Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

16400802 .. 16401641

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG187000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTATATAAGCCCATTCCCCAAACCAGCAGTGTACTCAGCAAAGAAAACCAAACTCACACCATCTCTACCCTCAGCTAAGAAAACCAGACCAGCTCTACCTCAGATGAATAGCTCCAATTACCAGCTCTCAGATTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTCACCTTCCTTATCTGACACGAGCTTCACGACTCGCCGTTCACCTCATTCCGACGGAGCGATGATACTTGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCAACTCTTGAGATGGCCGCTCGGGCACACGATGTGGCGGCGTTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCCGTGTGGCGGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGATATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAGTTCGGCGGCGTCTCGAGCAGCTGTGACGACAACGAGAGGGAATATGAGGATTTGAATGTTGAGATGGACAGCGAGAAGAAGAATGATGGCTTGTACGAGGAGGAAGAGGCGCTCTTAGACATGCCCGGATTGCTGACTAGAATGGCGGAGGGTCCACTGCTCTCTCCGCCACGTCATTACTTGAACAGTATGAACTGGGCAGACGATCAGGTGGAAAGCGAGTCAAATTTCAGCTTGTGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

276

Amino Acids

31.19

Weight (kDa)

8.65

Isoelectric Point (pI)

66.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	104 - 154	6e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	390
AccBSI	CCGCTC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	387, 808
AcyI	GRCGYC	1 cut(s)	591
AdeI	CACNNNGTG	1 cut(s)	439
AfaI	GTAC	3 cut(s)	35, 404, 677
AfiI	CCNNNNNNNGG	3 cut(s)	390, 459, 498
AgsI	TTSAA	3 cut(s)	295, 637, 766
AjiI	CACGTC	1 cut(s)	755
AluBI	AGCT	9 cut(s)	77, 95, 114, 127, 207, 529, 603, 816, 825
AluI	AGCT	9 cut(s)	77, 95, 114, 127, 207, 529, 603, 816, 825
Alw26I	GTCTC	4 cut(s)	166, 293, 557, 598
Ama87I	CYCGRG	4 cut(s)	179, 395, 426, 595
AoxI	GGCC	4 cut(s)	263, 420, 450, 543
ApeKI	GCWGC	2 cut(s)	557, 600
ApoI	RAATTY	2 cut(s)	387, 808
AspLEI	GCGC	2 cut(s)	333, 694
AspS9I	GGNCC	3 cut(s)	451, 543, 734
AsuC2I	CCSGG	2 cut(s)	311, 708
AsuHPI	GGTGA	2 cut(s)	177, 216
AvaI	CYCGRG	4 cut(s)	179, 395, 426, 595
AvaII	GGWCC	1 cut(s)	734
AxyI	CCTNAGG	2 cut(s)	455, 576
BaeGI	GKGCMC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	544, 612
BccI	CCATC	5 cut(s)	70, 176, 412, 640, 662
BceAI	ACGGC	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	311, 708
BcoDI	GTCTC	4 cut(s)	166, 293, 557, 598
BfaI	CTAG	1 cut(s)	720
BfoI	RGCGCY	1 cut(s)	695
BglI	GCCNNNNNGGC	2 cut(s)	428, 554
BisI	GCNGC	8 cut(s)	322, 423, 444, 546, 549, 558, 589, 601
BlsI	GCNGC	8 cut(s)	323, 424, 445, 547, 550, 559, 590, 602
Bme1390I	CCNGG	2 cut(s)	311, 708
Bme18I	GGWCC	1 cut(s)	734
BmeT110I	CYCGRG	4 cut(s)	179, 395, 426, 595
BmgBI	CACGTC	1 cut(s)	755
BmgT120I	GGNCC	3 cut(s)	451, 543, 734
BmiI	GGNNCC	2 cut(s)	369, 735
BmrFI	CCNGG	2 cut(s)	311, 708
BmrI	ACTGGG	1 cut(s)	787
BmuI	ACTGGG	1 cut(s)	787
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	2 cut(s)	311, 708
BsaHI	GRCGYC	1 cut(s)	591
BsaJI	CCNNGG	2 cut(s)	319, 552
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 459, 498
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	782
Bse21I	CCTNAGG	2 cut(s)	455, 576
BseDI	CCNNGG	2 cut(s)	319, 552
BseLI	CCNNNNNNNGG	3 cut(s)	390, 459, 498
BseMII	CTCAG	6 cut(s)	51, 87, 116, 144, 552, 567
BseNI	ACTGG	1 cut(s)	782
BseRI	GAGGAG	3 cut(s)	154, 593, 695
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	544, 612
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	265, 422, 452, 545
BsiHKCI	CYCGRG	4 cut(s)	179, 395, 426, 595
BsiSI	CCGG	4 cut(s)	279, 311, 512, 708
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	390, 459, 498
BsmAI	GTCTC	4 cut(s)	166, 293, 557, 598
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	4 cut(s)	265, 422, 452, 545
BsoBI	CYCGRG	4 cut(s)	179, 395, 426, 595
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	787
BspANI	GGCC	4 cut(s)	265, 422, 452, 545
BspCNI	CTCAG	6 cut(s)	50, 86, 115, 143, 553, 568
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	369, 735
BsrBI	CCGCTC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	782
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	319, 552
BssMI	GATC	1 cut(s)	787
BssNI	GRCGYC	1 cut(s)	591
BssSI	CACGAG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	770
Bst6I	CTCTTC	1 cut(s)	681
BstACI	GRCGYC	1 cut(s)	591
BstC8I	GCNNGC	4 cut(s)	263, 276, 468, 472
BstDEI	CTNAG	9 cut(s)	37, 73, 78, 102, 130, 455, 561, 576, 697
BstDSI	CCRYGG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	2 cut(s)	333, 694
BstKTI	GATC	1 cut(s)	790
BstMAI	GTCTC	4 cut(s)	166, 293, 557, 598
BstMBI	GATC	1 cut(s)	787
BstNSI	RCATGY	2 cut(s)	474, 706
BstSCI	CCNGG	2 cut(s)	309, 706
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	544, 612
Bsu36I	CCTNAGG	2 cut(s)	455, 576
BsuRI	GGCC	4 cut(s)	265, 422, 452, 545
BtgI	CCRYGG	1 cut(s)	319
BtgZI	GCGATG	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	755
BtsI	GCAGTG	2 cut(s)	36, 737
BtsIMutI	CAGTG	2 cut(s)	36, 737
Cac8I	GCNNGC	4 cut(s)	263, 276, 468, 472
CfoI	GCGC	2 cut(s)	333, 694
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	3 cut(s)	451, 543, 734
Cfr42I	CCGCGG	1 cut(s)	322
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	3 cut(s)	34, 403, 676
CviAII	CATG	2 cut(s)	471, 703
CviQI	GTAC	3 cut(s)	34, 403, 676
DdeI	CTNAG	9 cut(s)	37, 73, 78, 102, 130, 455, 561, 576, 697
DpnI	GATC	1 cut(s)	789
DpnII	GATC	1 cut(s)	787
DraIII	CACNNNGTG	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
EciI	GGCGGA	2 cut(s)	738, 743
Eco47I	GGWCC	1 cut(s)	734
Eco81I	CCTNAGG	2 cut(s)	455, 576
Eco88I	CYCGRG	4 cut(s)	179, 395, 426, 595
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	2 cut(s)	474, 706
FaiI	YATR	6 cut(s)	6, 8, 472, 627, 704, 773
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	2 cut(s)	470, 702
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	8 cut(s)	322, 423, 444, 546, 549, 558, 589, 601
Fsp4HI	GCNGC	8 cut(s)	322, 423, 444, 546, 549, 558, 589, 601
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	2 cut(s)	332, 693
GluI	GCNGC	8 cut(s)	322, 423, 444, 546, 549, 558, 589, 601
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	4 cut(s)	265, 422, 452, 545
HapII	CCGG	4 cut(s)	279, 311, 512, 708
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	2 cut(s)	333, 694
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	2 cut(s)	474, 706
Hin6I	GCGC	2 cut(s)	331, 692
HinP1I	GCGC	2 cut(s)	331, 692
HinfI	GANTC	7 cut(s)	134, 155, 182, 214, 301, 488, 803
HpaII	CCGG	4 cut(s)	279, 311, 512, 708
HphI	GGTGA	2 cut(s)	177, 216
Hpy166II	GTNNAC	4 cut(s)	34, 224, 316, 737
Hpy188I	TCNGA	4 cut(s)	105, 133, 199, 235
Hpy188III	TCNNGA	4 cut(s)	211, 397, 413, 595
Hpy8I	GTNNAC	4 cut(s)	34, 224, 316, 737
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	770
HpyCH4IV	ACGT	2 cut(s)	401, 754
HpyF3I	CTNAG	9 cut(s)	37, 73, 78, 102, 130, 455, 561, 576, 697
HpySE526I	ACGT	2 cut(s)	401, 754
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	2 cut(s)	474, 706
HspAI	GCGC	2 cut(s)	331, 692
KspI	CCGCGG	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	787
LmnI	GCTCC	4 cut(s)	119, 239, 367, 822
Lsp1109I	GCAGC	2 cut(s)	544, 612
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	2 cut(s)	401, 754
MaeIII	GTNAC	2 cut(s)	183, 605
MalI	GATC	1 cut(s)	789
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	1 cut(s)	787
MboII	GAAGA	4 cut(s)	280, 670, 673, 698
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	4 cut(s)	118, 387, 478, 808
MlyI	GAGTC	4 cut(s)	191, 208, 295, 812
MmeI	TCCRAC	2 cut(s)	162, 258
MspA1I	CMGCKG	2 cut(s)	321, 603
MspI	CCGG	4 cut(s)	279, 311, 512, 708
MspR9I	CCNGG	2 cut(s)	311, 708
MvnI	CGCG	1 cut(s)	321
NciI	CCSGG	2 cut(s)	311, 708
NdeII	GATC	1 cut(s)	787
NlaIII	CATG	2 cut(s)	474, 706
NlaIV	GGNNCC	2 cut(s)	369, 735
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	183, 605
NspI	RCATGY	2 cut(s)	474, 706
PaeI	GCATGC	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	4 cut(s)	177, 209, 263, 489
PfeI	GAWTC	3 cut(s)	134, 155, 488
PflMI	CCANNNNNTGG	1 cut(s)	390
PkrI	GCNGC	8 cut(s)	323, 424, 445, 547, 550, 559, 590, 602
PleI	GAGTC	4 cut(s)	190, 208, 295, 811
PpsI	GAGTC	4 cut(s)	190, 208, 295, 811
PspN4I	GGNNCC	2 cut(s)	369, 735
PspPI	GGNCC	3 cut(s)	451, 543, 734
PvuII	CAGCTG	1 cut(s)	603
RsaI	GTAC	3 cut(s)	35, 404, 677
RsaNI	GTAC	3 cut(s)	34, 403, 676
SacII	CCGCGG	1 cut(s)	322
SatI	GCNGC	8 cut(s)	322, 423, 444, 546, 549, 558, 589, 601
Sau3AI	GATC	1 cut(s)	787
Sau96I	GGNCC	3 cut(s)	451, 543, 734
SchI	GAGTC	4 cut(s)	191, 208, 295, 812
ScrFI	CCNGG	2 cut(s)	311, 708
SduI	GDGCHC	1 cut(s)	433
Sfr274I	CTCGAG	1 cut(s)	595
Sfr303I	CCGCGG	1 cut(s)	322
SgrBI	CCGCGG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	734
SlaI	CTCGAG	1 cut(s)	595
SmlI	CTYRAG	2 cut(s)	413, 595
SmoI	CTYRAG	2 cut(s)	413, 595
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	4 cut(s)	118, 387, 478, 808
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	2 cut(s)	309, 706
TaaI	ACNGT	1 cut(s)	770
TaiI	ACGT	2 cut(s)	404, 757
TaqI	TCGA	6 cut(s)	153, 171, 257, 531, 571, 596
TasI	AATT	4 cut(s)	118, 387, 478, 808
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	6 cut(s)	324, 425, 446, 548, 551, 591
TfiI	GAWTC	3 cut(s)	134, 155, 488
TscAI	CASTG	2 cut(s)	36, 744
TseFI	GTSAC	2 cut(s)	183, 605
TseI	GCWGC	2 cut(s)	557, 600
Tsp45I	GTSAC	2 cut(s)	183, 605
TspDTI	ATGAA	2 cut(s)	122, 788
TspGWI	ACGGA	2 cut(s)	252, 481
TspRI	CASTG	2 cut(s)	36, 744
Van91I	CCANNNNNTGG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	2 cut(s)	387, 808
XceI	RCATGY	2 cut(s)	474, 706
XhoI	CTCGAG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.