Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

6081098 .. 6082073

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAACACCGGAACTTGCCTCTGTGGGCAACATTTCTCCACGTGGCGCTATAAAAACCACCTCACTCTCTCCCCAATTTTCTGCCTGCAACCCTAAAAGTTGTACTAAAACACACTCTCAACTCACAGCTTTCTCGGACGCAGCAGAACAAATGAACACGATCACCAGGCAACTCTCCGATTCAGCCGAAAAGCCCGAATCGAGTTCCGACACAAGCGTCACGACTCGAAGCCAGCTAACTTCGTTCTCCGACGAGGAGGTCATTTTGGCGTCCAGCACGCCGAAGAAGCGAGCGGGGAGGAGAGTTTTCAACGAGACAAGGCACCCGGTTTACAGAGGAGTGAGGAGGAGGAACAACGACAAGTGGGTGTGCGAAATGAGAGAACCGAACAAGAAGAAGTCGAGGATATGGCTCGGAACTTATCCAACGGCAGAGATGGCAGCTCGGGCGCATGACGTGGCGGCATTGGCCTTTAGAGGGAGGCTTGCCTGCCTCAATTTTGCAGACTCGGCATGGCGCCTGCCTGTTCCGGCTTCCACTGATTCAGTGGATATCAGGCGGGCGGCCGCGGAGGCTGCAGAGACATTCAGGCCAGCTGAGTTTGGCGGAGTGTCGGAAAGTGGGGATGATGAGAAGGAGAGCAAGAAGATGGAGGGGGAGAAGGATTGTGGAGGTGCGGAGCAAAGCGATTGTGGAGGTGCGGAGCAAAGCGACTGTGGAGGTGCGGAGCAAAGTGGCAGCTCGTTTTACTTGGATGAGGAGGAAATGTTCGCCATGCCAAGGTTGCTTGATAGTATGGCCGAAGGGCTTCTGCTCTCTCCACCTCGCCGTTCAGCTGGTGGCAACATGAACTGGGATGATATGGGAAGCAATGATGACGTCAATCTGTGGAGCTTCCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

303

Amino Acids

32.89

Weight (kDa)

5.26

Isoelectric Point (pI)

64.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	218, 260
AatII	GACGTC	1 cut(s)	885
AccB1I	GGYRCC	2 cut(s)	324, 519
AccBSI	CCGCTC	1 cut(s)	296
AccII	CGCG	1 cut(s)	572
AcoI	YGGCCR	2 cut(s)	567, 801
AcvI	CACGTG	1 cut(s)	44
AcyI	GRCGYC	3 cut(s)	272, 520, 882
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	480, 783
AgsI	TTSAA	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	167
AloI	GAACNNNNNNTCC	2 cut(s)	755, 787
AluBI	AGCT	7 cut(s)	131, 238, 446, 599, 744, 839, 897
AluI	AGCT	7 cut(s)	131, 238, 446, 599, 744, 839, 897
Alw26I	GTCTC	2 cut(s)	311, 578
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	4 cut(s)	471, 567, 593, 801
ApeKI	GCWGC	4 cut(s)	143, 443, 578, 741
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	3 cut(s)	50, 454, 522
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	447
BanI	GGYRCC	2 cut(s)	324, 519
BbrPI	CACGTG	1 cut(s)	44
BbvI	GCAGC	4 cut(s)	155, 455, 565, 753
BccI	CCATC	2 cut(s)	433, 646
BceAI	ACGGC	2 cut(s)	447, 816
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	311, 578
BfmI	CTRYAG	1 cut(s)	579
BfoI	RGCGCY	2 cut(s)	51, 523
BglI	GCCNNNNNGGC	1 cut(s)	575
BisI	GCNGC	7 cut(s)	144, 444, 465, 567, 570, 579, 742
BlsI	GCNGC	7 cut(s)	145, 445, 466, 568, 571, 580, 743
Bme1390I	CCNGG	2 cut(s)	169, 329
BmeT110I	CYCGRG	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	326, 521
BmrFI	CCNGG	2 cut(s)	169, 329
BmrI	ACTGGG	1 cut(s)	865
BmuI	ACTGGG	1 cut(s)	865
BpuMI	CCSGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	44
BsaHI	GRCGYC	3 cut(s)	272, 520, 882
BsaJI	CCNNGG	2 cut(s)	570, 782
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	2 cut(s)	480, 783
Bse1I	ACTGG	1 cut(s)	860
Bse3DI	GCAATG	1 cut(s)	880
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	570, 782
BseGI	GGATG	3 cut(s)	634, 763, 865
BseLI	CCNNNNNNNGG	2 cut(s)	480, 783
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	860
BseRI	GAGGAG	6 cut(s)	272, 316, 354, 361, 364, 776
BseX3I	CGGCCG	1 cut(s)	567
BseXI	GCAGC	4 cut(s)	155, 455, 565, 753
Bsh1236I	CGCG	1 cut(s)	572
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	4 cut(s)	473, 569, 595, 803
BshNI	GGYRCC	2 cut(s)	324, 519
BsiEI	CGRYCG	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	11, 329, 533
BslI	CCNNNNNNNGG	2 cut(s)	480, 783
BsmAI	GTCTC	2 cut(s)	311, 578
BsnI	GGCC	4 cut(s)	473, 569, 595, 803
BsoBI	CYCGRG	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	162
BspANI	GGCC	4 cut(s)	473, 569, 595, 803
BspCNI	CTCAG	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	326, 521
BspMAI	CTGCAG	1 cut(s)	583
BspT107I	GGYRCC	2 cut(s)	324, 519
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	880
BsrI	ACTGG	1 cut(s)	860
BssECI	CCNNGG	2 cut(s)	570, 782
BssMI	GATC	1 cut(s)	162
BssNI	GRCGYC	3 cut(s)	272, 520, 882
BssT1I	CCWWGG	1 cut(s)	782
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	719
BstACI	GRCGYC	3 cut(s)	272, 520, 882
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	9 cut(s)	88, 236, 281, 294, 489, 493, 524, 564, 597
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	3 cut(s)	634, 763, 865
BstFNI	CGCG	1 cut(s)	572
BstH2I	RGCGCY	2 cut(s)	51, 523
BstHHI	GCGC	3 cut(s)	50, 454, 522
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	2 cut(s)	311, 578
BstMBI	GATC	1 cut(s)	162
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	8 cut(s)	289, 440, 449, 470, 512, 575, 578, 787
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	167, 327
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	4 cut(s)	155, 455, 565, 753
BstZI	CGGCCG	1 cut(s)	567
BsuRI	GGCC	4 cut(s)	473, 569, 595, 803
BtgI	CCRYGG	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	634, 763, 865
BtsIMutI	CAGTG	2 cut(s)	540, 555
Cac8I	GCNNGC	9 cut(s)	88, 236, 281, 294, 489, 493, 524, 564, 597
CciNI	GCGGCCGC	1 cut(s)	567
CfoI	GCGC	3 cut(s)	50, 454, 522
Cfr42I	CCGCGG	1 cut(s)	573
CseI	GACGC	3 cut(s)	149, 208, 261
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	4 cut(s)	455, 516, 778, 850
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	600
DinI	GGCGCC	1 cut(s)	521
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DrdI	GACNNNNNNGTC	2 cut(s)	218, 260
DseDI	GACNNNNNNGTC	2 cut(s)	218, 260
EaeI	YGGCCR	2 cut(s)	567, 801
EagI	CGGCCG	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	624
EclXI	CGGCCG	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	782
Eco32I	GATATC	1 cut(s)	556
Eco52I	CGGCCG	1 cut(s)	567
Eco72I	CACGTG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	782
EgeI	GGCGCC	1 cut(s)	521
EheI	GGCGCC	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	4 cut(s)	458, 519, 781, 853
FaiI	YATR	8 cut(s)	53, 412, 456, 517, 779, 800, 851, 866
FatI	CATG	4 cut(s)	454, 515, 777, 849
FauI	CCCGC	2 cut(s)	289, 555
Fnu4HI	GCNGC	7 cut(s)	144, 444, 465, 567, 570, 579, 742
FokI	GGATG	3 cut(s)	641, 770, 872
Fsp4HI	GCNGC	7 cut(s)	144, 444, 465, 567, 570, 579, 742
GlaI	GCGC	3 cut(s)	49, 453, 521
GluI	GCNGC	7 cut(s)	144, 444, 465, 567, 570, 579, 742
HaeII	RGCGCY	2 cut(s)	51, 523
HaeIII	GGCC	4 cut(s)	473, 569, 595, 803
HapII	CCGG	3 cut(s)	11, 329, 533
HgaI	GACGC	3 cut(s)	149, 208, 261
HhaI	GCGC	3 cut(s)	50, 454, 522
Hin1I	GRCGYC	3 cut(s)	272, 520, 882
Hin1II	CATG	4 cut(s)	458, 519, 781, 853
Hin6I	GCGC	3 cut(s)	48, 452, 520
HinP1I	GCGC	3 cut(s)	48, 452, 520
HinfI	GANTC	5 cut(s)	182, 200, 226, 509, 545
HpaII	CCGG	3 cut(s)	11, 329, 533
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	6 cut(s)	139, 181, 211, 253, 419, 619
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	631, 658, 800
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	3 cut(s)	43, 459, 882
HpyCH4V	TGCA	3 cut(s)	90, 506, 581
HpyF10VI	GCNNNNNNNGC	8 cut(s)	289, 440, 449, 470, 512, 575, 578, 787
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	3 cut(s)	43, 459, 882
Hsp92I	GRCGYC	3 cut(s)	272, 520, 882
Hsp92II	CATG	4 cut(s)	458, 519, 781, 853
HspAI	GCGC	3 cut(s)	48, 452, 520
KasI	GGCGCC	1 cut(s)	519
KspI	CCGCGG	1 cut(s)	573
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	4 cut(s)	682, 706, 730, 894
Lsp1109I	GCAGC	4 cut(s)	155, 455, 565, 753
MaeII	ACGT	3 cut(s)	43, 459, 882
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	164
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	1 cut(s)	162
MboII	GAAGA	3 cut(s)	298, 409, 661
MluCI	AATT	2 cut(s)	77, 499
Mly113I	GGCGCC	1 cut(s)	520
MlyI	GAGTC	2 cut(s)	220, 503
MmeI	TCCRAC	4 cut(s)	234, 276, 452, 597
MroXI	GAANNNNTTC	1 cut(s)	810
MspA1I	CMGCKG	3 cut(s)	572, 599, 839
MspI	CCGG	3 cut(s)	11, 329, 533
MspR9I	CCNGG	2 cut(s)	169, 329
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	8 cut(s)	289, 440, 449, 470, 512, 575, 578, 787
NarI	GGCGCC	1 cut(s)	520
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	4 cut(s)	458, 519, 781, 853
NlaIV	GGNNCC	2 cut(s)	326, 521
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	220
NotI	GCGGCCGC	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	3 cut(s)	182, 200, 545
PkrI	GCNGC	7 cut(s)	145, 445, 466, 568, 571, 580, 743
PleI	GAGTC	2 cut(s)	220, 503
PluTI	GGCGCC	1 cut(s)	523
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	2 cut(s)	220, 503
Ppu21I	YACGTR	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	326, 521
PstI	CTGCAG	1 cut(s)	583
PvuII	CAGCTG	2 cut(s)	599, 839
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SacII	CCGCGG	1 cut(s)	573
SatI	GCNGC	7 cut(s)	144, 444, 465, 567, 570, 579, 742
Sau3AI	GATC	1 cut(s)	162
SchI	GAGTC	2 cut(s)	220, 503
ScrFI	CCNGG	2 cut(s)	169, 329
SfcI	CTRYAG	1 cut(s)	579
SfoI	GGCGCC	1 cut(s)	521
Sfr303I	CCGCGG	1 cut(s)	573
SgrBI	CCGCGG	1 cut(s)	573
Sse9I	AATT	2 cut(s)	77, 499
SspDI	GGCGCC	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	167, 327
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	3 cut(s)	46, 462, 885
TaqI	TCGA	3 cut(s)	203, 229, 404
TasI	AATT	2 cut(s)	77, 499
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	3 cut(s)	467, 569, 572
TfiI	GAWTC	3 cut(s)	182, 200, 545
TscAI	CASTG	2 cut(s)	547, 555
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	4 cut(s)	143, 443, 578, 741
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	170, 866
TspRI	CASTG	2 cut(s)	547, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmnI	GAANNNNTTC	1 cut(s)	810
ZraI	GACGTC	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.