspLI	GGNNCC	5 cut(s)	644, 816, 834, 986, 1038
BspMAI	CTGCAG	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	832
BsrDI	GCAATG	2 cut(s)	1110, 1122
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	6 cut(s)	97, 410, 411, 681, 733, 747
BssHII	GCGCGC	1 cut(s)	252
BssMI	GATC	6 cut(s)	180, 240, 246, 501, 900, 1041
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	3 cut(s)	412, 683, 735
Bst4CI	ACNGT	3 cut(s)	98, 571, 622
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	2 cut(s)	230, 470
BstC8I	GCNNGC	4 cut(s)	254, 767, 771, 775
BstDEI	CTNAG	5 cut(s)	75, 177, 318, 393, 444
BstDSI	CCRYGG	1 cut(s)	97
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	4 cut(s)	47, 203, 406, 830
BstFNI	CGCG	2 cut(s)	254, 377
BstH2I	RGCGCY	2 cut(s)	205, 555
BstHHI	GCGC	4 cut(s)	204, 254, 256, 554
BstKTI	GATC	6 cut(s)	183, 243, 249, 504, 903, 1044
BstMBI	GATC	6 cut(s)	180, 240, 246, 501, 900, 1041
BstMCI	CGRYCG	1 cut(s)	1044
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 386, 470, 590, 800
BstNI	CCWGG	3 cut(s)	412, 683, 735
BstSCI	CCNGG	3 cut(s)	410, 681, 733
BstSFI	CTRYAG	1 cut(s)	222
BstUI	CGCG	2 cut(s)	254, 377
BstV1I	GCAGC	4 cut(s)	136, 208, 493, 856
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	4 cut(s)	47, 203, 406, 830
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	4 cut(s)	254, 767, 771, 775
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	2 cut(s)	243, 993
CfoI	GCGC	4 cut(s)	204, 254, 256, 554
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	642, 815, 985
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	1090
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	8 cut(s)	112, 244, 493, 562, 804, 898, 994, 1133
CviQI	GTAC	1 cut(s)	1090
DdeI	CTNAG	5 cut(s)	75, 177, 318, 393, 444
DpnI	GATC	6 cut(s)	182, 242, 248, 503, 902, 1043
DpnII	GATC	6 cut(s)	180, 240, 246, 501, 900, 1041
DraI	TTTAAA	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	747
Eco47I	GGWCC	3 cut(s)	642, 815, 985
Eco47III	AGCGCT	1 cut(s)	553
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoO109I	RGGNCCY	3 cut(s)	642, 815, 985
EcoRII	CCWGG	3 cut(s)	410, 681, 733
EcoT14I	CCWWGG	1 cut(s)	747
EcoT22I	ATGCAT	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	8 cut(s)	115, 247, 496, 565, 807, 901, 997, 1136
FalI	AAGNNNNNCTT	4 cut(s)	538, 570, 944, 976
FaqI	GGGAC	2 cut(s)	212, 828
FatI	CATG	8 cut(s)	111, 243, 492, 561, 803, 897, 993, 1132
FbaI	TGATCA	2 cut(s)	240, 501
Fnu4HI	GCNGC	5 cut(s)	150, 222, 378, 482, 870
FokI	GGATG	4 cut(s)	54, 210, 393, 837
Fsp4HI	GCNGC	5 cut(s)	150, 222, 378, 482, 870
FspBI	CTAG	4 cut(s)	257, 371, 821, 1144
GlaI	GCGC	4 cut(s)	203, 253, 255, 553
GluI	GCNGC	5 cut(s)	150, 222, 378, 482, 870
HaeII	RGCGCY	2 cut(s)	205, 555
HapII	CCGG	2 cut(s)	266, 489
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	4 cut(s)	204, 254, 256, 554
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	8 cut(s)	115, 247, 496, 565, 807, 901, 997, 1136
Hin6I	GCGC	4 cut(s)	202, 252, 254, 552
HinP1I	GCGC	4 cut(s)	202, 252, 254, 552
HincII	GTYRAC	3 cut(s)	352, 426, 589
HindII	GTYRAC	3 cut(s)	352, 426, 589
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	2 cut(s)	266, 489
HphI	GGTGA	5 cut(s)	568, 670, 697, 749, 922
Hpy166II	GTNNAC	4 cut(s)	352, 426, 567, 589
Hpy188I	TCNGA	2 cut(s)	76, 1041
Hpy188III	TCNNGA	4 cut(s)	244, 854, 994, 1100
Hpy8I	GTNNAC	4 cut(s)	352, 426, 567, 589
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	630, 1106, 1121
HpyCH4III	ACNGT	3 cut(s)	98, 571, 622
HpyCH4IV	ACGT	1 cut(s)	1092
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 386, 470, 590, 800
HpyF3I	CTNAG	5 cut(s)	75, 177, 318, 393, 444
HpySE526I	ACGT	1 cut(s)	1092
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	8 cut(s)	115, 247, 496, 565, 807, 901, 997, 1136
HspAI	GCGC	4 cut(s)	202, 252, 254, 552
Ksp22I	TGATCA	2 cut(s)	240, 501
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	6 cut(s)	180, 240, 246, 501, 900, 1041
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	4 cut(s)	136, 208, 493, 856
LweI	GCATC	2 cut(s)	376, 398
MaeI	CTAG	4 cut(s)	257, 371, 821, 1144
MaeII	ACGT	1 cut(s)	1092
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	6 cut(s)	182, 242, 248, 503, 902, 1043
MboI	GATC	6 cut(s)	180, 240, 246, 501, 900, 1041
MboII	GAAGA	6 cut(s)	442, 895, 958, 961, 1058, 1096
MfeI	CAATTG	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	4 cut(s)	107, 588, 711, 1004
MslI	CAYNNNNRTG	5 cut(s)	497, 683, 935, 1115, 1137
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	2 cut(s)	266, 489
MspR9I	CCNGG	3 cut(s)	412, 683, 735
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	3 cut(s)	412, 683, 735
MvnI	CGCG	2 cut(s)	254, 377
MwoI	GCNNNNNNNGC	5 cut(s)	230, 386, 470, 590, 800
NdeII	GATC	6 cut(s)	180, 240, 246, 501, 900, 1041
NlaIII	CATG	8 cut(s)	115, 247, 496, 565, 807, 901, 997, 1136
NlaIV	GGNNCC	5 cut(s)	644, 816, 834, 986, 1038
NsiI	ATGCAT	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	683
PagI	TCATGA	2 cut(s)	243, 993
PasI	CCCWGGG	1 cut(s)	411
PauI	GCGCGC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	371
PkrI	GCNGC	5 cut(s)	151, 223, 379, 483, 871
Ple19I	CGATCG	1 cut(s)	1044
PpuMI	RGGWCCY	3 cut(s)	642, 815, 985
Psp5II	RGGWCCY	3 cut(s)	642, 815, 985
Psp6I	CCWGG	3 cut(s)	410, 681, 733
PspGI	CCWGG	3 cut(s)	410, 681, 733
PspN4I	GGNNCC	5 cut(s)	644, 816, 834, 986, 1038
PspPI	GGNCC	3 cut(s)	642, 815, 985
PspPPI	RGGWCCY	3 cut(s)	642, 815, 985
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	230
PsyI	GACNNNGTC	1 cut(s)	371
PteI	GCGCGC	1 cut(s)	252
PvuI	CGATCG	1 cut(s)	1044
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	1 cut(s)	1091
RsaNI	GTAC	1 cut(s)	1090
RseI	CAYNNNNRTG	5 cut(s)	497, 683, 935, 1115, 1137
SaqAI	TTAA	4 cut(s)	107, 588, 711, 1004
SatI	GCNGC	5 cut(s)	150, 222, 378, 482, 870
Sau3AI	GATC	6 cut(s)	180, 240, 246, 501, 900, 1041
Sau96I	GGNCC	3 cut(s)	642, 815, 985
ScrFI	CCNGG	3 cut(s)	412, 683, 735
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	376, 398
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	3 cut(s)	642, 815, 985
SmiMI	CAYNNNNRTG	5 cut(s)	497, 683, 935, 1115, 1137
SmlI	CTYRAG	2 cut(s)	205, 921
SmoI	CTYRAG	2 cut(s)	205, 921
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	4 cut(s)	257, 371, 821, 1144
StyD4I	CCNGG	3 cut(s)	410, 681, 733
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	3 cut(s)	98, 571, 622
TaiI	ACGT	1 cut(s)	1095
TaqI	TCGA	3 cut(s)	16, 611, 1044
TauI	GCSGC	1 cut(s)	380
Tru1I	TTAA	4 cut(s)	107, 588, 711, 1004
Tru9I	TTAA	4 cut(s)	107, 588, 711, 1004
TscAI	CASTG	1 cut(s)	625
TseI	GCWGC	4 cut(s)	149, 221, 481, 869
TspDTI	ATGAA	3 cut(s)	509, 640, 1010
TspRI	CASTG	1 cut(s)	625
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	3 cut(s)	642, 815, 985
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	2 cut(s)	713, 843
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XspI	CTAG	4 cut(s)	257, 371, 821, 1144
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.