Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000950.1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

20850 .. 21791

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000950.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgtccagcacggcccaggtagcagccacgtcactagcctcacaccgcgtgttgtcgtgtccagtctacgaatgcacgggttccacatcaaacctaatgtatataagccctcccacccgtcgtttttgtttcataagccttttccccagaacacagtctactaagaaaaccaaactcacactaccctcagcgaagaaaaccaaaccagctctacttcagatgaactccagttaccagttctcagactccaaccagcaaagcctcgaatcagtctcctccatcgacaagcccgagtcgtcttccttatctgacacgagcttcacgactcgccgttcacctcattccgacggagcggtgatacttgcttcgagcaggccgaagaagcgtgccggtaggcgagtgttcaaggagactcggcaccctgtctaccggggcgtgaggcgcaggaacaataacaagtgggtgtgcgaggtcagggagccgaacaaaaagaccagaatttggctcgggacttacccaactcttgagatggccgctcgggcacacgatgtggcggcgttggcccttagggggaagcaggcatgcctcaattttgctgattccgtgtggcggttgcccattccggcttctaaagaccagctcgacattcgcagggccgccgccgaggctgctgagacatttcgacctgaggagttcggcggcgtctcgagcagctgtgacgacaacgagagggaatatgaggatgagaatgttgagatggacaacgagaagaagaatgatggcttctacgaggatgaagaggggctcttcgacatgcccagattgctgactagcatggcggagggtccactgctctctccgccacgtcattacttggacagtatgaactgggcagacgatcaggtggacagcgaatcaaatttcagcttgtggagcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

313

Amino Acids

35.3

Weight (kDa)

8.15

Isoelectric Point (pI)

66.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	501
AccBSI	CCGCTC	2 cut(s)	353, 536
AccI	GTMKAC	3 cut(s)	66, 158, 426
AccII	CGCG	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	2 cut(s)	498, 919
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	702
AdeI	CACNNNGTG	2 cut(s)	49, 550
AfiI	CCNNNNNNNGG	3 cut(s)	501, 570, 609
AgsI	TTSAA	1 cut(s)	406
AjiI	CACGTC	2 cut(s)	30, 866
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	6 cut(s)	209, 318, 640, 714, 927, 936
AluI	AGCT	6 cut(s)	209, 318, 640, 714, 927, 936
Alw26I	GTCTC	4 cut(s)	277, 404, 668, 709
Ama87I	CYCGRG	4 cut(s)	290, 506, 537, 706
AoxI	GGCC	5 cut(s)	12, 374, 531, 561, 654
ApeKI	GCWGC	3 cut(s)	23, 668, 711
ApoI	RAATTY	2 cut(s)	498, 919
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	4 cut(s)	13, 562, 654, 845
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	327, 367
AvaI	CYCGRG	4 cut(s)	290, 506, 537, 706
AvaII	GGWCC	1 cut(s)	845
AxyI	CCTNAGG	2 cut(s)	566, 687
BaeGI	GKGCMC	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	807
BauI	CACGAG	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	35, 655, 723
BccI	CCATC	4 cut(s)	287, 523, 751, 773
BceAI	ACGGC	2 cut(s)	27, 315
BciT130I	CCWGG	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	4 cut(s)	277, 404, 668, 709
BfaI	CTAG	2 cut(s)	35, 831
BglI	GCCNNNNNGGC	2 cut(s)	539, 665
BisI	GCNGC	8 cut(s)	24, 534, 555, 657, 660, 669, 700, 712
BlsI	GCNGC	8 cut(s)	25, 535, 556, 658, 661, 670, 701, 713
Bme1390I	CCNGG	2 cut(s)	17, 431
Bme18I	GGWCC	1 cut(s)	845
BmeT110I	CYCGRG	4 cut(s)	290, 506, 537, 706
BmgBI	CACGTC	2 cut(s)	30, 866
BmgT120I	GGNCC	4 cut(s)	13, 562, 654, 845
BmiI	GGNNCC	4 cut(s)	82, 419, 480, 846
BmrFI	CCNGG	2 cut(s)	17, 431
BmrI	ACTGGG	1 cut(s)	898
BmuI	ACTGGG	1 cut(s)	898
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	702
BsaJI	CCNNGG	3 cut(s)	15, 430, 663
Bsc4I	CCNNNNNNNGG	3 cut(s)	501, 570, 609
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	4 cut(s)	62, 228, 235, 893
Bse21I	CCTNAGG	2 cut(s)	566, 687
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	15, 430, 663
BseGI	GGATG	2 cut(s)	748, 799
BseLI	CCNNNNNNNGG	3 cut(s)	501, 570, 609
BseMII	CTCAG	4 cut(s)	201, 255, 663, 678
BseNI	ACTGG	4 cut(s)	62, 228, 235, 893
BseRI	GAGGAG	2 cut(s)	265, 704
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	3 cut(s)	35, 655, 723
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	5 cut(s)	14, 376, 533, 563, 656
BshNI	GGYRCC	1 cut(s)	417
BsiHKCI	CYCGRG	4 cut(s)	290, 506, 537, 706
BsiSI	CCGG	3 cut(s)	390, 430, 623
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	3 cut(s)	501, 570, 609
BsmAI	GTCTC	4 cut(s)	277, 404, 668, 709
BsmBI	CGTCTC	1 cut(s)	709
BsmFI	GGGAC	1 cut(s)	523
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	5 cut(s)	14, 376, 533, 563, 656
BsoBI	CYCGRG	4 cut(s)	290, 506, 537, 706
Bsp1286I	GDGCHC	2 cut(s)	544, 807
Bsp143I	GATC	1 cut(s)	898
BspANI	GGCC	5 cut(s)	14, 376, 533, 563, 656
BspCNI	CTCAG	4 cut(s)	200, 254, 664, 679
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	82, 419, 480, 846
BspQI	GCTCTTC	1 cut(s)	812
BspT107I	GGYRCC	1 cut(s)	417
BsrBI	CCGCTC	2 cut(s)	353, 536
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	4 cut(s)	62, 228, 235, 893
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	3 cut(s)	15, 430, 663
BssMI	GATC	1 cut(s)	898
BssNI	GRCGYC	1 cut(s)	702
BssSI	CACGAG	1 cut(s)	313
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	156, 881
Bst6I	CTCTTC	2 cut(s)	792, 812
BstACI	GRCGYC	1 cut(s)	702
BstC8I	GCNNGC	4 cut(s)	374, 387, 579, 583
BstDEI	CTNAG	6 cut(s)	162, 187, 241, 566, 672, 687
BstF5I	GGATG	2 cut(s)	748, 799
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	1 cut(s)	901
BstMAI	GTCTC	4 cut(s)	277, 404, 668, 709
BstMBI	GATC	1 cut(s)	898
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	2 cut(s)	585, 817
BstSCI	CCNGG	2 cut(s)	15, 429
BstSLI	GKGCMC	1 cut(s)	544
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	35, 655, 723
BstV2I	GAAGAC	1 cut(s)	291
Bsu36I	CCTNAGG	2 cut(s)	566, 687
BsuRI	GGCC	5 cut(s)	14, 376, 533, 563, 656
BtrI	CACGTC	2 cut(s)	30, 866
BtsCI	GGATG	2 cut(s)	748, 799
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	1 cut(s)	848
Cac8I	GCNNGC	4 cut(s)	374, 387, 579, 583
CfoI	GCGC	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	4 cut(s)	13, 562, 654, 845
CseI	GACGC	1 cut(s)	691
CviAII	CATG	3 cut(s)	582, 814, 835
DdeI	CTNAG	6 cut(s)	162, 187, 241, 566, 672, 687
DpnI	GATC	1 cut(s)	900
DpnII	GATC	1 cut(s)	898
DraIII	CACNNNGTG	2 cut(s)	49, 550
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	792, 812
EarI	CTCTTC	2 cut(s)	792, 812
EciI	GGCGGA	2 cut(s)	849, 854
Eco24I	GRGCYC	1 cut(s)	807
Eco47I	GGWCC	1 cut(s)	845
Eco57I	CTGAAG	1 cut(s)	200
Eco81I	CCTNAGG	2 cut(s)	566, 687
Eco88I	CYCGRG	4 cut(s)	290, 506, 537, 706
EcoRII	CCWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	807
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	3 cut(s)	585, 817, 838
FaiI	YATR	8 cut(s)	102, 104, 134, 583, 738, 815, 836, 884
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	3 cut(s)	581, 813, 834
FblI	GTMKAC	3 cut(s)	66, 158, 426
Fnu4HI	GCNGC	8 cut(s)	24, 534, 555, 657, 660, 669, 700, 712
FokI	GGATG	2 cut(s)	755, 806
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	8 cut(s)	24, 534, 555, 657, 660, 669, 700, 712
FspBI	CTAG	2 cut(s)	35, 831
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	8 cut(s)	24, 534, 555, 657, 660, 669, 700, 712
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	5 cut(s)	14, 376, 533, 563, 656
HapII	CCGG	3 cut(s)	390, 430, 623
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	3 cut(s)	585, 817, 838
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	7 cut(s)	245, 266, 293, 325, 412, 599, 914
HpaII	CCGG	3 cut(s)	390, 430, 623
HphI	GGTGA	2 cut(s)	327, 367
Hpy166II	GTNNAC	6 cut(s)	67, 159, 335, 427, 848, 907
Hpy188I	TCNGA	4 cut(s)	219, 244, 310, 346
Hpy188III	TCNNGA	4 cut(s)	322, 508, 524, 706
Hpy8I	GTNNAC	6 cut(s)	67, 159, 335, 427, 848, 907
Hpy99I	CGWCG	2 cut(s)	123, 350
HpyCH4III	ACNGT	2 cut(s)	156, 881
HpyCH4IV	ACGT	2 cut(s)	29, 865
HpyCH4V	TGCA	1 cut(s)	75
HpyF3I	CTNAG	6 cut(s)	162, 187, 241, 566, 672, 687
HpySE526I	ACGT	2 cut(s)	29, 865
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	3 cut(s)	585, 817, 838
HspAI	GCGC	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	898
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	3 cut(s)	350, 478, 933
Lsp1109I	GCAGC	3 cut(s)	35, 655, 723
MaeI	CTAG	2 cut(s)	35, 831
MaeII	ACGT	2 cut(s)	29, 865
MaeIII	GTNAC	3 cut(s)	30, 230, 716
MalI	GATC	1 cut(s)	900
MbiI	CCGCTC	2 cut(s)	353, 536
MboI	GATC	1 cut(s)	898
MboII	GAAGA	7 cut(s)	205, 291, 391, 781, 784, 799, 809
MhlI	GDGCHC	2 cut(s)	544, 807
MluCI	AATT	3 cut(s)	498, 589, 919
MlyI	GAGTC	4 cut(s)	239, 302, 319, 406
MmeI	TCCRAC	2 cut(s)	273, 369
MspA1I	CMGCKG	1 cut(s)	714
MspI	CCGG	3 cut(s)	390, 430, 623
MspR9I	CCNGG	2 cut(s)	17, 431
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	48
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	1 cut(s)	898
NlaIII	CATG	3 cut(s)	585, 817, 838
NlaIV	GGNNCC	4 cut(s)	82, 419, 480, 846
NmeAIII	GCCGAG	2 cut(s)	394, 688
NmuCI	GTSAC	2 cut(s)	30, 716
NspI	RCATGY	2 cut(s)	585, 817
PaeI	GCATGC	1 cut(s)	585
PaeR7I	CTCGAG	1 cut(s)	706
PciSI	GCTCTTC	1 cut(s)	812
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 320, 374
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	3 cut(s)	266, 599, 914
PflMI	CCANNNNNTGG	1 cut(s)	501
PkrI	GCNGC	8 cut(s)	25, 535, 556, 658, 661, 670, 701, 713
PleI	GAGTC	4 cut(s)	239, 301, 319, 406
PpsI	GAGTC	4 cut(s)	239, 301, 319, 406
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	82, 419, 480, 846
PspPI	GGNCC	4 cut(s)	13, 562, 654, 845
PsrI	GAACNNNNNNTAC	4 cut(s)	142, 174, 215, 247
PvuII	CAGCTG	1 cut(s)	714
SapI	GCTCTTC	1 cut(s)	812
SatI	GCNGC	8 cut(s)	24, 534, 555, 657, 660, 669, 700, 712
Sau3AI	GATC	1 cut(s)	898
Sau96I	GGNCC	4 cut(s)	13, 562, 654, 845
SchI	GAGTC	4 cut(s)	239, 302, 319, 406
ScrFI	CCNGG	2 cut(s)	17, 431
SduI	GDGCHC	2 cut(s)	544, 807
Sfr274I	CTCGAG	1 cut(s)	706
SinI	GGWCC	1 cut(s)	845
SlaI	CTCGAG	1 cut(s)	706
SmlI	CTYRAG	2 cut(s)	524, 706
SmoI	CTYRAG	2 cut(s)	524, 706
SphI	GCATGC	1 cut(s)	585
Sse9I	AATT	3 cut(s)	498, 589, 919
SspMI	CTAG	2 cut(s)	35, 831
StyD4I	CCNGG	2 cut(s)	15, 429
TaaI	ACNGT	2 cut(s)	156, 881
TaiI	ACGT	2 cut(s)	32, 868
TaqI	TCGA	7 cut(s)	264, 282, 368, 642, 682, 707, 810
TasI	AATT	3 cut(s)	498, 589, 919
TauI	GCSGC	5 cut(s)	536, 557, 659, 662, 702
TfiI	GAWTC	3 cut(s)	266, 599, 914
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	2 cut(s)	30, 716
TseI	GCWGC	3 cut(s)	23, 668, 711
Tsp45I	GTSAC	2 cut(s)	30, 716
TspDTI	ATGAA	4 cut(s)	121, 236, 810, 899
TspGWI	ACGGA	2 cut(s)	363, 592
TspRI	CASTG	1 cut(s)	855
Van91I	CCANNNNNTGG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	845
XapI	RAATTY	2 cut(s)	498, 919
XceI	RCATGY	2 cut(s)	585, 817
XhoI	CTCGAG	1 cut(s)	706
XmiI	GTMKAC	3 cut(s)	66, 158, 426
XspI	CTAG	2 cut(s)	35, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.