Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

38949988 .. 38950962

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002740

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAACCCAGATACTTCCTCAATGCAATTCAGCAGCTTCCAAAACTTAGCCTCATTACCGCCACCTGTCCCGCGCTCCCACTGCGTGTTGTCGTGTCCAGTCTACCGAAGAAAACCAAACCAGCTCTACCTCAGATGGACTCCAGTTACCAGCTCTCAGACTCCAACCAGCAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTGGTCTTCCTTATCTGACACTAGCATCACGACTAGCCGTTCACCTCATTCCGACGGAGCGGTGATACTAGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACATACCCGACTGTTGAGATGGCCGCTCGGGCACACGATGTGGCGGCGTTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCAGTGTGGAGGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCGGAGGAGTTCGGCGGCGTCTCGAGCAGCTGTGACGACAACGAGAGGGAATATGAGGATGAGAATGTTGAGATGGACAGCGAGAAGAAGAATGATGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTACTGACTAGCATGGCGGAGGGTCCACTACTCTCTCCGCCTCGTCATTACTTGGACAGTATGAACTGGGCGGACGATCAGGTGGAAAGCGAGTCAAATTTCAGCTTATGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

286

Amino Acids

32.24

Weight (kDa)

6.17

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	113 - 163	6.9e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccBSI	CCGCTC	2 cut(s)	269, 452
AccI	GTMKAC	2 cut(s)	103, 342
AccII	CGCG	2 cut(s)	74, 348
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	414, 835
AcyI	GRCGYC	1 cut(s)	618
AdeI	CACNNNGTG	2 cut(s)	86, 466
AfiI	CCNNNNNNNGG	2 cut(s)	417, 486
AgsI	TTSAA	1 cut(s)	322
AluBI	AGCT	8 cut(s)	37, 125, 154, 281, 556, 630, 843, 852
AluI	AGCT	8 cut(s)	37, 125, 154, 281, 556, 630, 843, 852
Alw26I	GTCTC	4 cut(s)	193, 320, 584, 625
Ama87I	CYCGRG	4 cut(s)	206, 422, 453, 622
AoxI	GGCC	4 cut(s)	290, 447, 477, 570
ApeKI	GCWGC	3 cut(s)	34, 584, 627
ApoI	RAATTY	2 cut(s)	414, 835
AspLEI	GCGC	3 cut(s)	76, 360, 721
AspS9I	GGNCC	3 cut(s)	478, 570, 761
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	243, 283
AvaI	CYCGRG	4 cut(s)	206, 422, 453, 622
AvaII	GGWCC	1 cut(s)	761
AxyI	CCTNAGG	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	46, 571, 639
BccI	CCATC	5 cut(s)	130, 203, 439, 667, 689
BceAI	ACGGC	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	4 cut(s)	193, 320, 584, 625
BfaI	CTAG	4 cut(s)	231, 243, 278, 747
BfoI	RGCGCY	1 cut(s)	722
BglI	GCCNNNNNGGC	2 cut(s)	455, 581
BisI	GCNGC	9 cut(s)	35, 349, 450, 471, 573, 576, 585, 616, 628
BlsI	GCNGC	9 cut(s)	36, 350, 451, 472, 574, 577, 586, 617, 629
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	761
BmeT110I	CYCGRG	4 cut(s)	206, 422, 453, 622
BmgT120I	GGNCC	3 cut(s)	478, 570, 761
BmiI	GGNNCC	2 cut(s)	396, 762
BmrFI	CCNGG	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	814
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	814
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	346, 579
BsaWI	WCCGGW	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 486
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	99, 144, 809
Bse21I	CCTNAGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	346, 579
BseGI	GGATG	2 cut(s)	664, 715
BseLI	CCNNNNNNNGG	2 cut(s)	417, 486
BseMII	CTCAG	3 cut(s)	146, 171, 579
BseNI	ACTGG	3 cut(s)	99, 144, 809
BseRI	GAGGAG	2 cut(s)	181, 620
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	3 cut(s)	46, 571, 639
Bsh1236I	CGCG	2 cut(s)	74, 348
Bsh1285I	CGRYCG	1 cut(s)	602
BshFI	GGCC	4 cut(s)	292, 449, 479, 572
BsiEI	CGRYCG	1 cut(s)	602
BsiHKCI	CYCGRG	4 cut(s)	206, 422, 453, 622
BsiSI	CCGG	4 cut(s)	306, 338, 539, 602
BslFI	GGGAC	2 cut(s)	54, 439
BslI	CCNNNNNNNGG	2 cut(s)	417, 486
BsmAI	GTCTC	4 cut(s)	193, 320, 584, 625
BsmBI	CGTCTC	1 cut(s)	625
BsmFI	GGGAC	2 cut(s)	54, 439
BsnI	GGCC	4 cut(s)	292, 449, 479, 572
BsoBI	CYCGRG	4 cut(s)	206, 422, 453, 622
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	814
BspANI	GGCC	4 cut(s)	292, 449, 479, 572
BspCNI	CTCAG	3 cut(s)	145, 170, 580
BspFNI	CGCG	2 cut(s)	74, 348
BspLI	GGNNCC	2 cut(s)	396, 762
BspQI	GCTCTTC	1 cut(s)	728
BsrBI	CCGCTC	2 cut(s)	269, 452
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	99, 144, 809
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	346, 579
BssMI	GATC	1 cut(s)	814
BssNI	GRCGYC	1 cut(s)	618
Bst4CI	ACNGT	2 cut(s)	439, 797
Bst6I	CTCTTC	2 cut(s)	708, 728
BstACI	GRCGYC	1 cut(s)	618
BstC8I	GCNNGC	4 cut(s)	290, 303, 495, 499
BstDEI	CTNAG	5 cut(s)	47, 132, 157, 482, 588
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	664, 715
BstFNI	CGCG	2 cut(s)	74, 348
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	3 cut(s)	76, 360, 721
BstKTI	GATC	1 cut(s)	817
BstMAI	GTCTC	4 cut(s)	193, 320, 584, 625
BstMBI	GATC	1 cut(s)	814
BstMCI	CGRYCG	1 cut(s)	602
BstMWI	GCNNNNNNNGC	9 cut(s)	82, 298, 357, 455, 476, 581, 584, 624, 849
BstNSI	RCATGY	2 cut(s)	501, 733
BstSCI	CCNGG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	2 cut(s)	74, 348
BstV1I	GCAGC	3 cut(s)	46, 571, 639
BstV2I	GAAGAC	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	482
BsuRI	GGCC	4 cut(s)	292, 449, 479, 572
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	664, 715
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 525
Cac8I	GCNNGC	4 cut(s)	290, 303, 495, 499
CfoI	GCGC	3 cut(s)	76, 360, 721
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	478, 570, 761
Cfr42I	CCGCGG	1 cut(s)	349
CseI	GACGC	1 cut(s)	607
CviAII	CATG	3 cut(s)	498, 730, 751
DdeI	CTNAG	5 cut(s)	47, 132, 157, 482, 588
DpnI	GATC	1 cut(s)	816
DpnII	GATC	1 cut(s)	814
DraIII	CACNNNGTG	2 cut(s)	86, 466
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	708, 728
EarI	CTCTTC	2 cut(s)	708, 728
EciI	GGCGGA	3 cut(s)	765, 770, 824
Eco47I	GGWCC	1 cut(s)	761
Eco81I	CCTNAGG	1 cut(s)	482
Eco88I	CYCGRG	4 cut(s)	206, 422, 453, 622
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	3 cut(s)	501, 733, 754
FaiI	YATR	7 cut(s)	430, 499, 654, 731, 752, 800, 847
FaqI	GGGAC	2 cut(s)	54, 439
FatI	CATG	3 cut(s)	497, 729, 750
FauI	CCCGC	1 cut(s)	79
FblI	GTMKAC	2 cut(s)	103, 342
Fnu4HI	GCNGC	9 cut(s)	35, 349, 450, 471, 573, 576, 585, 616, 628
FokI	GGATG	2 cut(s)	671, 722
Fsp4HI	GCNGC	9 cut(s)	35, 349, 450, 471, 573, 576, 585, 616, 628
FspBI	CTAG	4 cut(s)	231, 243, 278, 747
GlaI	GCGC	3 cut(s)	75, 359, 720
GluI	GCNGC	9 cut(s)	35, 349, 450, 471, 573, 576, 585, 616, 628
GsuI	CTGGAG	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	4 cut(s)	292, 449, 479, 572
HapII	CCGG	4 cut(s)	306, 338, 539, 602
HgaI	GACGC	1 cut(s)	607
HhaI	GCGC	3 cut(s)	76, 360, 721
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	3 cut(s)	501, 733, 754
Hin6I	GCGC	3 cut(s)	74, 358, 719
HinP1I	GCGC	3 cut(s)	74, 358, 719
HinfI	GANTC	6 cut(s)	140, 161, 182, 328, 515, 830
HpaII	CCGG	4 cut(s)	306, 338, 539, 602
HphI	GGTGA	2 cut(s)	243, 283
Hpy166II	GTNNAC	4 cut(s)	104, 251, 343, 764
Hpy188I	TCNGA	4 cut(s)	135, 160, 226, 262
Hpy188III	TCNNGA	3 cut(s)	238, 424, 622
Hpy8I	GTNNAC	4 cut(s)	104, 251, 343, 764
Hpy99I	CGWCG	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	439, 797
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	9 cut(s)	82, 298, 357, 455, 476, 581, 584, 624, 849
HpyF3I	CTNAG	5 cut(s)	47, 132, 157, 482, 588
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	3 cut(s)	501, 733, 754
HspAI	GCGC	3 cut(s)	74, 358, 719
KspI	CCGCGG	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	814
LguI	GCTCTTC	1 cut(s)	728
LmnI	GCTCC	4 cut(s)	81, 266, 394, 849
Lsp1109I	GCAGC	3 cut(s)	46, 571, 639
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	4 cut(s)	231, 243, 278, 747
MaeIII	GTNAC	2 cut(s)	146, 632
MalI	GATC	1 cut(s)	816
MbiI	CCGCTC	2 cut(s)	269, 452
MboI	GATC	1 cut(s)	814
MboII	GAAGA	7 cut(s)	121, 207, 307, 697, 700, 715, 725
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	4 cut(s)	27, 414, 505, 835
MlyI	GAGTC	4 cut(s)	134, 155, 322, 839
MmeI	TCCRAC	2 cut(s)	189, 285
MspA1I	CMGCKG	2 cut(s)	348, 630
MspI	CCGG	4 cut(s)	306, 338, 539, 602
MspR9I	CCNGG	1 cut(s)	338
MvnI	CGCG	2 cut(s)	74, 348
MwoI	GCNNNNNNNGC	9 cut(s)	82, 298, 357, 455, 476, 581, 584, 624, 849
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	814
NlaIII	CATG	3 cut(s)	501, 733, 754
NlaIV	GGNNCC	2 cut(s)	396, 762
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	632
NspI	RCATGY	2 cut(s)	501, 733
PaeI	GCATGC	1 cut(s)	501
PaeR7I	CTCGAG	1 cut(s)	622
PciSI	GCTCTTC	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 290
PfeI	GAWTC	2 cut(s)	182, 515
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	9 cut(s)	36, 350, 451, 472, 574, 577, 586, 617, 629
PleI	GAGTC	4 cut(s)	134, 155, 322, 838
PpsI	GAGTC	4 cut(s)	134, 155, 322, 838
PspN4I	GGNNCC	2 cut(s)	396, 762
PspPI	GGNCC	3 cut(s)	478, 570, 761
PvuII	CAGCTG	1 cut(s)	630
SacII	CCGCGG	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	728
SatI	GCNGC	9 cut(s)	35, 349, 450, 471, 573, 576, 585, 616, 628
Sau3AI	GATC	1 cut(s)	814
Sau96I	GGNCC	3 cut(s)	478, 570, 761
SchI	GAGTC	4 cut(s)	134, 155, 322, 839
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	349
SgrBI	CCGCGG	1 cut(s)	349
SinI	GGWCC	1 cut(s)	761
SlaI	CTCGAG	1 cut(s)	622
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
SphI	GCATGC	1 cut(s)	501
Sse9I	AATT	4 cut(s)	27, 414, 505, 835
SspMI	CTAG	4 cut(s)	231, 243, 278, 747
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	439, 797
TaqI	TCGA	7 cut(s)	180, 198, 284, 558, 598, 623, 726
TasI	AATT	4 cut(s)	27, 414, 505, 835
TauI	GCSGC	6 cut(s)	351, 452, 473, 575, 578, 618
TfiI	GAWTC	2 cut(s)	182, 515
TscAI	CASTG	2 cut(s)	87, 525
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	3 cut(s)	34, 584, 627
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	3 cut(s)	17, 726, 815
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	87, 525
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	2 cut(s)	414, 835
XceI	RCATGY	2 cut(s)	501, 733
XhoI	CTCGAG	1 cut(s)	622
XmiI	GTMKAC	2 cut(s)	103, 342
XspI	CTAG	4 cut(s)	231, 243, 278, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.