Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003781.1

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

34232 .. 36162

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003781.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgaagaacaaagaacaagctcggtttctgtttgggatttcactctctgatagacccaaatggcagcaattcctgctttgctcttctgggtacttctttggttatctggttaatggtgtctgtgaggaatatgtgtataacaggctagaattcagttatgggtggtacttcacatttgtacaaggatttgtgtatctatttctgatttatcttctaggcttgaccaccaagcaaatggtgaacccatggaagacttatgtgaagctatctgctgtgcttatgggctctcatggacttaccaaaggctccttggcttttctcaactaccctgcacagctaatgttcaaatcaacaaaggttttgcctgtgatgataatgggagccttcataccaggtttgaggcggaagtacccacctcatgagtacgtttctgcaatccttctggtggtgggtctgatcctattcaccttagcggatgcacaaacatctcccaacttcagcgtgattggtgtggtgatatatgatagagatgttgttttgctttacagtagttggtctacctttcttggtgccaccaatgattttgacaggagaattattcaaagcgtggagttcatgttctcaggtaacttgccagttacaaaatcttttgattccagacttgttacattccttgcaagcctctcagttacacctaaccttttagaggaagacagaccagatgatgcctgtgatgcctaccatacatactttggtgtagcaggtataatagtaaatgcccagttggagcctctgcttttacataagatgcatataacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

273

Amino Acids

31.05

Weight (kDa)

8.31

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	557
AciI	CCGC	2 cut(s)	403, 473
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	481
AfaI	GTAC	5 cut(s)	92, 167, 180, 410, 425
AfiI	CCNNNNNNNGG	2 cut(s)	445, 706
AgsI	TTSAA	2 cut(s)	346, 602
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	602, 634
AluBI	AGCT	3 cut(s)	20, 265, 337
AluI	AGCT	3 cut(s)	20, 265, 337
AlwI	GGATC	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	250, 457, 526
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	257, 717
BbvI	GCAGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	393
BfaI	CTAG	2 cut(s)	146, 215
BfuAI	ACCTGC	1 cut(s)	752
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	4 cut(s)	307, 382, 571, 789
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	4 cut(s)	466, 715, 724, 798
BmuI	ACTGGG	1 cut(s)	775
BpiI	GAAGAC	2 cut(s)	257, 717
Bpu10I	CCTNAGC	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	245, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 706
Bse1I	ACTGG	2 cut(s)	635, 781
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	245, 309
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	445, 706
BseMII	CTCAG	2 cut(s)	636, 699
BseNI	ACTGG	2 cut(s)	635, 781
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	445, 706
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	2 cut(s)	403, 473
BspCNI	CTCAG	2 cut(s)	635, 698
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	4 cut(s)	307, 382, 571, 789
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	569
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	635, 781
BssECI	CCNNGG	2 cut(s)	245, 309
BssMI	GATC	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	245, 309
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	3 cut(s)	469, 622, 685
BstDSI	CCRYGG	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	704
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 734
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	2 cut(s)	257, 717
BstXI	CCANNNNNNTGG	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	1 cut(s)	679
CciI	TCATGA	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	5 cut(s)	91, 166, 179, 409, 424
CviAII	CATG	5 cut(s)	246, 290, 419, 616, 819
CviQI	GTAC	5 cut(s)	91, 166, 179, 409, 424
DdeI	CTNAG	3 cut(s)	469, 622, 685
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	245, 309
Eco24I	GRGCYC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	481
EcoNI	CCTNNNNNAGG	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	245, 309
EcoT22I	ATGCAT	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	245, 309
FaeI	CATG	5 cut(s)	249, 293, 422, 619, 822
FatI	CATG	5 cut(s)	245, 289, 418, 615, 818
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	146, 215
GluI	GCNGC	1 cut(s)	65
Hin1II	CATG	5 cut(s)	249, 293, 422, 619, 822
HinfI	GANTC	1 cut(s)	653
HphI	GGTGA	3 cut(s)	250, 457, 526
Hpy166II	GTNNAC	2 cut(s)	241, 558
Hpy188I	TCNGA	3 cut(s)	49, 204, 456
Hpy188III	TCNNGA	2 cut(s)	419, 657
Hpy8I	GTNNAC	2 cut(s)	241, 558
HpyAV	CCTTC	2 cut(s)	394, 449
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	5 cut(s)	332, 434, 479, 677, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 734
HpyF3I	CTNAG	3 cut(s)	469, 622, 685
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	5 cut(s)	249, 293, 422, 619, 822
Kzo9I	GATC	1 cut(s)	456
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	311, 380, 787
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	4 cut(s)	466, 715, 724, 798
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	2 cut(s)	146, 215
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	4 cut(s)	626, 637, 664, 688
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	5 cut(s)	16, 75, 203, 262, 722
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	3 cut(s)	68, 149, 594
MmeI	TCCRAC	1 cut(s)	765
MnlI	CCTC	6 cut(s)	118, 393, 426, 692, 700, 801
Mph1103I	ATGCAT	1 cut(s)	813
MseI	TTAA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	73, 734
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	5 cut(s)	249, 293, 422, 619, 822
NlaIV	GGNNCC	4 cut(s)	307, 382, 571, 789
NsiI	ATGCAT	1 cut(s)	813
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	653
PkrI	GCNGC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	307, 382, 571, 789
RsaI	GTAC	5 cut(s)	92, 167, 180, 410, 425
RsaNI	GTAC	5 cut(s)	91, 166, 179, 409, 424
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	287
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	4 cut(s)	466, 715, 724, 798
Sse9I	AATT	3 cut(s)	68, 149, 594
SsiI	CCGC	2 cut(s)	403, 473
SspMI	CTAG	2 cut(s)	146, 215
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	245, 309
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	1 cut(s)	429
TasI	AATT	3 cut(s)	68, 149, 594
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	653
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	17, 376, 604
XagI	CCTNNNNNAGG	1 cut(s)	704
XapI	RAATTY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	3 cut(s)	232, 307, 749
XmiI	GTMKAC	1 cut(s)	557
XspI	CTAG	2 cut(s)	146, 215
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.