Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007820.1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

8294 .. 8881

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007820.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgatacttgcttcgagcaggccgaagaagcgagccggtaggcgagtgttcaaggagactcgccacccggtctaccgcggcgtgaggcgcaggaacaataacaagtgggtgtgcgaggtcagggagccgaacaaaaagaccagaatttggctcgggacttacccaactcttgagatggccgctcgggcacacgatgtggcggcgttggcccttagggggaagcaggcatgcctcaattttgctgattccgtgtggcggttgcccattccggcttctaaagaccagctcgacattcgcagggccgccgccgaggctgctgagacatttcgacctgaggagttcggcggcgtctcgagcagctgtgacgacaacgagagggaatatgaggatgagaatgttgagatggacaacgagaagaagaatgatggcttctacgaggataaagaggcgctcttcgacatgcccagattgctgactagcatggcggagggtccactgctctctccgccacgtcattacttggacagtatgaactgggcagacgatcaggtggacagcgaatcaaatttcagcttgtggagcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

195

Amino Acids

22.52

Weight (kDa)

6.01

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccBSI	CCGCTC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	144, 565
AcyI	GRCGYC	1 cut(s)	348
AdeI	CACNNNGTG	1 cut(s)	196
AfiI	CCNNNNNNNGG	3 cut(s)	147, 216, 255
AgsI	TTSAA	1 cut(s)	52
AjiI	CACGTC	1 cut(s)	512
AluBI	AGCT	4 cut(s)	286, 360, 573, 582
AluI	AGCT	4 cut(s)	286, 360, 573, 582
Alw26I	GTCTC	3 cut(s)	50, 314, 355
Ama87I	CYCGRG	3 cut(s)	152, 183, 352
AoxI	GGCC	4 cut(s)	20, 177, 207, 300
ApeKI	GCWGC	2 cut(s)	314, 357
ApoI	RAATTY	2 cut(s)	144, 565
AspLEI	GCGC	2 cut(s)	90, 451
AspS9I	GGNCC	3 cut(s)	208, 300, 491
AsuC2I	CCSGG	1 cut(s)	68
AvaI	CYCGRG	3 cut(s)	152, 183, 352
AvaII	GGWCC	1 cut(s)	491
AxyI	CCTNAGG	2 cut(s)	212, 333
BaeGI	GKGCMC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	301, 369
BccI	CCATC	3 cut(s)	169, 397, 419
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	3 cut(s)	50, 314, 355
BfaI	CTAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	452
BglI	GCCNNNNNGGC	2 cut(s)	185, 311
BisI	GCNGC	8 cut(s)	79, 180, 201, 303, 306, 315, 346, 358
BlsI	GCNGC	8 cut(s)	80, 181, 202, 304, 307, 316, 347, 359
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	3 cut(s)	152, 183, 352
BmgBI	CACGTC	1 cut(s)	512
BmgT120I	GGNCC	3 cut(s)	208, 300, 491
BmiI	GGNNCC	2 cut(s)	126, 492
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	544
BmuI	ACTGGG	1 cut(s)	544
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	76, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 216, 255
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	539
Bse21I	CCTNAGG	2 cut(s)	212, 333
BseDI	CCNNGG	2 cut(s)	76, 309
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	3 cut(s)	147, 216, 255
BseMII	CTCAG	2 cut(s)	309, 324
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	301, 369
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	22, 179, 209, 302
BsiHKCI	CYCGRG	3 cut(s)	152, 183, 352
BsiSI	CCGG	3 cut(s)	36, 68, 269
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	147, 216, 255
BsmAI	GTCTC	3 cut(s)	50, 314, 355
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	22, 179, 209, 302
BsoBI	CYCGRG	3 cut(s)	152, 183, 352
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	544
BspANI	GGCC	4 cut(s)	22, 179, 209, 302
BspCNI	CTCAG	2 cut(s)	310, 325
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	126, 492
BspQI	GCTCTTC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	76, 309
BssMI	GATC	1 cut(s)	544
BssNI	GRCGYC	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	1 cut(s)	458
BstACI	GRCGYC	1 cut(s)	348
BstC8I	GCNNGC	4 cut(s)	20, 33, 225, 229
BstDEI	CTNAG	3 cut(s)	212, 318, 333
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	90, 451
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	3 cut(s)	50, 314, 355
BstMBI	GATC	1 cut(s)	544
BstNSI	RCATGY	2 cut(s)	231, 463
BstSCI	CCNGG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	301, 369
Bsu36I	CCTNAGG	2 cut(s)	212, 333
BsuRI	GGCC	4 cut(s)	22, 179, 209, 302
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	494
Cac8I	GCNNGC	4 cut(s)	20, 33, 225, 229
CfoI	GCGC	2 cut(s)	90, 451
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	208, 300, 491
Cfr42I	CCGCGG	1 cut(s)	79
CseI	GACGC	1 cut(s)	337
CviAII	CATG	3 cut(s)	228, 460, 481
DdeI	CTNAG	3 cut(s)	212, 318, 333
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
DraIII	CACNNNGTG	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EciI	GGCGGA	2 cut(s)	495, 500
Eco47I	GGWCC	1 cut(s)	491
Eco81I	CCTNAGG	2 cut(s)	212, 333
Eco88I	CYCGRG	3 cut(s)	152, 183, 352
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	3 cut(s)	231, 463, 484
FaiI	YATR	5 cut(s)	229, 384, 461, 482, 530
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	227, 459, 480
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	8 cut(s)	79, 180, 201, 303, 306, 315, 346, 358
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	8 cut(s)	79, 180, 201, 303, 306, 315, 346, 358
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	2 cut(s)	89, 450
GluI	GCNGC	8 cut(s)	79, 180, 201, 303, 306, 315, 346, 358
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	4 cut(s)	22, 179, 209, 302
HapII	CCGG	3 cut(s)	36, 68, 269
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	2 cut(s)	90, 451
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	231, 463, 484
Hin6I	GCGC	2 cut(s)	88, 449
HinP1I	GCGC	2 cut(s)	88, 449
HinfI	GANTC	3 cut(s)	58, 245, 560
HpaII	CCGG	3 cut(s)	36, 68, 269
Hpy166II	GTNNAC	3 cut(s)	73, 494, 553
Hpy188III	TCNNGA	3 cut(s)	154, 170, 352
Hpy8I	GTNNAC	3 cut(s)	73, 494, 553
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	1 cut(s)	511
HpyF3I	CTNAG	3 cut(s)	212, 318, 333
HpySE526I	ACGT	1 cut(s)	511
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	231, 463, 484
HspAI	GCGC	2 cut(s)	88, 449
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	544
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	124, 579
Lsp1109I	GCAGC	2 cut(s)	301, 369
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	1 cut(s)	546
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	1 cut(s)	544
MboII	GAAGA	4 cut(s)	37, 427, 430, 445
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	144, 235, 565
MlyI	GAGTC	1 cut(s)	52
MspA1I	CMGCKG	2 cut(s)	78, 360
MspI	CCGG	3 cut(s)	36, 68, 269
MspR9I	CCNGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	78
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	544
NlaIII	CATG	3 cut(s)	231, 463, 484
NlaIV	GGNNCC	2 cut(s)	126, 492
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	2 cut(s)	231, 463
PaeI	GCATGC	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	245, 560
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	8 cut(s)	80, 181, 202, 304, 307, 316, 347, 359
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	126, 492
PspPI	GGNCC	3 cut(s)	208, 300, 491
PvuII	CAGCTG	1 cut(s)	360
SacII	CCGCGG	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	458
SatI	GCNGC	8 cut(s)	79, 180, 201, 303, 306, 315, 346, 358
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	3 cut(s)	208, 300, 491
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	8 cut(s)	120, 288, 334, 362, 514, 552, 575, 584
Sfr274I	CTCGAG	1 cut(s)	352
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	491
SlaI	CTCGAG	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	170, 352
SmoI	CTYRAG	2 cut(s)	170, 352
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	3 cut(s)	144, 235, 565
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	5 cut(s)	14, 288, 328, 353, 456
TasI	AATT	3 cut(s)	144, 235, 565
TauI	GCSGC	6 cut(s)	81, 182, 203, 305, 308, 348
TfiI	GAWTC	2 cut(s)	245, 560
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	314, 357
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	545
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	501
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	2 cut(s)	144, 565
XceI	RCATGY	2 cut(s)	231, 463
XhoI	CTCGAG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.