Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

3816249 .. 3819198

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0053800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGATGACAAATCCAAGGGGAAAGGGTTTTCAAGCAAAGCAAGAGGGCCAAAACAACAACAACAATGATGGGAATATCATGACTAGTTATAACAAGGCAGCTTCATCTAGTACTACTACTTCAAGGCAATGGTCTGGATTTCGAAATCCAAGGATTGTTCGTGTCTCGCGAACCTTTGGCGGAAAAGACAGGCACAGCAAGGTCTCAACTGTGAGGGGATTGAGAGACAGAAGAATTAGGCTTTCAGTGCCAACAGCAATTCAGTTATATGACCTTCAAGACAGGCTTGGTCTTAGCCAACCTAGCAAGGTAATAGATTGGTTGCTTGAAGTTACTGAAGATGATATTGATAAGCTCCCACCACTCCAACTACTTCCTCATCATGGTTTGTTCAATACTACTAGTTCTGCTCATCATCAATTTCATCATCATCAACAGCAAATTCTCAATCCTCTTAATGTTCCCTTCTTTGATGTGAATCAAAGGCTTACTGAGCAAGTAGTACTTGATGAGAGTAAAGGCAAGTCAATCAAAGCAAATGATCATCAACGAGATCATGATGATGAAGCCTTGGCTCAGAAGTTATTTCCTATAGGCAATATGCCTTCTTCCATACCTGGATTGCTGAACAATGCCATGGCATACAACAACTACTTTCACCATCACAGTTCAGAGCCTTCGAGTTTGTCTCTTTCTCAGTTTGGTAGCAGTCATGGATTTCCACTAATGCCCCAAATGGATCATATGATGAGTAGTAACAATGGCTTATCATTTTCAACTACTTCAATGCCAATGGCATCTGGGTCTCAATTGTTCTTCTGTCCATCAACAGCTACGCCGGTATCTTCACTTTTTGGTCCATATGCGCCCTACATTACCACTACTACCGCAGTAGTAGAGAATAGTAGTACCAGTGATGATCGTCAGCCAGAACTTAGACGAACCAATAACCATATGATCCAATTGTTGAGCTCATCAAGTACTACTAGTACTACTCTACAGAATTTTGAACCTAATAATGCTCTCATGCCTTCTCTTCAATATTCTATTGGCTCATCTTTGAGATCCTTTCCAACATTGGTTAATCCGAAGCTCCATTCACAAAACAATGATGGATCATCAAGCCAACCAGACAAGGACCATACTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

384

Amino Acids

42.63

Weight (kDa)

7.98

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	61 - 155	1.9e-25	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccII	CGCG	1 cut(s)	169
AciI	CCGC	2 cut(s)	180, 888
AclWI	GGATC	4 cut(s)	747, 952, 1059, 1123
AcsI	RAATTY	2 cut(s)	441, 1003
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	5 cut(s)	112, 504, 910, 982, 991
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	9 cut(s)	32, 123, 278, 329, 394, 777, 786, 1010, 1040
AhlI	ACTAGT	3 cut(s)	83, 401, 986
AjnI	CCWGG	1 cut(s)	616
AluBI	AGCT	5 cut(s)	101, 355, 833, 972, 1093
AluI	AGCT	5 cut(s)	101, 355, 833, 972, 1093
Alw21I	GWGCWC	1 cut(s)	974
Alw26I	GTCTC	5 cut(s)	169, 208, 219, 693, 810
AlwI	GGATC	4 cut(s)	747, 952, 1059, 1123
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	441, 1003
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	3 cut(s)	46, 857, 1138
AsuHPI	GGTGA	1 cut(s)	650
AsuII	TTCGAA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	857, 1138
BaeI	ACNNNNGTAYC	2 cut(s)	825, 858
BanII	GRGCYC	1 cut(s)	974
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
Bbv12I	GWGCWC	1 cut(s)	974
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	4 cut(s)	62, 669, 832, 1106
BciT130I	CCWGG	1 cut(s)	618
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	5 cut(s)	169, 208, 219, 693, 810
BcuI	ACTAGT	3 cut(s)	83, 401, 986
BfaI	CTAG	5 cut(s)	84, 108, 303, 402, 987
BfmI	CTRYAG	2 cut(s)	591, 998
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	4 cut(s)	112, 504, 982, 991
Bme1390I	CCNGG	1 cut(s)	618
Bme18I	GGWCC	2 cut(s)	857, 1138
BmgT120I	GGNCC	3 cut(s)	46, 857, 1138
BmiI	GGNNCC	1 cut(s)	1150
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
Bpu14I	TTCGAA	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	477
BsaI	GGTCTC	2 cut(s)	208, 810
BsaJI	CCNNGG	4 cut(s)	14, 149, 570, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	838
Bse1I	ACTGG	2 cut(s)	912, 1150
Bse3DI	GCAATG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	4 cut(s)	14, 149, 570, 636
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	3 cut(s)	483, 590, 710
BseNI	ACTGG	2 cut(s)	912, 1150
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	974
BsiSI	CCGG	1 cut(s)	839
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	5 cut(s)	169, 208, 219, 693, 810
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	2 cut(s)	208, 810
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	974
Bsp143I	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
Bsp19I	CCATGG	1 cut(s)	636
Bsp68I	TCGCGA	1 cut(s)	169
BspACI	CCGC	2 cut(s)	180, 888
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	3 cut(s)	484, 589, 709
BspFNI	CGCG	1 cut(s)	169
BspHI	TCATGA	2 cut(s)	78, 556
BspLI	GGNNCC	1 cut(s)	1150
BspPI	GGATC	4 cut(s)	747, 952, 1059, 1123
BspT104I	TTCGAA	1 cut(s)	142
BspTNI	GGTCTC	2 cut(s)	208, 810
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	838
BsrI	ACTGG	2 cut(s)	912, 1150
BssAI	RCCGGY	1 cut(s)	838
BssECI	CCNNGG	4 cut(s)	14, 149, 570, 636
BssMI	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
BssT1I	CCWWGG	4 cut(s)	14, 149, 570, 636
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	2 cut(s)	211, 668
Bst6I	CTCTTC	1 cut(s)	1041
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	5 cut(s)	293, 492, 576, 696, 935
BstDSI	CCRYGG	1 cut(s)	636
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	7 cut(s)	544, 556, 742, 922, 960, 1067, 1118
BstMAI	GTCTC	5 cut(s)	169, 208, 219, 693, 810
BstMBI	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 303, 493
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	616
BstSFI	CTRYAG	2 cut(s)	591, 998
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	1064
BstYI	RGATCY	1 cut(s)	1064
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	252, 919
BtuMI	TCGCGA	1 cut(s)	169
CciI	TCATGA	2 cut(s)	78, 556
CfoI	GCGC	1 cut(s)	868
Cfr10I	RCCGGY	1 cut(s)	838
Cfr13I	GGNCC	3 cut(s)	46, 857, 1138
Csp6I	GTAC	5 cut(s)	111, 503, 909, 981, 990
CviAII	CATG	6 cut(s)	79, 383, 557, 637, 713, 1027
CviQI	GTAC	5 cut(s)	111, 503, 909, 981, 990
DdeI	CTNAG	5 cut(s)	293, 492, 576, 696, 935
DpnI	GATC	7 cut(s)	543, 555, 741, 921, 959, 1066, 1117
DpnII	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	972
Eco130I	CCWWGG	4 cut(s)	14, 149, 570, 636
Eco24I	GRGCYC	1 cut(s)	974
Eco31I	GGTCTC	2 cut(s)	208, 810
Eco47I	GGWCC	2 cut(s)	857, 1138
Eco53kI	GAGCTC	1 cut(s)	972
Eco57I	CTGAAG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	972
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	4 cut(s)	14, 149, 570, 636
EcoT38I	GRGCYC	1 cut(s)	974
ErhI	CCWWGG	4 cut(s)	14, 149, 570, 636
FaeI	CATG	6 cut(s)	82, 386, 560, 640, 716, 1030
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 489, 521
FatI	CATG	6 cut(s)	78, 382, 556, 636, 712, 1026
FauNDI	CATATG	3 cut(s)	744, 862, 954
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	974
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	5 cut(s)	84, 108, 303, 402, 987
GlaI	GCGC	1 cut(s)	867
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	839
HhaI	GCGC	1 cut(s)	868
Hin1II	CATG	6 cut(s)	82, 386, 560, 640, 716, 1030
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HinfI	GANTC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	1 cut(s)	650
Hpy188I	TCNGA	3 cut(s)	579, 673, 1089
Hpy188III	TCNNGA	5 cut(s)	79, 135, 168, 278, 557
HpyAV	CCTTC	5 cut(s)	284, 475, 615, 687, 1041
HpyCH4III	ACNGT	2 cut(s)	211, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 303, 493
HpyF3I	CTNAG	5 cut(s)	293, 492, 576, 696, 935
Hsp92II	CATG	6 cut(s)	82, 386, 560, 640, 716, 1030
HspAI	GCGC	1 cut(s)	866
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
LmnI	GCTCC	2 cut(s)	360, 1098
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	806
MaeI	CTAG	5 cut(s)	84, 108, 303, 402, 987
MaeIII	GTNAC	2 cut(s)	331, 755
MalI	GATC	7 cut(s)	543, 555, 741, 921, 959, 1066, 1117
MboI	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
MboII	GAAGA	6 cut(s)	243, 350, 600, 808, 837, 1028
MfeI	CAATTG	2 cut(s)	809, 962
MflI	RGATCY	1 cut(s)	1064
MhlI	GDGCHC	1 cut(s)	974
MluCI	AATT	7 cut(s)	234, 258, 419, 441, 809, 962, 1003
MmeI	TCCRAC	2 cut(s)	391, 1097
MnlI	CCTC	4 cut(s)	37, 207, 387, 462
MseI	TTAA	2 cut(s)	456, 1083
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	2 cut(s)	809, 962
MvaI	CCWGG	1 cut(s)	618
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	247, 303, 493
NcoI	CCATGG	1 cut(s)	636
NdeI	CATATG	3 cut(s)	744, 862, 954
NdeII	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
NlaIII	CATG	6 cut(s)	82, 386, 560, 640, 716, 1030
NlaIV	GGNNCC	1 cut(s)	1150
NruI	TCGCGA	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	142
PagI	TCATGA	2 cut(s)	78, 556
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	974
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	1150
PspPI	GGNCC	3 cut(s)	46, 857, 1138
PsuI	RGATCY	1 cut(s)	1064
RruI	TCGCGA	1 cut(s)	169
RsaI	GTAC	5 cut(s)	112, 504, 910, 982, 991
RsaNI	GTAC	5 cut(s)	111, 503, 909, 981, 990
RseI	CAYNNNNRTG	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	974
SaqAI	TTAA	2 cut(s)	456, 1083
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
Sau96I	GGNCC	3 cut(s)	46, 857, 1138
ScaI	AGTACT	4 cut(s)	112, 504, 982, 991
ScrFI	CCNGG	1 cut(s)	618
SduI	GDGCHC	1 cut(s)	974
SfaNI	GCATC	1 cut(s)	806
SfcI	CTRYAG	2 cut(s)	591, 998
SfuI	TTCGAA	1 cut(s)	142
SinI	GGWCC	2 cut(s)	857, 1138
SmiMI	CAYNNNNRTG	1 cut(s)	561
SpeI	ACTAGT	3 cut(s)	83, 401, 986
Sse9I	AATT	7 cut(s)	234, 258, 419, 441, 809, 962, 1003
SsiI	CCGC	2 cut(s)	180, 888
SspI	AATATT	1 cut(s)	1043
SspMI	CTAG	5 cut(s)	84, 108, 303, 402, 987
SstI	GAGCTC	1 cut(s)	974
StyD4I	CCNGG	1 cut(s)	616
StyI	CCWWGG	4 cut(s)	14, 149, 570, 636
TaaI	ACNGT	2 cut(s)	211, 668
TaqI	TCGA	2 cut(s)	142, 680
TasI	AATT	7 cut(s)	234, 258, 419, 441, 809, 962, 1003
TatI	WGTACW	4 cut(s)	110, 502, 980, 989
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	2 cut(s)	456, 1083
Tru9I	TTAA	2 cut(s)	456, 1083
TscAI	CASTG	2 cut(s)	252, 919
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	93, 413, 579
TspRI	CASTG	2 cut(s)	252, 919
VpaK11BI	GGWCC	2 cut(s)	857, 1138
XapI	RAATTY	2 cut(s)	441, 1003
XspI	CTAG	5 cut(s)	84, 108, 303, 402, 987
ZrmI	AGTACT	4 cut(s)	112, 504, 982, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.