Rorug07G0053500
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000958
Physical Location & Seq
Reverse (-)
3781362 .. 3786635
5274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0053500.1

Sequence Viewer

Length: 1407 bp
ATGCAAGAAGCAAAGTTGGCAAATCCTACCCTTCCTCCCAGTGCTCAGCTTGTCGGCAATGCCTTTGTGGAGCAATACTACCAAGTCCTTCACCACTCGCCAGAATTAGTGTATAAGTTTTATCAAGATTCAAGCGCTTTAAGCAGGACAGATATCAATGGCAATATGACAACAGTCAAAACCATGGATGCAATAAGGGTAAAAATTAAATCCTTAAATTACGAAGAGTATACAGCAGAAATAAAGACTGCAGATGCTCAGGAATCTTTTGAGAAAGGGGTGATTGTTTTAGTAACTGGATGCTTGACTGGAAAAGACAACGTGGGAAGGAAATTCACCCAAACGTTCTTCCTAGCTCCACAGGAAAATGGGTACTTCGTCTTAAATGATGTTTTTAGGTATATCGAGGACAATGAATCATCACAGACTAACAGTGTCCCGGTTAACACCATTGATGAAAGTGCTCCAGAAGCTGCCTTGATAGCAGAACCAGAACCTACTCAAGCTCCTGATCATCTTGTGGTGGAGGAACCTGCAAGTTCCTTGGATGAGGATCCCAATAATGGACCCGAAGTTTGTGATCCTTCAGATAATGAGGAAGGATCAGTTATTGAAGAAGAGGTTGTGATAGAGGATCCCCCAATTGAATCAAGTCAGAGTAGAGATCTTCCAGAAGTTGATCCAATCCCTGAAACCCAGGAGGATGCTCCAAAGAAATCATATGCATCAATTGTAAAGGTAATGAAAAGTAGCATCGCATCCAGTCCTGTCCGTGATGCCCGAGTGAGGACAGTATCTGCAAACACTGACCATCCATCCCTTGGTTCCGCAAAACCTTCTCCGGTACCAGAGGCATCAGCTCCTAGTGGTGATGCTGCTCCGGAAAGTAGCAATGCTCATGAGGAAGCTGAAGGTCACTCCATACATGTAAGGAATTTGCCGTATGATGCAACTGTCGAACAACTTGAGAAGGAGTTTAAGAAATTTGGGTCTATTAAGCGGGACGGGATCCAAGTCAGAAGTAGTAAGCAAGGATTCTGTTTTGGCTTTGTTGAATTTGAAAGCGTGAGTTCCATGCAAAGTGCACTTGAGGCTTCACCTATCATGATCGGCGATCGTCAAGCAGTGATTGAGGAAAAGAGAACCACAACCCGAGTTAGCAATGGTGGAAGAGGGAGGTTTTCTTCCGGAAGAGCTGGCTTCCGAAGTGACTCTTTCAGGGGTGGTCGTGGAAACTATGGTGGTAGCCGTAGCTTTGGAAGGAATGAATTCAGAAACCAGGGTGAGTTTTCACGATCCAAGTCATCAGCTGGACGCAATGGAGAGGGTTATCAGCGCGTCAATCCAAATGGAAGGGGTGGTGGTCGCCAAGGGGCAGCAAACAACCGCAGCTCTGTTCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

468

Amino Acids

50.89

Weight (kDa)

4.99

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 18 - 134 9.4e-32 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 309 - 365 7.1e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 541
Acc65I GGTACC 1 cut(s) 844
AccB1I GGYRCC 1 cut(s) 844
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 230
AccII CGCG 1 cut(s) 1338
AccIII TCCGGA 2 cut(s) 880, 1187
AciI CCGC 3 cut(s) 828, 1000, 1387
AclI AACGTT 1 cut(s) 344
AcsI RAATTY 5 cut(s) 332, 934, 983, 1055, 1268
AcuI CTGAAG 2 cut(s) 570, 930
AfaI GTAC 2 cut(s) 374, 846
AfeI AGCGCT 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 563, 786, 821
AflIII ACRYGT 1 cut(s) 925
AgsI TTSAA 5 cut(s) 132, 614, 647, 1055, 1061
AjnI CCWGG 2 cut(s) 696, 1278
Alw21I GWGCWC 3 cut(s) 46, 466, 1087
Alw44I GTGCAC 1 cut(s) 1083
AlwNI CAGNNNCTG 2 cut(s) 473, 797
Ama87I CYCGRG 2 cut(s) 780, 1152
Aor13HI TCCGGA 2 cut(s) 880, 1187
Aor51HI AGCGCT 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 1083
ApeKI GCWGC 4 cut(s) 473, 875, 1376, 1389
ApoI RAATTY 5 cut(s) 332, 934, 983, 1055, 1268
ArsI GACNNNNNNTTYG 2 cut(s) 558, 590
Asp700I GAANNNNTTC 1 cut(s) 1268
Asp718I GGTACC 1 cut(s) 844
AspLEI GCGC 2 cut(s) 137, 1338
AspS9I GGNCC 1 cut(s) 566
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 6 cut(s) 83, 292, 328, 881, 1089, 1295
AvaI CYCGRG 2 cut(s) 780, 1152
AvaII GGWCC 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 1087
BamHI GGATCC 3 cut(s) 553, 634, 1008
BanI GGYRCC 1 cut(s) 844
Bbv12I GWGCWC 3 cut(s) 46, 466, 1087
BbvI GCAGC 4 cut(s) 460, 862, 1388, 1401
BccI CCATC 2 cut(s) 819, 823
BceAI ACGGC 2 cut(s) 925, 1233
BciT130I CCWGG 2 cut(s) 698, 1280
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 440
BfaI CTAG 2 cut(s) 353, 864
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 541
BglII AGATCT 1 cut(s) 664
BisI GCNGC 4 cut(s) 474, 876, 1377, 1390
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 4 cut(s) 475, 877, 1378, 1391
Bme1390I CCNGG 3 cut(s) 440, 698, 1280
Bme18I GGWCC 1 cut(s) 566
BmeT110I CYCGRG 2 cut(s) 780, 1152
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 7 cut(s) 531, 555, 568, 636, 826, 846, 1010
BmrFI CCNGG 3 cut(s) 440, 698, 1280
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BoxI GACNNNNGTC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 3 cut(s) 486, 986, 1109
BpuMI CCSGG 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 552
BsaJI CCNNGG 6 cut(s) 183, 543, 696, 820, 1279, 1369
BsaWI WCCGGW 3 cut(s) 841, 880, 1187
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 490, 520
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 786, 821
Bse1I ACTGG 4 cut(s) 39, 301, 313, 762
Bse3DI GCAATG 4 cut(s) 64, 898, 1168, 1324
Bse8I GATNNNNATC 1 cut(s) 552
BseAI TCCGGA 2 cut(s) 880, 1187
BseBI CCWGG 2 cut(s) 698, 1280
BseDI CCNNGG 6 cut(s) 183, 543, 696, 820, 1279, 1369
BseGI GGATG 7 cut(s) 193, 305, 553, 709, 758, 811, 815
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 3 cut(s) 563, 786, 821
BseMI GCAATG 4 cut(s) 64, 898, 1168, 1324
BseMII CTCAG 2 cut(s) 59, 272
BseNI ACTGG 4 cut(s) 39, 301, 313, 762
BseSI GKGCMC 1 cut(s) 1087
BseXI GCAGC 4 cut(s) 460, 862, 1388, 1401
Bsh1236I CGCG 1 cut(s) 1338
Bsh1285I CGRYCG 1 cut(s) 1117
BshNI GGYRCC 1 cut(s) 844
BsiEI CGRYCG 1 cut(s) 1117
BsiHKAI GWGCWC 3 cut(s) 46, 466, 1087
BsiHKCI CYCGRG 2 cut(s) 780, 1152
BsiSI CCGG 4 cut(s) 440, 842, 881, 1188
BslFI GGGAC 2 cut(s) 422, 1016
BslI CCNNNNNNNGG 3 cut(s) 563, 786, 821
BsmFI GGGAC 2 cut(s) 422, 1016
BsoBI CYCGRG 2 cut(s) 780, 1152
Bsp1286I GDGCHC 3 cut(s) 46, 466, 1087
Bsp13I TCCGGA 2 cut(s) 880, 1187
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 3 cut(s) 828, 1000, 1387
BspCNI CTCAG 2 cut(s) 58, 271
BspEI TCCGGA 2 cut(s) 880, 1187
BspFNI CGCG 1 cut(s) 1338
BspHI TCATGA 2 cut(s) 898, 1104
BspLI GGNNCC 7 cut(s) 531, 555, 568, 636, 826, 846, 1010
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 541
BspQI GCTCTTC 1 cut(s) 1186
BspT107I GGYRCC 1 cut(s) 844
BsrDI GCAATG 4 cut(s) 64, 898, 1168, 1324
BsrI ACTGG 4 cut(s) 39, 301, 313, 762
BssECI CCNNGG 6 cut(s) 183, 543, 696, 820, 1279, 1369
BssNAI GTATAC 1 cut(s) 231
BssT1I CCWWGG 4 cut(s) 183, 543, 820, 1369
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 698, 1280
Bst4CI ACNGT 4 cut(s) 175, 434, 793, 955
Bst6I CTCTTC 4 cut(s) 219, 612, 1165, 1186
BstC8I GCNNGC 1 cut(s) 1198
BstDEI CTNAG 2 cut(s) 45, 258
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 7 cut(s) 193, 305, 553, 709, 758, 811, 815
BstFNI CGCG 1 cut(s) 1338
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 1338
BstMCI CGRYCG 1 cut(s) 1117
BstMWI GCNNNNNNNGC 5 cut(s) 17, 141, 470, 482, 1091
BstNI CCWGG 2 cut(s) 698, 1280
BstNSI RCATGY 1 cut(s) 929
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 438, 696, 1278
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 1087
BstUI CGCG 1 cut(s) 1338
BstV1I GCAGC 4 cut(s) 460, 862, 1388, 1401
BstX2I RGATCY 4 cut(s) 553, 634, 664, 1008
BstYI RGATCY 4 cut(s) 553, 634, 664, 1008
BstZ17I GTATAC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 739
BtsCI GGATG 7 cut(s) 193, 305, 553, 709, 758, 811, 815
BtsI GCAGTG 1 cut(s) 1131
BtsIMutI CAGTG 4 cut(s) 46, 439, 804, 1131
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 1198
CaiI CAGNNNCTG 2 cut(s) 473, 797
CciI TCATGA 2 cut(s) 898, 1104
CfoI GCGC 2 cut(s) 137, 1338
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 2 cut(s) 1323, 1327
Csp6I GTAC 2 cut(s) 373, 845
CviAII CATG 5 cut(s) 184, 899, 926, 1075, 1105
CviQI GTAC 2 cut(s) 373, 845
DdeI CTNAG 2 cut(s) 45, 258
Eam1104I CTCTTC 4 cut(s) 219, 612, 1165, 1186
EarI CTCTTC 4 cut(s) 219, 612, 1165, 1186
Eco130I CCWWGG 4 cut(s) 183, 543, 820, 1369
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 566
Eco47III AGCGCT 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 570, 930
Eco88I CYCGRG 2 cut(s) 780, 1152
EcoRI GAATTC 1 cut(s) 1268
EcoRII CCWGG 2 cut(s) 696, 1278
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 4 cut(s) 183, 543, 820, 1369
EcoT22I ATGCAT 1 cut(s) 727
ErhI CCWWGG 4 cut(s) 183, 543, 820, 1369
FaeI CATG 5 cut(s) 187, 902, 929, 1078, 1108
FalI AAGNNNNNCTT 2 cut(s) 1198, 1230
FaqI GGGAC 2 cut(s) 422, 1016
FatI CATG 5 cut(s) 183, 898, 925, 1074, 1104
FauI CCCGC 1 cut(s) 993
FauNDI CATATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 4 cut(s) 474, 876, 1377, 1390
FokI GGATG 7 cut(s) 200, 312, 560, 716, 745, 798, 802
Fsp4HI GCNGC 4 cut(s) 474, 876, 1377, 1390
FspBI CTAG 2 cut(s) 353, 864
GlaI GCGC 2 cut(s) 136, 1337
GluI GCNGC 4 cut(s) 474, 876, 1377, 1390
GsuI CTGGAG 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 138
HapII CCGG 4 cut(s) 440, 842, 881, 1188
HgaI GACGC 2 cut(s) 1323, 1327
HhaI GCGC 2 cut(s) 137, 1338
Hin1II CATG 5 cut(s) 187, 902, 929, 1078, 1108
Hin6I GCGC 2 cut(s) 135, 1336
HinP1I GCGC 2 cut(s) 135, 1336
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 6 cut(s) 128, 263, 416, 647, 1035, 1211
HpaI GTTAAC 1 cut(s) 445
HpaII CCGG 4 cut(s) 440, 842, 881, 1188
HphI GGTGA 6 cut(s) 83, 292, 328, 881, 1089, 1295
Hpy166II GTNNAC 3 cut(s) 231, 445, 1085
Hpy188I TCNGA 5 cut(s) 589, 657, 1019, 1205, 1274
Hpy8I GTNNAC 3 cut(s) 231, 445, 1085
HpyCH4III ACNGT 4 cut(s) 175, 434, 793, 955
HpyCH4IV ACGT 2 cut(s) 321, 344
HpyCH4V TGCA 9 cut(s) 4, 191, 251, 536, 725, 800, 950, 1078, 1085
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 141, 470, 482, 1091
HpyF3I CTNAG 2 cut(s) 45, 258
HpySE526I ACGT 2 cut(s) 321, 344
Hsp92II CATG 5 cut(s) 187, 902, 929, 1078, 1108
HspAI GCGC 2 cut(s) 135, 1336
Kpn2I TCCGGA 2 cut(s) 880, 1187
KpnI GGTACC 1 cut(s) 848
Ksp22I TGATCA 1 cut(s) 511
KspAI GTTAAC 1 cut(s) 445
LguI GCTCTTC 1 cut(s) 1186
LmnI GCTCC 7 cut(s) 70, 361, 469, 511, 712, 865, 883
Lsp1109I GCAGC 4 cut(s) 460, 862, 1388, 1401
MaeI CTAG 2 cut(s) 353, 864
MaeII ACGT 2 cut(s) 321, 344
MaeIII GTNAC 3 cut(s) 292, 914, 1208
MboII GAAGA 8 cut(s) 236, 340, 626, 629, 659, 1176, 1182, 1203
MfeI CAATTG 2 cut(s) 642, 729
MflI RGATCY 4 cut(s) 553, 634, 664, 1008
MhlI GDGCHC 3 cut(s) 46, 466, 1087
MlyI GAGTC 1 cut(s) 1205
Mph1103I ATGCAT 1 cut(s) 727
MroI TCCGGA 2 cut(s) 880, 1187
MroXI GAANNNNTTC 1 cut(s) 1268
MseI TTAA 7 cut(s) 140, 207, 215, 383, 444, 978, 996
MspA1I CMGCKG 1 cut(s) 1310
MspI CCGG 4 cut(s) 440, 842, 881, 1188
MspR9I CCNGG 3 cut(s) 440, 698, 1280
MunI CAATTG 2 cut(s) 642, 729
MvaI CCWGG 2 cut(s) 698, 1280
MvnI CGCG 1 cut(s) 1338
MwoI GCNNNNNNNGC 5 cut(s) 17, 141, 470, 482, 1091
NciI CCSGG 1 cut(s) 440
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 721
NlaIII CATG 5 cut(s) 187, 902, 929, 1078, 1108
NlaIV GGNNCC 7 cut(s) 531, 555, 568, 636, 826, 846, 1010
NmuCI GTSAC 2 cut(s) 914, 1208
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 929
PagI TCATGA 2 cut(s) 898, 1104
PciI ACATGT 1 cut(s) 925
PciSI GCTCTTC 1 cut(s) 1186
PdmI GAANNNNTTC 1 cut(s) 1268
PfeI GAWTC 5 cut(s) 128, 263, 416, 647, 1035
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 4 cut(s) 475, 877, 1378, 1391
Ple19I CGATCG 1 cut(s) 1117
PleI GAGTC 1 cut(s) 1205
PpsI GAGTC 1 cut(s) 1205
PscI ACATGT 1 cut(s) 925
PshAI GACNNNNGTC 1 cut(s) 173
Psp1406I AACGTT 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 696, 1278
PspGI CCWGG 2 cut(s) 696, 1278
PspN4I GGNNCC 7 cut(s) 531, 555, 568, 636, 826, 846, 1010
PspPI GGNCC 1 cut(s) 566
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 2 cut(s) 473, 797
PsuI RGATCY 4 cut(s) 553, 634, 664, 1008
PvuI CGATCG 1 cut(s) 1117
PvuII CAGCTG 1 cut(s) 1310
RsaI GTAC 2 cut(s) 374, 846
RsaNI GTAC 2 cut(s) 373, 845
SapI GCTCTTC 1 cut(s) 1186
SaqAI TTAA 7 cut(s) 140, 207, 215, 383, 444, 978, 996
SatI GCNGC 4 cut(s) 474, 876, 1377, 1390
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 1 cut(s) 1205
ScrFI CCNGG 3 cut(s) 440, 698, 1280
SduI GDGCHC 3 cut(s) 46, 466, 1087
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 3 cut(s) 501, 965, 1088
SmoI CTYRAG 3 cut(s) 501, 965, 1088
SsiI CCGC 3 cut(s) 828, 1000, 1387
SspMI CTAG 2 cut(s) 353, 864
StyD4I CCNGG 3 cut(s) 438, 696, 1278
StyI CCWWGG 4 cut(s) 183, 543, 820, 1369
TaaI ACNGT 4 cut(s) 175, 434, 793, 955
TaiI ACGT 2 cut(s) 324, 347
TaqI TCGA 2 cut(s) 405, 957
TfiI GAWTC 5 cut(s) 128, 263, 416, 647, 1035
Tru1I TTAA 7 cut(s) 140, 207, 215, 383, 444, 978, 996
Tru9I TTAA 7 cut(s) 140, 207, 215, 383, 444, 978, 996
TscAI CASTG 4 cut(s) 46, 439, 811, 1131
TseFI GTSAC 2 cut(s) 914, 1208
TseI GCWGC 4 cut(s) 473, 875, 1376, 1389
Tsp45I GTSAC 2 cut(s) 914, 1208
TspDTI ATGAA 4 cut(s) 429, 471, 758, 1281
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 4 cut(s) 46, 439, 811, 1131
Van91I CCANNNNNTGG 1 cut(s) 821
VneI GTGCAC 1 cut(s) 1083
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 5 cut(s) 332, 934, 983, 1055, 1268
XceI RCATGY 1 cut(s) 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 1268
XspI CTAG 2 cut(s) 353, 864
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.