Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

12060131 .. 12062858

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAAGGAGGAACAAACAAGATCTCTGTTTGGAATCTCTTTGTCTGATAAACCAACTTGGCAACAGTTTCTCATTTGCACTTCTGGTTTCTTTTTTGGTTATCTCGTTAACGGTGTTTGCGAGGAATATGTTTATAATCGTCTTCAATTTAGCTTTGGGTGGTATTTCACGTTTATACAAGGATTTGTCTACTTGTTTCTAATCTACCTTCAAGGCTTTACCACAAAGCATATAGTTAATCCGATGAGAACTTATGTCAAACTCTCTGCTGTTCTCATGGGTTCACATGGTTTAACCAAAGGATCTTTGGCTTATCTCAATTATCCAGCTCAAATCATGTTCAAATCCACCAAGGTGTTACCGGTGATGATAATGGGAGCGTTTATACCCGGTCTTAGAAGAAAATACCCAGTCCATGAATACATTTCAGCGTTCTTGCTTGTTCTTGGTTTGATCCTATTCACATTAGCCGATGCGCAAATGTCTCCAAATTTCAGTATGATTGGGATTATGATGATAACCGGTGCATTGATCATGGATGCTTTCTTGGGTAATCTGCAAGAAGCTATCTTCACAATGAATCCTGAGACAACTCAGATGGAGATGCTTTTCTGCTCAACAGTTGTTGGATTACCGTTCTTGTTCGTTCCCATGGTTTTAACCGGAGAGGTTTTTCGTGCGTGGACTGCGTGTGCACAACATCCGTATGTGTATGGAGTGCTTGTATTTGAAGCCATGGCCACATTTATCGGTCAAGTCTCCGTTCTCTCGCTTATTGCTCTCTTTGGAGCCGCCACAACTGCCTTGATAACAACGGCTAGGAAAGGGGTTACATTGTTGCTGTCGTATTTGATATTCACAAAGCCGTTAACGGAACAGCACGGATCAGGCTTGCTGTTGATAGCAATGGGGATTGTATTGAAGATGGTTCCAATGGATAGTAAAGCTCCGGCCAAGATTCCGGCGAGACCAGCGGTTAGGATCGCAGGAGGCGATGGTGATAGAGAAGAGGACGAAGAAAGGAAGTCATTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005338 GO:0005346 GO:0005459 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0072348 GO:0072530 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

345

Amino Acids

38.37

Weight (kDa)

8.56

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	22 - 310	9.8e-85	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
Acc16I	TGCGCA	1 cut(s)	477
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	2 cut(s)	792, 974
AclWI	GGATC	4 cut(s)	310, 448, 892, 989
AcoI	YGGCCR	2 cut(s)	738, 951
AcsI	RAATTY	1 cut(s)	490
AgeI	ACCGGT	2 cut(s)	361, 521
AgsI	TTSAA	5 cut(s)	146, 212, 343, 731, 922
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	4 cut(s)	153, 329, 566, 947
AluI	AGCT	4 cut(s)	153, 329, 566, 947
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	4 cut(s)	489, 581, 763, 961
Alw44I	GTGCAC	1 cut(s)	693
AlwI	GGATC	4 cut(s)	310, 448, 892, 989
AoxI	GGCC	2 cut(s)	738, 951
ApaLI	GTGCAC	1 cut(s)	693
ApoI	RAATTY	1 cut(s)	490
AsiGI	ACCGGT	2 cut(s)	361, 521
AspLEI	GCGC	1 cut(s)	478
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	376, 1010
BaeGI	GKGCMC	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	697
BccI	CCATC	3 cut(s)	592, 919, 989
BceAI	ACGGC	2 cut(s)	831, 850
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	4 cut(s)	489, 581, 763, 961
BfaI	CTAG	1 cut(s)	819
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	1 cut(s)	792
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	790, 930
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	3 cut(s)	463, 529, 594
BmuI	ACTGGG	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	961
BsaJI	CCNNGG	3 cut(s)	351, 651, 735
BsaWI	WCCGGW	3 cut(s)	361, 521, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bse118I	RCCGGY	2 cut(s)	361, 521
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	912
BseDI	CCNNGG	3 cut(s)	351, 651, 735
BseGI	GGATG	2 cut(s)	544, 700
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	2 cut(s)	576, 608
BseNI	ACTGG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	697
BshFI	GGCC	2 cut(s)	740, 953
BshTI	ACCGGT	2 cut(s)	361, 521
BsiHKAI	GWGCWC	1 cut(s)	697
BsiSI	CCGG	6 cut(s)	362, 390, 522, 663, 950, 962
BsmAI	GTCTC	4 cut(s)	489, 581, 763, 961
BsnI	GGCC	2 cut(s)	740, 953
Bso31I	GGTCTC	1 cut(s)	961
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	6 cut(s)	20, 302, 453, 531, 884, 981
Bsp19I	CCATGG	2 cut(s)	651, 735
BspACI	CCGC	2 cut(s)	792, 974
BspANI	GGCC	2 cut(s)	740, 953
BspCNI	CTCAG	2 cut(s)	577, 607
BspLI	GGNNCC	2 cut(s)	790, 930
BspPI	GGATC	4 cut(s)	310, 448, 892, 989
BspTNI	GGTCTC	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	912
BsrFI	RCCGGY	2 cut(s)	361, 521
BsrI	ACTGG	1 cut(s)	410
BssAI	RCCGGY	2 cut(s)	361, 521
BssECI	CCNNGG	3 cut(s)	351, 651, 735
BssMI	GATC	6 cut(s)	20, 302, 453, 531, 884, 981
BssT1I	CCWWGG	3 cut(s)	351, 651, 735
Bst4CI	ACNGT	4 cut(s)	66, 113, 622, 636
Bst6I	CTCTTC	1 cut(s)	1002
BstC8I	GCNNGC	1 cut(s)	893
BstDEI	CTNAG	3 cut(s)	395, 585, 594
BstDSI	CCRYGG	2 cut(s)	651, 735
BstF5I	GGATG	2 cut(s)	544, 700
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	6 cut(s)	23, 305, 456, 534, 887, 984
BstMAI	GTCTC	4 cut(s)	489, 581, 763, 961
BstMBI	GATC	6 cut(s)	20, 302, 453, 531, 884, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	686, 800, 971
BstSCI	CCNGG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	20, 302
BstYI	RGATCY	2 cut(s)	20, 302
BsuRI	GGCC	2 cut(s)	740, 953
BtgI	CCRYGG	2 cut(s)	651, 735
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	2 cut(s)	544, 700
Cac8I	GCNNGC	1 cut(s)	893
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	2 cut(s)	361, 521
CspAI	ACCGGT	2 cut(s)	361, 521
CviAII	CATG	7 cut(s)	277, 287, 337, 416, 535, 652, 736
DdeI	CTNAG	3 cut(s)	395, 585, 594
DpnI	GATC	6 cut(s)	22, 304, 455, 533, 886, 983
DpnII	GATC	6 cut(s)	20, 302, 453, 531, 884, 981
EaeI	YGGCCR	2 cut(s)	738, 951
Eam1104I	CTCTTC	1 cut(s)	1002
EarI	CTCTTC	1 cut(s)	1002
Eco130I	CCWWGG	3 cut(s)	351, 651, 735
Eco31I	GGTCTC	1 cut(s)	961
EcoT14I	CCWWGG	3 cut(s)	351, 651, 735
ErhI	CCWWGG	3 cut(s)	351, 651, 735
FaeI	CATG	7 cut(s)	280, 290, 340, 419, 538, 655, 739
FatI	CATG	7 cut(s)	276, 286, 336, 415, 534, 651, 735
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	792
FokI	GGATG	2 cut(s)	551, 687
Fsp4HI	GCNGC	1 cut(s)	792
FspBI	CTAG	1 cut(s)	819
FspI	TGCGCA	1 cut(s)	477
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	792
HaeIII	GGCC	2 cut(s)	740, 953
HapII	CCGG	6 cut(s)	362, 390, 522, 663, 950, 962
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	7 cut(s)	280, 290, 340, 419, 538, 655, 739
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	2 cut(s)	109, 870
HindII	GTYRAC	2 cut(s)	109, 870
HinfI	GANTC	3 cut(s)	33, 580, 958
HpaI	GTTAAC	2 cut(s)	109, 870
HpaII	CCGG	6 cut(s)	362, 390, 522, 663, 950, 962
HphI	GGTGA	2 cut(s)	376, 1010
Hpy166II	GTNNAC	6 cut(s)	109, 190, 284, 684, 695, 870
Hpy188I	TCNGA	3 cut(s)	46, 243, 597
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	6 cut(s)	109, 190, 284, 684, 695, 870
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	4 cut(s)	66, 113, 622, 636
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	78, 527, 559, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	686, 800, 971
HpyF3I	CTNAG	3 cut(s)	395, 585, 594
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	7 cut(s)	280, 290, 340, 419, 538, 655, 739
HspAI	GCGC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	531
KspAI	GTTAAC	2 cut(s)	109, 870
Kzo9I	GATC	6 cut(s)	20, 302, 453, 531, 884, 981
LmnI	GCTCC	3 cut(s)	377, 788, 952
LweI	GCATC	3 cut(s)	463, 529, 594
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	357, 829
MalI	GATC	6 cut(s)	22, 304, 455, 533, 886, 983
MboI	GATC	6 cut(s)	20, 302, 453, 531, 884, 981
MboII	GAAGA	6 cut(s)	134, 411, 562, 934, 1019, 1028
MflI	RGATCY	2 cut(s)	20, 302
MhlI	GDGCHC	1 cut(s)	697
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	3 cut(s)	146, 319, 490
MluNI	TGGCCA	1 cut(s)	740
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	4 cut(s)	115, 661, 983, 1003
Mox20I	TGGCCA	1 cut(s)	740
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	5 cut(s)	108, 237, 293, 659, 869
MslI	CAYNNNNRTG	2 cut(s)	353, 705
Msp20I	TGGCCA	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	6 cut(s)	362, 390, 522, 663, 950, 962
MspR9I	CCNGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	686, 800, 971
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	2 cut(s)	651, 735
NdeII	GATC	6 cut(s)	20, 302, 453, 531, 884, 981
NlaIII	CATG	7 cut(s)	280, 290, 340, 419, 538, 655, 739
NlaIV	GGNNCC	2 cut(s)	790, 930
NsbI	TGCGCA	1 cut(s)	477
OliI	CACNNNNGTG	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 990
PfeI	GAWTC	3 cut(s)	33, 580, 958
PinAI	ACCGGT	2 cut(s)	361, 521
PkrI	GCNGC	1 cut(s)	793
PsiI	TTATAA	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	790, 930
PsuI	RGATCY	2 cut(s)	20, 302
RseI	CAYNNNNRTG	2 cut(s)	353, 705
SaqAI	TTAA	5 cut(s)	108, 237, 293, 659, 869
SatI	GCNGC	1 cut(s)	792
Sau3AI	GATC	6 cut(s)	20, 302, 453, 531, 884, 981
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	697
SetI	ASST	8 cut(s)	155, 173, 210, 331, 357, 568, 672, 949
SfaNI	GCATC	3 cut(s)	463, 529, 594
SmiMI	CAYNNNNRTG	2 cut(s)	353, 705
Sse9I	AATT	3 cut(s)	146, 319, 490
SsiI	CCGC	2 cut(s)	792, 974
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	3 cut(s)	351, 651, 735
TaaI	ACNGT	4 cut(s)	66, 113, 622, 636
TaiI	ACGT	1 cut(s)	173
TaqII	GACCGA	1 cut(s)	740
TasI	AATT	3 cut(s)	146, 319, 490
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	3 cut(s)	33, 580, 958
Tru1I	TTAA	5 cut(s)	108, 237, 293, 659, 869
Tru9I	TTAA	5 cut(s)	108, 237, 293, 659, 869
TspDTI	ATGAA	3 cut(s)	17, 432, 593
TspGWI	ACGGA	4 cut(s)	693, 751, 887, 897
VneI	GTGCAC	1 cut(s)	693
XapI	RAATTY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.