Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

51227701 .. 51228605

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGATTACCGCCACCTGGCCCTCGCTCACACTGCGTGTGGTCGTGTACAGTCTCCGTAAGCACGGGTCCCACATGAAAATGTATATAAGCGCTTTCCTCAAACCAGTGTACTCAACAAAGAAAACCAAACTCACACTATCCCTACTCTCAGCTAAGAAAACCAGACCAGCTCTACCTCAGATGAATAGCTCCAATTACCAGCTCTCAGACTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCGTCACGACTTGCTGTTCGCCTCATTCCGACGAAAAGGTAATACTAGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCTGTCTACCGCGGAGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGCTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCAACTCTTGAGATGGCCGCTCGGGCACACGATGGGAAGCAGGCATGCCTCAATTTTGCTGATTCTGTGTGGCGGTTGCCCATTCCGGCTTCTAAAGACCAGCTTGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAATTCGGCGGCGTCTCAAGCAGCTGTGACGACAACGACAGGGAATATGAGGATGAGAATGTTGAGATGGACAACGAGAAGAAGAATGATGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGTGTCCACTGCTCTCTCCGCCTCGTCATTACTTGGACAGTACGAGCTGGGTAGACTATCAGGTGGAAAGCGAGTCAAATTTCAGCTTGTGGAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

294

Amino Acids

33.59

Weight (kDa)

8.42

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	129 - 171	1.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	465
AccBSI	CCGCTC	1 cut(s)	500
AccI	GTMKAC	2 cut(s)	390, 837
AccII	CGCG	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	3 cut(s)	462, 635, 862
AcyI	GRCGYC	1 cut(s)	645
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	4 cut(s)	47, 110, 479, 826
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	15, 465
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	5 cut(s)	56, 241, 368, 611, 652
Ama87I	CYCGRG	3 cut(s)	254, 470, 501
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	4 cut(s)	17, 338, 495, 597
ApeKI	GCWGC	2 cut(s)	611, 654
ApoI	RAATTY	3 cut(s)	462, 635, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	280, 312
AspLEI	GCGC	3 cut(s)	92, 408, 748
AspS9I	GGNCC	3 cut(s)	18, 66, 597
AvaI	CYCGRG	3 cut(s)	254, 470, 501
AvaII	GGWCC	1 cut(s)	66
AxyI	CCTNAGG	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	598, 666
BccI	CCATC	5 cut(s)	251, 487, 506, 694, 716
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	5 cut(s)	56, 241, 368, 611, 652
BfaI	CTAG	2 cut(s)	326, 774
BfoI	RGCGCY	2 cut(s)	93, 749
BglI	GCCNNNNNGGC	2 cut(s)	503, 608
BisI	GCNGC	6 cut(s)	498, 600, 603, 612, 643, 655
BlsI	GCNGC	6 cut(s)	499, 601, 604, 613, 644, 656
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	3 cut(s)	254, 470, 501
BmgT120I	GGNCC	3 cut(s)	18, 66, 597
BmiI	GGNNCC	3 cut(s)	67, 68, 444
BmrFI	CCNGG	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	509, 634
BsaHI	GRCGYC	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	394, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 465
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	104
Bse21I	CCTNAGG	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	2 cut(s)	394, 606
BseGI	GGATG	2 cut(s)	691, 742
BseLI	CCNNNNNNNGG	2 cut(s)	15, 465
BseMII	CTCAG	6 cut(s)	162, 191, 219, 451, 606, 621
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	2 cut(s)	598, 666
BseYI	CCCAGC	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	4 cut(s)	19, 340, 497, 599
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	3 cut(s)	254, 470, 501
BsiSI	CCGG	2 cut(s)	354, 566
BslFI	GGGAC	2 cut(s)	52, 487
BslI	CCNNNNNNNGG	2 cut(s)	15, 465
BsmAI	GTCTC	5 cut(s)	56, 241, 368, 611, 652
BsmBI	CGTCTC	1 cut(s)	652
BsmFI	GGGAC	2 cut(s)	52, 487
BsnI	GGCC	4 cut(s)	19, 340, 497, 599
BsoBI	CYCGRG	3 cut(s)	254, 470, 501
Bsp1286I	GDGCHC	2 cut(s)	438, 508
Bsp1407I	TGTACA	1 cut(s)	45
BspANI	GGCC	4 cut(s)	19, 340, 497, 599
BspCNI	CTCAG	6 cut(s)	161, 190, 218, 450, 607, 622
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	3 cut(s)	67, 68, 444
BspQI	GCTCTTC	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	394, 606
BssNI	GRCGYC	1 cut(s)	645
BssSI	CACGAG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	50, 824
Bst6I	CTCTTC	2 cut(s)	735, 755
BstACI	GRCGYC	1 cut(s)	645
BstAUI	TGTACA	1 cut(s)	45
BstC8I	GCNNGC	5 cut(s)	338, 351, 434, 522, 526
BstDEI	CTNAG	7 cut(s)	148, 153, 177, 205, 437, 615, 630
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	691, 742
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	2 cut(s)	93, 749
BstHHI	GCGC	3 cut(s)	92, 408, 748
BstMAI	GTCTC	5 cut(s)	56, 241, 368, 611, 652
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	2 cut(s)	528, 760
BstSCI	CCNGG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	598, 666
BstV2I	GAAGAC	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	19, 340, 497, 599
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	691, 742
BtsI	GCAGTG	2 cut(s)	29, 791
BtsIMutI	CAGTG	3 cut(s)	29, 111, 791
Cac8I	GCNNGC	5 cut(s)	338, 351, 434, 522, 526
CfoI	GCGC	3 cut(s)	92, 408, 748
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	18, 66, 597
Cfr42I	CCGCGG	1 cut(s)	397
CseI	GACGC	2 cut(s)	271, 634
Csp6I	GTAC	4 cut(s)	46, 109, 478, 825
CviAII	CATG	4 cut(s)	73, 525, 757, 778
CviQI	GTAC	4 cut(s)	46, 109, 478, 825
DdeI	CTNAG	7 cut(s)	148, 153, 177, 205, 437, 615, 630
DraIII	CACNNNGTG	1 cut(s)	35
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	2 cut(s)	735, 755
EarI	CTCTTC	2 cut(s)	735, 755
EciI	GGCGGA	2 cut(s)	792, 797
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	630
Eco88I	CYCGRG	3 cut(s)	254, 470, 501
EcoICRI	GAGCTC	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	652
FaeI	CATG	4 cut(s)	76, 528, 760, 781
FaiI	YATR	7 cut(s)	74, 84, 86, 526, 681, 758, 779
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	2 cut(s)	52, 487
FatI	CATG	4 cut(s)	72, 524, 756, 777
FblI	GTMKAC	2 cut(s)	390, 837
Fnu4HI	GCNGC	6 cut(s)	498, 600, 603, 612, 643, 655
FokI	GGATG	2 cut(s)	698, 749
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	6 cut(s)	498, 600, 603, 612, 643, 655
FspBI	CTAG	2 cut(s)	326, 774
GlaI	GCGC	3 cut(s)	91, 407, 747
GluI	GCNGC	6 cut(s)	498, 600, 603, 612, 643, 655
GsaI	CCCAGC	1 cut(s)	835
HaeII	RGCGCY	2 cut(s)	93, 749
HaeIII	GGCC	4 cut(s)	19, 340, 497, 599
HapII	CCGG	2 cut(s)	354, 566
HgaI	GACGC	2 cut(s)	271, 634
HhaI	GCGC	3 cut(s)	92, 408, 748
Hin1I	GRCGYC	1 cut(s)	645
Hin1II	CATG	4 cut(s)	76, 528, 760, 781
Hin6I	GCGC	3 cut(s)	90, 406, 746
HinP1I	GCGC	3 cut(s)	90, 406, 746
HinfI	GANTC	6 cut(s)	209, 230, 257, 376, 542, 857
HpaII	CCGG	2 cut(s)	354, 566
Hpy166II	GTNNAC	5 cut(s)	46, 109, 391, 791, 838
Hpy188I	TCNGA	5 cut(s)	180, 208, 274, 310, 884
Hpy188III	TCNNGA	3 cut(s)	286, 472, 488
Hpy8I	GTNNAC	5 cut(s)	46, 109, 391, 791, 838
Hpy99I	CGWCG	1 cut(s)	314
HpyCH4III	ACNGT	2 cut(s)	50, 824
HpyCH4IV	ACGT	1 cut(s)	476
HpyF3I	CTNAG	7 cut(s)	148, 153, 177, 205, 437, 615, 630
HpySE526I	ACGT	1 cut(s)	476
Hsp92I	GRCGYC	1 cut(s)	645
Hsp92II	CATG	4 cut(s)	76, 528, 760, 781
HspAI	GCGC	3 cut(s)	90, 406, 746
KflI	GGGWCCC	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	755
LmnI	GCTCC	3 cut(s)	194, 442, 876
Lsp1109I	GCAGC	2 cut(s)	598, 666
MaeI	CTAG	2 cut(s)	326, 774
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	283, 659
MbiI	CCGCTC	1 cut(s)	500
MboII	GAAGA	6 cut(s)	255, 355, 724, 727, 742, 752
MhlI	GDGCHC	2 cut(s)	438, 508
MluCI	AATT	5 cut(s)	193, 462, 532, 635, 862
MlyI	GAGTC	4 cut(s)	203, 266, 370, 866
MmeI	TCCRAC	2 cut(s)	237, 333
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	2 cut(s)	396, 657
MspI	CCGG	2 cut(s)	354, 566
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	396
NlaIII	CATG	4 cut(s)	76, 528, 760, 781
NlaIV	GGNNCC	3 cut(s)	67, 68, 444
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	2 cut(s)	283, 659
NspI	RCATGY	2 cut(s)	528, 760
PaeI	GCATGC	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	755
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 284, 338
PfeI	GAWTC	2 cut(s)	230, 542
PflMI	CCANNNNNTGG	1 cut(s)	465
PkrI	GCNGC	6 cut(s)	499, 601, 604, 613, 644, 656
PleI	GAGTC	4 cut(s)	203, 265, 370, 865
PpsI	GAGTC	4 cut(s)	203, 265, 370, 865
PpuMI	RGGWCCY	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	3 cut(s)	67, 68, 444
PspPI	GGNCC	3 cut(s)	18, 66, 597
PspPPI	RGGWCCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	657
RsaI	GTAC	4 cut(s)	47, 110, 479, 826
RsaNI	GTAC	4 cut(s)	46, 109, 478, 825
RseI	CAYNNNNRTG	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	438
SacII	CCGCGG	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	755
SatI	GCNGC	6 cut(s)	498, 600, 603, 612, 643, 655
Sau96I	GGNCC	3 cut(s)	18, 66, 597
SchI	GAGTC	4 cut(s)	203, 266, 370, 866
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	438, 508
Sfr303I	CCGCGG	1 cut(s)	397
SgrBI	CCGCGG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	488, 649
SmoI	CTYRAG	2 cut(s)	488, 649
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	5 cut(s)	193, 462, 532, 635, 862
SspMI	CTAG	2 cut(s)	326, 774
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	50, 824
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	5 cut(s)	228, 246, 332, 625, 753
TasI	AATT	5 cut(s)	193, 462, 532, 635, 862
TatI	WGTACW	2 cut(s)	45, 108
TauI	GCSGC	4 cut(s)	500, 602, 605, 645
TfiI	GAWTC	2 cut(s)	230, 542
TscAI	CASTG	3 cut(s)	36, 111, 798
TseFI	GTSAC	2 cut(s)	283, 659
TseI	GCWGC	2 cut(s)	611, 654
Tsp45I	GTSAC	2 cut(s)	283, 659
TspDTI	ATGAA	3 cut(s)	89, 197, 753
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	3 cut(s)	36, 111, 798
Van91I	CCANNNNNTGG	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	3 cut(s)	462, 635, 862
XceI	RCATGY	2 cut(s)	528, 760
XmiI	GTMKAC	2 cut(s)	390, 837
XspI	CTAG	2 cut(s)	326, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.