Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

38942608 .. 38943330

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAACTACAGTTACCAGCTCTCAGACTCCAACCAGCAAAGCCTCGAATCAGTCTCCTCCACCAACAAGCCCGAGTCGCCTTCCTTATCTGACACGAGCATCATGACTAGCCGTTCACCTCATTCCGACGGAGCGGTGATACTAGCCTCGAGCAGGCCGAAGAAGCGAGCAGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCTGTCTACCGGGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCGACTGTTGAGATGGCAGCTCGGGCACACGATGTGGCGGCATTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCCGCGTGGCGGTTGCCCGTTCCGGCTTCCAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCCGAGACATTTCGACCTGAGGAATTCGGCGGCGTCTCAAGCAGCTGCGACGACAACGAGATAGAACATGAGAATGAGAATGTTGAGATGGTCAACGAGAAGAAGAACGCCGGCTTCTACGAGGATGAAGAGGCGCTCTTTGACATGTCGAGGTTGCTGACTAGGATGGCGGAGGGTCCACTGCTCTCTCCGCCTCGTCATTACTTGGACAGTATGAACTGGGCACACGATCGGGTGGAAAGCCAGTCAAATTTCAGCTTGTGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

241

Amino Acids

27.26

Weight (kDa)

6.61

Isoelectric Point (pI)

71.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	68 - 118	5.2e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccBSI	CCGCTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	386
AciI	CCGC	9 cut(s)	134, 335, 384, 391, 438, 441, 480, 620, 641
AcsI	RAATTY	3 cut(s)	279, 473, 700
AcyI	GRCGYC	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	153, 282, 351, 390
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	6 cut(s)	19, 317, 421, 495, 708, 717
AluI	AGCT	6 cut(s)	19, 317, 421, 495, 708, 717
Alw26I	GTCTC	4 cut(s)	58, 185, 449, 490
Ama87I	CYCGRG	4 cut(s)	71, 148, 287, 318
AoxI	GGCC	3 cut(s)	155, 342, 435
ApeKI	GCWGC	4 cut(s)	314, 449, 492, 495
ApoI	RAATTY	3 cut(s)	279, 473, 700
AspLEI	GCGC	2 cut(s)	225, 586
AspS9I	GGNCC	3 cut(s)	343, 435, 626
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	108, 148
AvaI	CYCGRG	4 cut(s)	71, 148, 287, 318
AvaII	GGWCC	1 cut(s)	626
AxyI	CCTNAGG	2 cut(s)	347, 468
BaeGI	GKGCMC	2 cut(s)	325, 676
BauI	CACGAG	1 cut(s)	94
BbvI	GCAGC	4 cut(s)	326, 436, 482, 504
BccI	CCATC	3 cut(s)	304, 532, 610
BceAI	ACGGC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	4 cut(s)	58, 185, 449, 490
BfaI	CTAG	3 cut(s)	108, 143, 612
BfmI	CTRYAG	1 cut(s)	7
BfoI	RGCGCY	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
BlsI	GCNGC	8 cut(s)	316, 337, 439, 442, 451, 482, 494, 497
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	4 cut(s)	71, 148, 287, 318
BmgT120I	GGNCC	3 cut(s)	343, 435, 626
BmiI	GGNNCC	2 cut(s)	261, 627
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	679
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	211, 444
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 282, 351, 390
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	2 cut(s)	674, 694
Bse21I	CCTNAGG	2 cut(s)	347, 468
BseDI	CCNNGG	2 cut(s)	211, 444
BseGI	GGATG	2 cut(s)	580, 621
BseLI	CCNNNNNNNGG	4 cut(s)	153, 282, 351, 390
BseMII	CTCAG	2 cut(s)	36, 459
BseNI	ACTGG	2 cut(s)	674, 694
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	2 cut(s)	325, 676
BseXI	GCAGC	4 cut(s)	326, 436, 482, 504
Bsh1236I	CGCG	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	682
BshFI	GGCC	3 cut(s)	157, 344, 437
BsiEI	CGRYCG	1 cut(s)	682
BsiHKCI	CYCGRG	4 cut(s)	71, 148, 287, 318
BsiSI	CCGG	3 cut(s)	211, 404, 561
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	4 cut(s)	153, 282, 351, 390
BsmAI	GTCTC	4 cut(s)	58, 185, 449, 490
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	157, 344, 437
BsoBI	CYCGRG	4 cut(s)	71, 148, 287, 318
Bsp1286I	GDGCHC	2 cut(s)	325, 676
Bsp143I	GATC	1 cut(s)	679
BspACI	CCGC	9 cut(s)	134, 335, 384, 391, 438, 441, 480, 620, 641
BspANI	GGCC	3 cut(s)	157, 344, 437
BspCNI	CTCAG	2 cut(s)	35, 460
BspFNI	CGCG	1 cut(s)	386
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	261, 627
BspMI	ACCTGC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	674, 694
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	211, 444
BssMI	GATC	1 cut(s)	679
BssNI	GRCGYC	1 cut(s)	483
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst4CI	ACNGT	3 cut(s)	11, 304, 662
Bst6I	CTCTTC	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	483
BstC8I	GCNNGC	5 cut(s)	155, 168, 360, 364, 562
BstDEI	CTNAG	3 cut(s)	22, 347, 468
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	580, 621
BstFNI	CGCG	1 cut(s)	386
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	225, 586
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	4 cut(s)	58, 185, 449, 490
BstMBI	GATC	1 cut(s)	679
BstMCI	CGRYCG	1 cut(s)	682
BstNSI	RCATGY	2 cut(s)	366, 598
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	7
BstSLI	GKGCMC	2 cut(s)	325, 676
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	4 cut(s)	326, 436, 482, 504
Bsu36I	CCTNAGG	2 cut(s)	347, 468
BsuRI	GGCC	3 cut(s)	157, 344, 437
BtsCI	GGATG	2 cut(s)	580, 621
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	629
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	5 cut(s)	155, 168, 360, 364, 562
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	2 cut(s)	225, 586
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	343, 435, 626
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	4 cut(s)	103, 363, 518, 595
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	22, 347, 468
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
DraIII	CACNNNGTG	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	2 cut(s)	630, 635
Eco47I	GGWCC	1 cut(s)	626
Eco81I	CCTNAGG	2 cut(s)	347, 468
Eco88I	CYCGRG	4 cut(s)	71, 148, 287, 318
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	4 cut(s)	106, 366, 521, 598
FaiI	YATR	5 cut(s)	104, 364, 519, 596, 665
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	4 cut(s)	102, 362, 517, 594
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
FokI	GGATG	2 cut(s)	587, 628
Fsp4HI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
FspBI	CTAG	3 cut(s)	108, 143, 612
GlaI	GCGC	2 cut(s)	224, 585
GluI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	3 cut(s)	157, 344, 437
HapII	CCGG	3 cut(s)	211, 404, 561
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	2 cut(s)	225, 586
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	106, 366, 521, 598
Hin6I	GCGC	2 cut(s)	223, 584
HinP1I	GCGC	2 cut(s)	223, 584
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	5 cut(s)	26, 47, 74, 193, 380
HpaII	CCGG	3 cut(s)	211, 404, 561
HphI	GGTGA	2 cut(s)	108, 148
Hpy166II	GTNNAC	4 cut(s)	116, 208, 544, 629
Hpy188I	TCNGA	3 cut(s)	25, 91, 127
Hpy188III	TCNNGA	2 cut(s)	103, 289
Hpy8I	GTNNAC	4 cut(s)	116, 208, 544, 629
Hpy99I	CGWCG	2 cut(s)	131, 503
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	3 cut(s)	11, 304, 662
HpyCH4IV	ACGT	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	22, 347, 468
HpySE526I	ACGT	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	106, 366, 521, 598
HspAI	GCGC	2 cut(s)	223, 584
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Kzo9I	GATC	1 cut(s)	679
LmnI	GCTCC	3 cut(s)	131, 259, 714
Lsp1109I	GCAGC	4 cut(s)	326, 436, 482, 504
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	3 cut(s)	108, 143, 612
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	681
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	1 cut(s)	679
MboII	GAAGA	4 cut(s)	172, 562, 565, 590
MhlI	GDGCHC	2 cut(s)	325, 676
MluCI	AATT	4 cut(s)	279, 370, 473, 700
MlyI	GAGTC	3 cut(s)	20, 83, 187
MmeI	TCCRAC	2 cut(s)	54, 150
MroNI	GCCGGC	1 cut(s)	560
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	3 cut(s)	211, 404, 561
MspR9I	CCNGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	386
NaeI	GCCGGC	1 cut(s)	562
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	679
NgoMIV	GCCGGC	1 cut(s)	560
NlaIII	CATG	4 cut(s)	106, 366, 521, 598
NlaIV	GGNNCC	2 cut(s)	261, 627
NmeAIII	GCCGAG	2 cut(s)	469, 478
NspI	RCATGY	2 cut(s)	366, 598
PaeI	GCATGC	1 cut(s)	366
PaeR7I	CTCGAG	1 cut(s)	148
PagI	TCATGA	1 cut(s)	102
PciI	ACATGT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	47, 380
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	8 cut(s)	316, 337, 439, 442, 451, 482, 494, 497
Ple19I	CGATCG	1 cut(s)	682
PleI	GAGTC	3 cut(s)	20, 82, 187
PpsI	GAGTC	3 cut(s)	20, 82, 187
PscI	ACATGT	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	261, 627
PspPI	GGNCC	3 cut(s)	343, 435, 626
PspXI	VCTCGAGB	1 cut(s)	148
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	522
SatI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	3 cut(s)	343, 435, 626
SchI	GAGTC	3 cut(s)	20, 83, 187
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	2 cut(s)	325, 676
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	2 cut(s)	148, 487
SmoI	CTYRAG	2 cut(s)	148, 487
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	4 cut(s)	279, 370, 473, 700
SsiI	CCGC	9 cut(s)	134, 335, 384, 391, 438, 441, 480, 620, 641
SspMI	CTAG	3 cut(s)	108, 143, 612
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	11, 304, 662
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	5 cut(s)	45, 149, 423, 463, 599
TasI	AATT	4 cut(s)	279, 370, 473, 700
TauI	GCSGC	4 cut(s)	338, 440, 443, 483
TfiI	GAWTC	2 cut(s)	47, 380
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	4 cut(s)	314, 449, 492, 495
TspDTI	ATGAA	3 cut(s)	17, 591, 680
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	626
XagI	CCTNNNNNAGG	1 cut(s)	151
XapI	RAATTY	3 cut(s)	279, 473, 700
XceI	RCATGY	2 cut(s)	366, 598
XhoI	CTCGAG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	3 cut(s)	108, 143, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.