Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

51158229 .. 51159499

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAACTCCAACAACCAGCTCTCAGACTCCAACCACCAAAGCCTCGAGTCAGTCTCCTCCATCGACAAGCCCGAGACGTCCGCCTTATCTGACACCTGCAGCGTCACGACCAGCCGTTCAACTCATTCCGACGGAGAGGTGATACTAGCTTCGAGCAGACCGAAGAAGCGAGCCGGGAGGCGTGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGTGTGAGGCGGAGGAACAACAACAAGTGGGTGTGCGAGGTCAGGGAGCCCAACAAGAAGACCAGGATTTGGCTGGGGACGTACCCGACTGCCGAGATGGCAGCTCGGGCACACGACGTGGCTGCATTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCCGCATGGCGCTTGCCTGTTCCGGCTTCCAAAGACCAGCTCGACATCCGCAGGGCCGCCGCCGAGGCTGCCGAGACATTTCGGCCTGAGGAGTTCGGCGGCGTCACAAGCAGCTGCGATGACAACGAGAGGGAACATGAGAATGAGCAGGCTGCGACGGACAACGAGAAGAAGAATGAGGGCTTCTTCGAGGATGATGAGGCCGTCTTCGACATGCCCAGGTTGCTGACTAATATGGCGGAGGGTCTACTGCTCTCTCCCCCTCGTCGTTACTTGGACAGTATGAACCGGGGAGACGATGACGTGGAAAGCGGGTCCAATCTCAACCTGTGGAGCTACTCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

243

Amino Acids

27.28

Weight (kDa)

5.66

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	69 - 119	5.8e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
AatII	GACGTC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccI	GTMKAC	2 cut(s)	210, 631
AccII	CGCG	1 cut(s)	216
AcyI	GRCGYC	2 cut(s)	77, 486
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	285, 354
AgsI	TTSAA	2 cut(s)	120, 190
AjiI	CACGTC	2 cut(s)	334, 688
AjnI	CCWGG	2 cut(s)	278, 602
AluBI	AGCT	6 cut(s)	19, 149, 320, 424, 498, 720
AluI	AGCT	6 cut(s)	19, 149, 320, 424, 498, 720
Alw26I	GTCTC	5 cut(s)	58, 68, 188, 452, 672
Ama87I	CYCGRG	3 cut(s)	44, 71, 321
AoxI	GGCC	4 cut(s)	345, 438, 467, 585
ApeKI	GCWGC	7 cut(s)	99, 317, 338, 452, 495, 498, 536
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	346, 438, 699
AsuC2I	CCSGG	3 cut(s)	175, 206, 674
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	3 cut(s)	44, 71, 321
AvaII	GGWCC	1 cut(s)	699
AxyI	CCTNAGG	2 cut(s)	350, 471
BaeGI	GKGCMC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	281, 583
BbvI	GCAGC	7 cut(s)	111, 325, 329, 439, 485, 507, 523
BccI	CCATC	2 cut(s)	68, 307
BceAI	ACGGC	2 cut(s)	99, 572
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	2 cut(s)	280, 604
BcnI	CCSGG	3 cut(s)	175, 206, 674
BcoDI	GTCTC	5 cut(s)	58, 68, 188, 452, 672
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	104
BglI	GCCNNNNNGGC	2 cut(s)	314, 449
Bme1390I	CCNGG	5 cut(s)	175, 206, 280, 604, 674
Bme18I	GGWCC	1 cut(s)	699
BmeT110I	CYCGRG	3 cut(s)	44, 71, 321
BmgBI	CACGTC	2 cut(s)	334, 688
BmgT120I	GGNCC	3 cut(s)	346, 438, 699
BmiI	GGNNCC	2 cut(s)	264, 700
BmrFI	CCNGG	5 cut(s)	175, 206, 280, 604, 674
BpiI	GAAGAC	2 cut(s)	281, 583
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpuMI	CCSGG	3 cut(s)	175, 206, 674
BsaHI	GRCGYC	2 cut(s)	77, 486
BsaJI	CCNNGG	4 cut(s)	214, 447, 602, 673
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 354
Bse21I	CCTNAGG	2 cut(s)	350, 471
BseBI	CCWGG	2 cut(s)	280, 604
BseDI	CCNNGG	4 cut(s)	214, 447, 602, 673
BseGI	GGATG	2 cut(s)	429, 583
BseLI	CCNNNNNNNGG	2 cut(s)	285, 354
BseMII	CTCAG	2 cut(s)	36, 462
BseRI	GAGGAG	2 cut(s)	46, 488
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	7 cut(s)	111, 325, 329, 439, 485, 507, 523
BseYI	CCCAGC	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	4 cut(s)	347, 440, 469, 587
BsiHKCI	CYCGRG	3 cut(s)	44, 71, 321
BsiSI	CCGG	4 cut(s)	174, 206, 407, 673
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	285, 354
BsmAI	GTCTC	5 cut(s)	58, 68, 188, 452, 672
BsmBI	CGTCTC	2 cut(s)	68, 672
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	4 cut(s)	347, 440, 469, 587
BsoBI	CYCGRG	3 cut(s)	44, 71, 321
Bsp1286I	GDGCHC	2 cut(s)	267, 328
BspANI	GGCC	4 cut(s)	347, 440, 469, 587
BspCNI	CTCAG	2 cut(s)	35, 463
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	264, 700
BspMAI	CTGCAG	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	104
BssECI	CCNNGG	4 cut(s)	214, 447, 602, 673
BssNI	GRCGYC	2 cut(s)	77, 486
Bst2UI	CCWGG	2 cut(s)	280, 604
Bst4CI	ACNGT	1 cut(s)	665
BstACI	GRCGYC	2 cut(s)	77, 486
BstC8I	GCNNGC	5 cut(s)	171, 363, 367, 398, 534
BstDEI	CTNAG	3 cut(s)	22, 350, 471
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	429, 583
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstMAI	GTCTC	5 cut(s)	58, 68, 188, 452, 672
BstMWI	GCNNNNNNNGC	8 cut(s)	314, 323, 344, 386, 449, 452, 492, 607
BstNI	CCWGG	2 cut(s)	280, 604
BstNSI	RCATGY	2 cut(s)	369, 601
BstSCI	CCNGG	5 cut(s)	173, 204, 278, 602, 672
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	7 cut(s)	111, 325, 329, 439, 485, 507, 523
BstV2I	GAAGAC	2 cut(s)	281, 583
Bsu36I	CCTNAGG	2 cut(s)	350, 471
BsuRI	GGCC	4 cut(s)	347, 440, 469, 587
BtgI	CCRYGG	1 cut(s)	214
BtgZI	GCGATG	1 cut(s)	516
BtrI	CACGTC	2 cut(s)	334, 688
BtsCI	GGATG	2 cut(s)	429, 583
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	5 cut(s)	171, 363, 367, 398, 534
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	346, 438, 699
Cfr42I	CCGCGG	1 cut(s)	217
CseI	GACGC	2 cut(s)	91, 475
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	4 cut(s)	366, 390, 521, 598
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	22, 350, 471
DraIII	CACNNNGTG	1 cut(s)	334
EciI	GGCGGA	3 cut(s)	70, 241, 638
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	699
Eco81I	CCTNAGG	2 cut(s)	350, 471
Eco88I	CYCGRG	3 cut(s)	44, 71, 321
EcoRII	CCWGG	2 cut(s)	278, 602
EcoT38I	GRGCYC	1 cut(s)	267
Esp3I	CGTCTC	2 cut(s)	68, 672
FaeI	CATG	4 cut(s)	369, 393, 524, 601
FaiI	YATR	7 cut(s)	367, 391, 522, 599, 620, 668, 730
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	365, 389, 520, 597
FauI	CCCGC	1 cut(s)	689
FblI	GTMKAC	2 cut(s)	210, 631
FokI	GGATG	2 cut(s)	416, 590
FriOI	GRGCYC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	395
GsaI	CCCAGC	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	4 cut(s)	347, 440, 469, 587
HapII	CCGG	4 cut(s)	174, 206, 407, 673
HgaI	GACGC	2 cut(s)	91, 475
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	2 cut(s)	77, 486
Hin1II	CATG	4 cut(s)	369, 393, 524, 601
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HinfI	GANTC	4 cut(s)	26, 47, 196, 383
HpaII	CCGG	4 cut(s)	174, 206, 407, 673
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	211, 632
Hpy188I	TCNGA	3 cut(s)	25, 91, 130
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	211, 632
Hpy99I	CGWCG	4 cut(s)	134, 335, 544, 654
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	4 cut(s)	77, 296, 333, 687
HpyCH4V	TGCA	2 cut(s)	99, 341
HpyF10VI	GCNNNNNNNGC	8 cut(s)	314, 323, 344, 386, 449, 452, 492, 607
HpyF3I	CTNAG	3 cut(s)	22, 350, 471
HpySE526I	ACGT	4 cut(s)	77, 296, 333, 687
Hsp92I	GRCGYC	2 cut(s)	77, 486
Hsp92II	CATG	4 cut(s)	369, 393, 524, 601
HspAI	GCGC	1 cut(s)	394
KspI	CCGCGG	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	262, 717
Lsp1109I	GCAGC	7 cut(s)	111, 325, 329, 439, 485, 507, 523
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	4 cut(s)	77, 296, 333, 687
MaeIII	GTNAC	3 cut(s)	103, 487, 653
MboII	GAAGA	6 cut(s)	175, 286, 562, 565, 568, 583
MhlI	GDGCHC	2 cut(s)	267, 328
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	3 cut(s)	20, 56, 190
MmeI	TCCRAC	3 cut(s)	33, 54, 153
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	216, 498
MspI	CCGG	4 cut(s)	174, 206, 407, 673
MspR9I	CCNGG	5 cut(s)	175, 206, 280, 604, 674
MvaI	CCWGG	2 cut(s)	280, 604
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	8 cut(s)	314, 323, 344, 386, 449, 452, 492, 607
NciI	CCSGG	3 cut(s)	175, 206, 674
NlaIII	CATG	4 cut(s)	369, 393, 524, 601
NlaIV	GGNNCC	2 cut(s)	264, 700
NmeAIII	GCCGAG	3 cut(s)	334, 472, 481
NmuCI	GTSAC	2 cut(s)	103, 487
NspI	RCATGY	2 cut(s)	369, 601
PaeI	GCATGC	1 cut(s)	369
PaeR7I	CTCGAG	1 cut(s)	44
PaqCI	CACCTGC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 158
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	285
PleI	GAGTC	3 cut(s)	20, 55, 190
PpsI	GAGTC	3 cut(s)	20, 55, 190
Psp6I	CCWGG	2 cut(s)	278, 602
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	2 cut(s)	278, 602
PspN4I	GGNNCC	2 cut(s)	264, 700
PspPI	GGNCC	3 cut(s)	346, 438, 699
PspXI	VCTCGAGB	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	498
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	525
SacII	CCGCGG	1 cut(s)	217
Sau96I	GGNCC	3 cut(s)	346, 438, 699
SchI	GAGTC	3 cut(s)	20, 56, 190
ScrFI	CCNGG	5 cut(s)	175, 206, 280, 604, 674
SduI	GDGCHC	2 cut(s)	267, 328
SfcI	CTRYAG	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	44
Sfr303I	CCGCGG	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	699
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	5 cut(s)	173, 204, 278, 602, 672
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	4 cut(s)	80, 299, 336, 690
TaqI	TCGA	6 cut(s)	45, 63, 152, 426, 573, 594
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	373
TauI	GCSGC	3 cut(s)	443, 446, 486
TfiI	GAWTC	1 cut(s)	383
TseFI	GTSAC	2 cut(s)	103, 487
TseI	GCWGC	7 cut(s)	99, 317, 338, 452, 495, 498, 536
Tsp45I	GTSAC	2 cut(s)	103, 487
TspDTI	ATGAA	2 cut(s)	17, 683
TspGWI	ACGGA	2 cut(s)	147, 557
Van91I	CCANNNNNTGG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	699
XceI	RCATGY	2 cut(s)	369, 601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	2 cut(s)	210, 631
XspI	CTAG	1 cut(s)	146
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.