Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

35328257 .. 35331525

Gene Structure 3269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0308800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCGGCAATAATGTCAACCAGAACAAACCTCTTTAGGCTTCTCACCGCCGGAACACCAATTTTAGGATTCTCAAATGTTCGGCTGCGTTATTCGTCGTCTGCTGCTGGGATTGGGTCGAGGCAGATAGACATGGGGGCCGGCGTGAAAGATTATGAAGACTATAGGAGGTCTCTTTACGGTGAAATCACGCACAAGGCTCTGCTTGTTGATGCTGTAGGCACCCTTGTTGTTCCTTCTCAGCCAATGGCTCAGATATATAGGAAGATAGGGGAGAAGTATGGGGTGGACTACTCAGAGGCTGAGATTTTGGATAGATACAGACGGGCTTACCAGCAGCCTTGGGGCAGATCTCGTCTCAGATATGTAAATGATGGGAGACCCTTTTGGCAACATATAGTCCGTTCTTCTACTGGTTGTTCAGATTCTCAGTACTTTGAAGAACTTTATAACTACTATACAACTAACAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAAAGTATTTGAAGCTCTAAGAAAAGCAGATGTCAAAGTAGCGGTTGTGTCAAATTTTGATACCCGGTTAAGACCTCTTTTGCAGGCTCTAAATTGTGAACATTGGTTTGATGCAGTAGCAGTGTCAGCAGAAGTAGAAGCCGAGAAGCCAAATCCCACAATATTTATTAAAGCTTGTGAGTTATTAGGGGTAAAACCTGAGGATGCTGTGCATGTGGGGGATGATCGTAGGAATGATATATGGGGTGCTAGAGATGCAGGTTGTGATGCTTGGCTTTGGGGAAGTGATGTTCATTCCTTTAAGGAGGTGGCTCAAAGGATAGGAGTCCACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

278

Amino Acids

31.49

Weight (kDa)

6.66

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	66 - 254	3.5e-23	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	146 - 256	6.3e-16	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	216 - 271	3.5e-09	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	749
AccB1I	GGYRCC	2 cut(s)	221, 477
AciI	CCGC	3 cut(s)	5, 48, 542
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	1 cut(s)	553
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	440, 512
AleI	CACNNNNGTG	1 cut(s)	483
AloI	GAACNNNNNNTCC	2 cut(s)	774, 806
AluBI	AGCT	2 cut(s)	515, 674
AluI	AGCT	2 cut(s)	515, 674
Alw26I	GTCTC	3 cut(s)	177, 362, 373
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	85, 104, 337
ApoI	RAATTY	1 cut(s)	553
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	2 cut(s)	37, 194
AxyI	CCTNAGG	1 cut(s)	699
BanI	GGYRCC	2 cut(s)	221, 477
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	72, 91, 349
BccI	CCATC	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	3 cut(s)	177, 362, 373
BfaI	CTAG	1 cut(s)	750
BfmI	CTRYAG	2 cut(s)	163, 216
BfuAI	ACCTGC	1 cut(s)	749
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	4 cut(s)	6, 86, 105, 338
BlsI	GCNGC	4 cut(s)	7, 87, 106, 339
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	3 cut(s)	139, 223, 479
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	6 cut(s)	202, 484, 601, 694, 745, 757
BpiI	GAAGAC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	565
BsaI	GGTCTC	2 cut(s)	177, 373
BsaJI	CCNNGG	1 cut(s)	341
BsaXI	ACNNNNNCTCC	1 cut(s)	816
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	418
Bse21I	CCTNAGG	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	2 cut(s)	709, 727
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	8 cut(s)	254, 266, 294, 309, 373, 443, 489, 690
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	3 cut(s)	72, 91, 349
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	2 cut(s)	221, 477
BsiSI	CCGG	3 cut(s)	51, 141, 565
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	3 cut(s)	177, 362, 373
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	2 cut(s)	177, 373
Bsp143I	GATC	3 cut(s)	350, 487, 724
BspACI	CCGC	3 cut(s)	5, 48, 542
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	8 cut(s)	253, 265, 295, 308, 372, 442, 490, 691
BspLI	GGNNCC	3 cut(s)	139, 223, 479
BspMI	ACCTGC	1 cut(s)	749
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	2 cut(s)	221, 477
BspTNI	GGTCTC	2 cut(s)	177, 373
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	3 cut(s)	350, 487, 724
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	142, 585
BstDEI	CTNAG	9 cut(s)	240, 252, 295, 303, 359, 429, 498, 518, 699
BstF5I	GGATG	2 cut(s)	709, 727
BstKTI	GATC	3 cut(s)	353, 490, 727
BstMAI	GTCTC	3 cut(s)	177, 362, 373
BstMBI	GATC	3 cut(s)	350, 487, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 755
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	563
BstSFI	CTRYAG	2 cut(s)	163, 216
BstV1I	GCAGC	3 cut(s)	72, 91, 349
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
Bsu36I	CCTNAGG	1 cut(s)	699
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	709, 727
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	627
BveI	ACCTGC	1 cut(s)	749
Cac8I	GCNNGC	2 cut(s)	142, 585
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	133, 713
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	9 cut(s)	240, 252, 295, 303, 359, 429, 498, 518, 699
DpnI	GATC	3 cut(s)	352, 489, 726
DpnII	GATC	3 cut(s)	350, 487, 724
Eco130I	CCWWGG	1 cut(s)	341
Eco31I	GGTCTC	2 cut(s)	177, 373
Eco81I	CCTNAGG	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	2 cut(s)	136, 716
FatI	CATG	2 cut(s)	132, 712
Fnu4HI	GCNGC	4 cut(s)	6, 86, 105, 338
FokI	GGATG	2 cut(s)	716, 734
Fsp4HI	GCNGC	4 cut(s)	6, 86, 105, 338
FspBI	CTAG	1 cut(s)	750
GluI	GCNGC	4 cut(s)	6, 86, 105, 338
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	51, 141, 565
Hin1II	CATG	2 cut(s)	136, 716
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	3 cut(s)	69, 425, 825
HpaII	CCGG	3 cut(s)	51, 141, 565
HphI	GGTGA	2 cut(s)	37, 194
Hpy166II	GTNNAC	4 cut(s)	18, 289, 599, 829
Hpy188I	TCNGA	4 cut(s)	255, 298, 362, 424
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	4 cut(s)	18, 289, 599, 829
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	4 cut(s)	583, 614, 712, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 755
HpyF3I	CTNAG	9 cut(s)	240, 252, 295, 303, 359, 429, 498, 518, 699
HpySE526I	ACGT	1 cut(s)	831
Hsp92II	CATG	2 cut(s)	136, 716
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	350, 487, 724
Lsp1109I	GCAGC	3 cut(s)	72, 91, 349
LweI	GCATC	6 cut(s)	202, 484, 601, 694, 745, 757
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	1 cut(s)	831
MalI	GATC	3 cut(s)	352, 489, 726
MboI	GATC	3 cut(s)	350, 487, 724
MboII	GAAGA	4 cut(s)	170, 277, 399, 452
MflI	RGATCY	1 cut(s)	350
MluCI	AATT	3 cut(s)	60, 553, 592
MlyI	GAGTC	1 cut(s)	834
MnlI	CCTC	8 cut(s)	41, 114, 162, 292, 491, 585, 694, 799
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	3 cut(s)	569, 669, 801
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	3 cut(s)	51, 141, 565
MspR9I	CCNGG	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	626, 755
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	3 cut(s)	350, 487, 724
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	136, 716
NlaIV	GGNNCC	3 cut(s)	139, 223, 479
NmeAIII	GCCGAG	1 cut(s)	667
NspI	RCATGY	1 cut(s)	716
OliI	CACNNNNGTG	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	69, 425
PkrI	GCNGC	4 cut(s)	7, 87, 106, 339
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
PsiI	TTATAA	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	139, 223, 479
PspPI	GGNCC	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	3 cut(s)	569, 669, 801
SatI	GCNGC	4 cut(s)	6, 86, 105, 338
Sau3AI	GATC	3 cut(s)	350, 487, 724
Sau96I	GGNCC	1 cut(s)	138
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	1 cut(s)	834
ScrFI	CCNGG	1 cut(s)	565
SfaNI	GCATC	6 cut(s)	202, 484, 601, 694, 745, 757
SfcI	CTRYAG	2 cut(s)	163, 216
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	3 cut(s)	60, 553, 592
SsiI	CCGC	3 cut(s)	5, 48, 542
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	1 cut(s)	750
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	60, 553, 592
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	69, 425
Tru1I	TTAA	3 cut(s)	569, 669, 801
Tru9I	TTAA	3 cut(s)	569, 669, 801
TscAI	CASTG	1 cut(s)	627
TseI	GCWGC	3 cut(s)	85, 104, 337
TspDTI	ATGAA	2 cut(s)	171, 782
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	627
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	716
XspI	CTAG	1 cut(s)	750
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.