Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

4289883 .. 4291017

Gene Structure 1135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAATAATGATGATATTATTCTGGCGGAGATGAGGCCTAAGAAGCGTGCGGGAAGGAGAGTGTTTAAGGAGACACGTCACCCAGTTTACAGAGGCATAAGGCGGAGGAACGGTGACAAATGGGTCTGCGAAGTCAGAGAACCGACGCACCAACGCCGCATTTGGCTCGGGACTTATCCCACAGCAGATATGGCAGCGCGTGCACACGACGTGGCGGTTTTAGCTCTGCGTGGGAGATCCGCATGTTTGAATTTCGCCGACTCCGCTTGGCGGCTTCCGGTGCCGGAATCCAATGATCCGGATGTGATAAGAAGAGTTGCGGCGGAAGCTGCGGAGATGTTTAGGCCGGTGGATTTAGAAAGTGGAATTACGGTTTTGCCTTGTGCGGGAGATGATGTGGATTTGGGTTTTGGTTCGGGTTCCGGCTCTGGTTCGGGATCGGAGGAGAGGAATTCTTCTTCGTATGGATTTGGAGACTACGAAGAAGTCTCAACGACGATGATGAGACTCGCGGAGGGGCCACTAATGTCGCCGCCGCGATCGTATATGGAAGACATGACTCCTACTAATGTTTACACGGAAGAAGAGATGTGTTATGAAGATATGTCATTGTGGAGTTACAGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

209

Amino Acids

23.62

Weight (kDa)

5.24

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	28 - 78	2.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	3 cut(s)	199, 512, 538
AccIII	TCCGGA	1 cut(s)	298
AclWI	GGATC	3 cut(s)	231, 290, 445
AcsI	RAATTY	2 cut(s)	250, 451
AdeI	CACNNNGTG	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	270, 386
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	250
AjiI	CACGTC	2 cut(s)	77, 211
AluBI	AGCT	2 cut(s)	224, 329
AluI	AGCT	2 cut(s)	224, 329
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	4 cut(s)	65, 468, 493, 499
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	231, 290, 445
Ama87I	CYCGRG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	3 cut(s)	35, 344, 518
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	194, 329
ApoI	RAATTY	2 cut(s)	250, 451
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	71, 125
AvaI	CYCGRG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	206, 316
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcoDI	GTCTC	4 cut(s)	65, 468, 493, 499
BisI	GCNGC	7 cut(s)	157, 195, 272, 321, 330, 533, 536
BlsI	GCNGC	7 cut(s)	158, 196, 273, 322, 331, 534, 537
BmeT110I	CYCGRG	1 cut(s)	167
BmgBI	CACGTC	2 cut(s)	77, 211
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	3 cut(s)	282, 421, 519
BmrI	ACTGGG	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	558
BsaWI	WCCGGW	2 cut(s)	277, 298
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 386
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	298
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	270, 386
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	206, 316
Bsh1236I	CGCG	3 cut(s)	199, 512, 538
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	3 cut(s)	37, 346, 520
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	5 cut(s)	278, 284, 299, 347, 423
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	270, 386
BsmAI	GTCTC	4 cut(s)	65, 468, 493, 499
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	3 cut(s)	37, 346, 520
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	236, 295, 437, 539
BspANI	GGCC	3 cut(s)	37, 346, 520
BspEI	TCCGGA	1 cut(s)	298
BspFNI	CGCG	3 cut(s)	199, 512, 538
BspLI	GGNNCC	3 cut(s)	282, 421, 519
BspPI	GGATC	3 cut(s)	231, 290, 445
BspT107I	GGYRCC	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	346
BssMI	GATC	4 cut(s)	236, 295, 437, 539
Bst4CI	ACNGT	2 cut(s)	113, 373
Bst6I	CTCTTC	2 cut(s)	307, 579
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	48, 201
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	3 cut(s)	199, 512, 538
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	239, 298, 440, 542
BstMAI	GTCTC	4 cut(s)	65, 468, 493, 499
BstMBI	GATC	4 cut(s)	236, 295, 437, 539
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	8 cut(s)	43, 191, 200, 221, 263, 280, 326, 329
BstNSI	RCATGY	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	3 cut(s)	199, 512, 538
BstV1I	GCAGC	2 cut(s)	206, 316
BstV2I	GAAGAC	1 cut(s)	558
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	3 cut(s)	37, 346, 520
BtrI	CACGTC	2 cut(s)	77, 211
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	48, 201
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	518
CseI	GACGC	1 cut(s)	154
CviAII	CATG	2 cut(s)	243, 556
CviJI	RGCY	8 cut(s)	37, 166, 224, 274, 329, 346, 426, 520
CviKI_1	RGCY	8 cut(s)	37, 166, 224, 274, 329, 346, 426, 520
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	4 cut(s)	238, 297, 439, 541
DpnII	GATC	4 cut(s)	236, 295, 437, 539
DraIII	CACNNNGTG	1 cut(s)	211
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	2 cut(s)	307, 579
EarI	CTCTTC	2 cut(s)	307, 579
EciI	GGCGGA	3 cut(s)	41, 118, 338
Eco147I	AGGCCT	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	451
FaeI	CATG	2 cut(s)	246, 559
FaiI	YATR	9 cut(s)	98, 191, 244, 465, 546, 548, 557, 597, 605
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	242, 555
FauI	CCCGC	2 cut(s)	43, 379
Fnu4HI	GCNGC	7 cut(s)	157, 195, 272, 321, 330, 533, 536
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	7 cut(s)	157, 195, 272, 321, 330, 533, 536
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	7 cut(s)	157, 195, 272, 321, 330, 533, 536
HaeIII	GGCC	3 cut(s)	37, 346, 520
HapII	CCGG	5 cut(s)	278, 284, 299, 347, 423
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	246, 559
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	4 cut(s)	260, 287, 507, 559
HpaII	CCGG	5 cut(s)	278, 284, 299, 347, 423
HphI	GGTGA	2 cut(s)	71, 125
Hpy166II	GTNNAC	3 cut(s)	88, 203, 574
Hpy188I	TCNGA	2 cut(s)	137, 442
Hpy188III	TCNNGA	3 cut(s)	169, 299, 435
Hpy8I	GTNNAC	3 cut(s)	88, 203, 574
Hpy99I	CGWCG	3 cut(s)	148, 212, 499
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	2 cut(s)	113, 373
HpyCH4IV	ACGT	2 cut(s)	76, 210
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	8 cut(s)	43, 191, 200, 221, 263, 280, 326, 329
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	2 cut(s)	76, 210
Hsp92II	CATG	2 cut(s)	246, 559
HspAI	GCGC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	236, 295, 437, 539
LpnPI	CCDG	8 cut(s)	8, 96, 291, 297, 312, 360, 414, 436
Lsp1109I	GCAGC	2 cut(s)	206, 316
MaeII	ACGT	2 cut(s)	76, 210
MaeIII	GTNAC	3 cut(s)	77, 113, 617
MalI	GATC	4 cut(s)	238, 297, 439, 541
MboI	GATC	4 cut(s)	236, 295, 437, 539
MboII	GAAGA	8 cut(s)	324, 447, 450, 494, 563, 593, 596, 611
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	3 cut(s)	250, 366, 451
MlyI	GAGTC	3 cut(s)	254, 501, 553
MnlI	CCTC	6 cut(s)	27, 86, 99, 436, 441, 508
MroI	TCCGGA	1 cut(s)	298
MseI	TTAA	2 cut(s)	66, 628
MspI	CCGG	5 cut(s)	278, 284, 299, 347, 423
MvnI	CGCG	3 cut(s)	199, 512, 538
MwoI	GCNNNNNNNGC	8 cut(s)	43, 191, 200, 221, 263, 280, 326, 329
NdeII	GATC	4 cut(s)	236, 295, 437, 539
NlaIII	CATG	2 cut(s)	246, 559
NlaIV	GGNNCC	3 cut(s)	282, 421, 519
NmuCI	GTSAC	2 cut(s)	77, 113
NspI	RCATGY	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	7 cut(s)	158, 196, 273, 322, 331, 534, 537
Ple19I	CGATCG	1 cut(s)	542
PleI	GAGTC	3 cut(s)	254, 501, 553
PpsI	GAGTC	3 cut(s)	254, 501, 553
PspN4I	GGNNCC	3 cut(s)	282, 421, 519
PspPI	GGNCC	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	236
PvuI	CGATCG	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	66, 628
SatI	GCNGC	7 cut(s)	157, 195, 272, 321, 330, 533, 536
Sau3AI	GATC	4 cut(s)	236, 295, 437, 539
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	3 cut(s)	254, 501, 553
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	4 cut(s)	79, 213, 226, 331
Sse9I	AATT	3 cut(s)	250, 366, 451
SseBI	AGGCCT	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	113, 373
TaiI	ACGT	2 cut(s)	79, 213
TasI	AATT	3 cut(s)	250, 366, 451
TauI	GCSGC	5 cut(s)	159, 274, 323, 535, 538
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	66, 628
Tru9I	TTAA	2 cut(s)	66, 628
TseFI	GTSAC	2 cut(s)	77, 113
TseI	GCWGC	2 cut(s)	194, 329
Tsp45I	GTSAC	2 cut(s)	77, 113
TspDTI	ATGAA	2 cut(s)	17, 612
TspGWI	ACGGA	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	201
XapI	RAATTY	2 cut(s)	250, 451
XceI	RCATGY	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.