Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

4286204 .. 4289069

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAGACTAACAGCGAAGAACAAATGATAAAACTGTTTGGAATTCCTCTTTCTGATAAACCCAGATGGCAACAATTTCTCATCTGTTCTTCTGGTTTCTTCTTTGGTTACCTCGTTAATGGCATCTGCGAGGAATATGTGTACAACCGGCTTAAATTCAGTTATGGATGGTATTTCACGTTTGCGCAAGGATTGGTGTACATTGCCTTGATTTACATGTATGGCTTCAGGACGAAGCAAATGGTTAATCCATGGAAGACTTACGTGAAACTATCTGGTGTTCTTATGGGTTCTCATGGCCTCACCAAAGGCTCCTTGGCTTATCTCAATTATCCTGCTCAAATCATGTTCAAATCCACTAAGGTTTTGCCGGTTATGGTTATGGGAGCTTTTATACCAGGGTTGAGAAGAAAATACCCTGTCCACGAGTACATATCTGCTATGTTACTTGTAATTGGTCTCATCTTATTCACATTGGCTGATGCCCATACCTCCCCAAACTTCAGTATAATTGGGGTTATGATGATCTCGGGCGCTCTCATCATGGACGCTTTTCTTGGTAACTTACAAGAAGCTATCTTCACGATGAATCCTGAGACAACACAAATGGAGATGTTGTTTTGCTCGACGGTAGTTGGCTTACCGTTCTTACTTGCACCGATGATTCTTACTGGAGAGCTTTTCACAGCTTGGAATTCATGTGCTCAACATCCATATGTGTATGGAGTGTTGGTGTTCGAAGCCATGGCTACATTTATCGGACAAGTCTCCGTTCTATCCCTCATTGCACTCTTTGGCGCAGCCACAACCGCTATGATAACGACGGCGAGAAAAGCGGTAACGCTGTTACTGTCCTATTTGATATTCACAAAGCCTTTAACTGAACAGCACGGTACGGGATTGTTACTCATCTTTATGGGCATTATTCTCAAGATGGTTCCGGATCCAAACCCAAACCCCAAATCTTCGGGTTCGGGTCAGACACCCGGAAAATTGGAACGGGTTAAGTTTGAGAAGGAAGACGATGAAGAGAGTCGTCCATTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

349

Amino Acids

38.94

Weight (kDa)

8.71

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	25 - 313	7.9e-84	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	940
AciI	CCGC	2 cut(s)	810, 836
AclWI	GGATC	2 cut(s)	938, 951
AcsI	RAATTY	3 cut(s)	42, 155, 694
AcuI	CTGAAG	2 cut(s)	211, 487
AfaI	GTAC	4 cut(s)	143, 200, 431, 895
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	4 cut(s)	389, 575, 679, 689
AluI	AGCT	4 cut(s)	389, 575, 679, 689
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	3 cut(s)	464, 590, 772
AlwI	GGATC	2 cut(s)	938, 951
Ama87I	CYCGRG	1 cut(s)	529
Aor13HI	TCCGGA	1 cut(s)	940
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	3 cut(s)	42, 155, 694
AspLEI	GCGC	3 cut(s)	187, 536, 800
AsuC2I	CCSGG	1 cut(s)	987
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	738
AvaI	CYCGRG	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	943
BauI	CACGAG	1 cut(s)	425
BbsI	GAAGAC	3 cut(s)	11, 263, 1026
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	1 cut(s)	812
BccI	CCATC	3 cut(s)	60, 162, 928
BceAI	ACGGC	1 cut(s)	840
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	987
BcoDI	GTCTC	3 cut(s)	464, 590, 772
BfoI	RGCGCY	1 cut(s)	537
BisI	GCNGC	1 cut(s)	801
BlsI	GCNGC	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	399, 987
BmeT110I	CYCGRG	1 cut(s)	529
BmiI	GGNNCC	3 cut(s)	313, 939, 945
BmrFI	CCNGG	2 cut(s)	399, 987
BmsI	GCATC	2 cut(s)	132, 472
BpiI	GAAGAC	3 cut(s)	11, 263, 1026
BpmI	CTGGAG	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	738
BpuEI	CTTGAG	1 cut(s)	914
BpuMI	CCSGG	1 cut(s)	987
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	4 cut(s)	251, 315, 398, 744
BsaWI	WCCGGW	1 cut(s)	940
BsaXI	ACNNNNNCTCC	4 cut(s)	602, 632, 717, 747
Bse118I	RCCGGY	2 cut(s)	147, 370
Bse1I	ACTGG	1 cut(s)	676
Bse3DI	GCAATG	2 cut(s)	201, 783
BseAI	TCCGGA	1 cut(s)	940
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	4 cut(s)	251, 315, 398, 744
BseGI	GGATG	2 cut(s)	173, 709
BseMI	GCAATG	2 cut(s)	201, 783
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	676
BseXI	GCAGC	1 cut(s)	812
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	706
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	4 cut(s)	148, 371, 941, 987
BsmAI	GTCTC	3 cut(s)	464, 590, 772
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	1 cut(s)	529
Bsp119I	TTCGAA	1 cut(s)	738
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp13I	TCCGGA	1 cut(s)	940
Bsp1407I	TGTACA	2 cut(s)	141, 198
Bsp143I	GATC	2 cut(s)	525, 943
Bsp19I	CCATGG	2 cut(s)	251, 744
BspACI	CCGC	2 cut(s)	810, 836
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	586
BspEI	TCCGGA	1 cut(s)	940
BspLI	GGNNCC	3 cut(s)	313, 939, 945
BspPI	GGATC	2 cut(s)	938, 951
BspT104I	TTCGAA	1 cut(s)	738
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	2 cut(s)	201, 783
BsrFI	RCCGGY	2 cut(s)	147, 370
BsrGI	TGTACA	2 cut(s)	141, 198
BsrI	ACTGG	1 cut(s)	676
BssAI	RCCGGY	2 cut(s)	147, 370
BssECI	CCNNGG	4 cut(s)	251, 315, 398, 744
BssMI	GATC	2 cut(s)	525, 943
BssSI	CACGAG	1 cut(s)	425
BssT1I	CCWWGG	3 cut(s)	251, 315, 744
Bst2BI	CACGAG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	5 cut(s)	36, 631, 645, 852, 893
Bst6I	CTCTTC	1 cut(s)	1023
BstAUI	TGTACA	2 cut(s)	141, 198
BstBAI	YACGTR	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	738
BstDEI	CTNAG	2 cut(s)	360, 594
BstDSI	CCRYGG	2 cut(s)	251, 744
BstEII	GGTNACC	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	173, 709
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	3 cut(s)	187, 536, 800
BstKTI	GATC	2 cut(s)	528, 946
BstMAI	GTCTC	3 cut(s)	464, 590, 772
BstMBI	GATC	2 cut(s)	525, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	809, 833
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	220
BstPI	GGTNACC	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	397, 985
BstV1I	GCAGC	1 cut(s)	812
BstV2I	GAAGAC	3 cut(s)	11, 263, 1026
BstX2I	RGATCY	1 cut(s)	943
BstYI	RGATCY	1 cut(s)	943
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	2 cut(s)	251, 744
BtsCI	GGATG	2 cut(s)	173, 709
CfoI	GCGC	3 cut(s)	187, 536, 800
Cfr10I	RCCGGY	2 cut(s)	147, 370
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	4 cut(s)	142, 199, 430, 894
CviAII	CATG	7 cut(s)	217, 252, 296, 346, 544, 699, 745
CviQI	GTAC	4 cut(s)	142, 199, 430, 894
DdeI	CTNAG	2 cut(s)	360, 594
DpnI	GATC	2 cut(s)	527, 945
DpnII	GATC	2 cut(s)	525, 943
Eam1104I	CTCTTC	1 cut(s)	1023
EarI	CTCTTC	1 cut(s)	1023
Eco130I	CCWWGG	3 cut(s)	251, 315, 744
Eco31I	GGTCTC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	211, 487
Eco88I	CYCGRG	1 cut(s)	529
Eco91I	GGTNACC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	107
EcoRI	GAATTC	2 cut(s)	42, 694
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	3 cut(s)	251, 315, 744
ErhI	CCWWGG	3 cut(s)	251, 315, 744
FaeI	CATG	7 cut(s)	220, 255, 299, 349, 547, 702, 748
FatI	CATG	7 cut(s)	216, 251, 295, 345, 543, 698, 744
FauNDI	CATATG	1 cut(s)	715
Fnu4HI	GCNGC	1 cut(s)	801
FokI	GGATG	2 cut(s)	180, 696
Fsp4HI	GCNGC	1 cut(s)	801
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	3 cut(s)	186, 535, 799
GluI	GCNGC	1 cut(s)	801
GsuI	CTGGAG	1 cut(s)	693
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	4 cut(s)	148, 371, 941, 987
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	3 cut(s)	187, 536, 800
Hin1II	CATG	7 cut(s)	220, 255, 299, 349, 547, 702, 748
Hin6I	GCGC	3 cut(s)	185, 534, 798
HinP1I	GCGC	3 cut(s)	185, 534, 798
HinfI	GANTC	3 cut(s)	589, 664, 1033
HpaII	CCGG	4 cut(s)	148, 371, 941, 987
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	142, 199, 424
Hpy188I	TCNGA	3 cut(s)	55, 761, 981
Hpy188III	TCNNGA	5 cut(s)	229, 583, 593, 931, 941
Hpy8I	GTNNAC	3 cut(s)	142, 199, 424
Hpy99I	CGWCG	2 cut(s)	631, 826
HpyAV	CCTTC	1 cut(s)	1009
HpyCH4III	ACNGT	5 cut(s)	36, 631, 645, 852, 893
HpyCH4IV	ACGT	2 cut(s)	179, 264
HpyCH4V	TGCA	2 cut(s)	656, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	809, 833
HpyF3I	CTNAG	2 cut(s)	360, 594
HpySE526I	ACGT	2 cut(s)	179, 264
Hsp92II	CATG	7 cut(s)	220, 255, 299, 349, 547, 702, 748
HspAI	GCGC	3 cut(s)	185, 534, 798
Kpn2I	TCCGGA	1 cut(s)	940
Kzo9I	GATC	2 cut(s)	525, 943
LmnI	GCTCC	2 cut(s)	317, 386
Lsp1109I	GCAGC	1 cut(s)	812
LweI	GCATC	2 cut(s)	132, 472
MaeII	ACGT	2 cut(s)	179, 264
MaeIII	GTNAC	6 cut(s)	107, 444, 560, 838, 846, 903
MalI	GATC	2 cut(s)	527, 945
MboI	GATC	2 cut(s)	525, 943
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	8 cut(s)	42, 74, 155, 328, 453, 510, 694, 992
MlyI	GAGTC	1 cut(s)	1042
MnlI	CCTC	6 cut(s)	57, 122, 124, 311, 502, 791
MroI	TCCGGA	1 cut(s)	940
MseI	TTAA	5 cut(s)	117, 153, 246, 878, 1005
MslI	CAYNNNNRTG	2 cut(s)	714, 914
MspI	CCGG	4 cut(s)	148, 371, 941, 987
MspR9I	CCNGG	2 cut(s)	399, 987
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	809, 833
NciI	CCSGG	1 cut(s)	987
NcoI	CCATGG	2 cut(s)	251, 744
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	2 cut(s)	525, 943
NlaIII	CATG	7 cut(s)	220, 255, 299, 349, 547, 702, 748
NlaIV	GGNNCC	3 cut(s)	313, 939, 945
NsbI	TGCGCA	1 cut(s)	186
NspI	RCATGY	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	738
PciI	ACATGT	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	589, 664
PkrI	GCNGC	1 cut(s)	802
PleI	GAGTC	1 cut(s)	1041
PpsI	GAGTC	1 cut(s)	1041
Ppu21I	YACGTR	1 cut(s)	265
PscI	ACATGT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	397
PspEI	GGTNACC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	313, 939, 945
PsuI	RGATCY	1 cut(s)	943
RsaI	GTAC	4 cut(s)	143, 200, 431, 895
RsaNI	GTAC	4 cut(s)	142, 199, 430, 894
RseI	CAYNNNNRTG	2 cut(s)	714, 914
SaqAI	TTAA	5 cut(s)	117, 153, 246, 878, 1005
SatI	GCNGC	1 cut(s)	801
Sau3AI	GATC	2 cut(s)	525, 943
SchI	GAGTC	1 cut(s)	1042
ScrFI	CCNGG	2 cut(s)	399, 987
SduI	GDGCHC	1 cut(s)	706
SetI	ASST	9 cut(s)	114, 182, 267, 366, 391, 494, 577, 681, 691
SfaNI	GCATC	2 cut(s)	132, 472
SfuI	TTCGAA	1 cut(s)	738
SmiMI	CAYNNNNRTG	2 cut(s)	714, 914
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
Sse9I	AATT	8 cut(s)	42, 74, 155, 328, 453, 510, 694, 992
SsiI	CCGC	2 cut(s)	810, 836
StyD4I	CCNGG	2 cut(s)	397, 985
StyI	CCWWGG	3 cut(s)	251, 315, 744
TaaI	ACNGT	5 cut(s)	36, 631, 645, 852, 893
TaiI	ACGT	2 cut(s)	182, 267
TaqI	TCGA	2 cut(s)	626, 738
TasI	AATT	8 cut(s)	42, 74, 155, 328, 453, 510, 694, 992
TatI	WGTACW	3 cut(s)	141, 198, 429
TfiI	GAWTC	2 cut(s)	589, 664
Tru1I	TTAA	5 cut(s)	117, 153, 246, 878, 1005
Tru9I	TTAA	5 cut(s)	117, 153, 246, 878, 1005
TseI	GCWGC	1 cut(s)	800
TspDTI	ATGAA	4 cut(s)	17, 602, 687, 1041
TspGWI	ACGGA	1 cut(s)	760
XapI	RAATTY	3 cut(s)	42, 155, 694
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.