Rw7G015720

UDP-galactose UDP-glucose transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
15949331 .. 15951541
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015720.1

Sequence Viewer

Length: 1077 bp
ATGAAGAACGAGGATCAGGCTAGGTTTCTGTTTGGGATTTCACTCTCTGATAGGCCTGTGTGGCAGCAATTCATTATTTGCTCGTCTGGGTTCTTCTTTGGTTACCTTGTCAATGGCGTTTGTGAGGAATACGTATATAATCGTCTACAATTCAGCTATGGATGGTACTTTACATTTGTACAAGGATTTGTATACCTGGGTCTCATATACCTTCAAGGTTTCACCACGCAGAAAATGGTGAATCCTTGGAAAACATATGTGAAGCTCTCTGCTGTTCTTATGGGTTCTCATGGATTGACTAAGGGATCCTTGGCCTGGCTCAATTATCCTGCACAGATTATGTTCAAGTCCACAAAGTCCTCCAAATCTCATGACATTGTGACACATATTCAGGTCCTGCCAGTGATGGTGATGGGGGCATTTGTTCCTGGATTGAGAAGGAAATACCCAATTCATGAATACATATCTGCAATACTGCTAGTGATTGGTCTCATTATTTTCACATTAGCAGATGCAAACACATCTCCCAACTTCAGCATATTGGGTGTGGTGATGATATCAGGCGCTCTAATTATGGACGCTTTCCTTGGGAATGTACAAGAAGCAATCTTTACCATGAATCCTGACACCACACAGACAGAGATGTTGTTCTGCTCAACAGTAGTTGGGTTGCCAATGCTACTTCCACCTATGATTCTTACTGGAGAACTGTTTAGGGCCTGGAATTCTTGCGCTGAGCATCCTTATGTGTATGGGGTGTTGATGTTTGAAGCCATCGCCACATTTGTTGGACAAGTATCTGTGCTATCCCTCATTGCACTTTTTGGAGCTGCCACCACTGCTATGGTTACAACTGCTAGAAAGGCGGTGACATTGTTGCTGTCGTACATAATATTCACAAAGCCAATGACAGAAGAGCATGGGACAGGGCTGCTGCTCATAGCCATGGGAATCATACTGAAGATGGTACCGGAAAACCAGGTTAACAAGCATGCAAAATCTTTCAAAGAAGTACTGATGAATGTCCCAGAAGCAAACGATATCGAGGAAGATGAAGAGAACAAGGCCTTGGTGTAA

Protein Analysis

358

Amino Acids

39.91

Weight (kDa)

6.17

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UAA PF08449 23 - 323 1.6e-76 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 967
AccB1I GGYRCC 1 cut(s) 967
AccI GTMKAC 2 cut(s) 145, 192
AciI CCGC 1 cut(s) 866
AclWI GGATC 3 cut(s) 21, 300, 313
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 2 cut(s) 517, 980
AfaI GTAC 6 cut(s) 167, 180, 597, 887, 969, 1014
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 4 cut(s) 215, 346, 770, 1006
AjnI CCWGG 5 cut(s) 195, 314, 427, 719, 978
AjuI GAANNNNNNNTTGG 1 cut(s) 1052
AluBI AGCT 3 cut(s) 156, 265, 830
AluI AGCT 3 cut(s) 156, 265, 830
Alw26I GTCTC 2 cut(s) 206, 494
AlwI GGATC 3 cut(s) 21, 300, 313
AlwNI CAGNNNCTG 1 cut(s) 397
AoxI GGCC 4 cut(s) 53, 312, 717, 1065
ApeKI GCWGC 4 cut(s) 64, 830, 931, 934
ApoI RAATTY 1 cut(s) 724
Asp718I GGTACC 1 cut(s) 967
AspLEI GCGC 2 cut(s) 566, 734
AspS9I GGNCC 2 cut(s) 394, 717
AsuHPI GGTGA 5 cut(s) 214, 250, 421, 562, 880
AvaII GGWCC 1 cut(s) 394
BamHI GGATCC 1 cut(s) 305
BanI GGYRCC 1 cut(s) 967
BbvI GCAGC 4 cut(s) 76, 817, 918, 921
BccI CCATC 5 cut(s) 156, 400, 406, 782, 958
BciT130I CCWGG 5 cut(s) 197, 316, 429, 721, 980
BcoDI GTCTC 2 cut(s) 206, 494
BfaI CTAG 3 cut(s) 21, 479, 858
BfoI RGCGCY 1 cut(s) 567
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 4 cut(s) 65, 831, 932, 935
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 4 cut(s) 66, 832, 933, 936
BmcAI AGTACT 1 cut(s) 1014
Bme1390I CCNGG 5 cut(s) 197, 316, 429, 721, 980
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 394, 717
BmiI GGNNCC 2 cut(s) 307, 969
BmrFI CCNGG 5 cut(s) 197, 316, 429, 721, 980
BmsI GCATC 2 cut(s) 502, 748
BpmI CTGGAG 1 cut(s) 723
Bpu1102I GCTNAGC 1 cut(s) 735
BsaAI YACGTR 1 cut(s) 133
BsaI GGTCTC 2 cut(s) 206, 494
BsaJI CCNNGG 6 cut(s) 196, 245, 309, 586, 945, 1068
BsaWI WCCGGW 1 cut(s) 970
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 2 cut(s) 401, 706
Bse3DI GCAATG 1 cut(s) 813
BseBI CCWGG 5 cut(s) 197, 316, 429, 721, 980
BseDI CCNNGG 6 cut(s) 196, 245, 309, 586, 945, 1068
BseGI GGATG 2 cut(s) 167, 739
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 2 cut(s) 401, 706
BseXI GCAGC 4 cut(s) 76, 817, 918, 921
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 4 cut(s) 55, 314, 719, 1067
BshNI GGYRCC 1 cut(s) 967
BsiSI CCGG 1 cut(s) 971
BslFI GGGAC 2 cut(s) 937, 1010
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 2 cut(s) 206, 494
BsmFI GGGAC 2 cut(s) 937, 1010
BsnI GGCC 4 cut(s) 55, 314, 719, 1067
Bso31I GGTCTC 2 cut(s) 206, 494
Bsp1407I TGTACA 2 cut(s) 178, 595
Bsp143I GATC 2 cut(s) 13, 305
Bsp1720I GCTNAGC 1 cut(s) 735
Bsp19I CCATGG 1 cut(s) 945
BspACI CCGC 1 cut(s) 866
BspANI GGCC 4 cut(s) 55, 314, 719, 1067
BspCNI CTCAG 1 cut(s) 727
BspHI TCATGA 2 cut(s) 370, 454
BspLI GGNNCC 2 cut(s) 307, 969
BspPI GGATC 3 cut(s) 21, 300, 313
BspQI GCTCTTC 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 967
BspTNI GGTCTC 2 cut(s) 206, 494
BsrDI GCAATG 1 cut(s) 813
BsrGI TGTACA 2 cut(s) 178, 595
BsrI ACTGG 2 cut(s) 401, 706
BssECI CCNNGG 6 cut(s) 196, 245, 309, 586, 945, 1068
BssMI GATC 2 cut(s) 13, 305
BssNAI GTATAC 1 cut(s) 193
BssT1I CCWWGG 5 cut(s) 245, 309, 586, 945, 1068
Bst1107I GTATAC 1 cut(s) 193
Bst2UI CCWGG 5 cut(s) 197, 316, 429, 721, 980
Bst4CI ACNGT 2 cut(s) 661, 711
Bst6I CTCTTC 2 cut(s) 909, 1050
BstAUI TGTACA 2 cut(s) 178, 595
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 993
BstDEI CTNAG 2 cut(s) 300, 735
BstDSI CCRYGG 1 cut(s) 945
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 2 cut(s) 167, 739
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 2 cut(s) 566, 734
BstKTI GATC 2 cut(s) 16, 308
BstMAI GTCTC 2 cut(s) 206, 494
BstMBI GATC 2 cut(s) 13, 305
BstMWI GCNNNNNNNGC 3 cut(s) 61, 839, 863
BstNI CCWGG 5 cut(s) 197, 316, 429, 721, 980
BstNSI RCATGY 1 cut(s) 995
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 5 cut(s) 195, 314, 427, 719, 978
BstSNI TACGTA 1 cut(s) 133
BstV1I GCAGC 4 cut(s) 76, 817, 918, 921
BstX2I RGATCY 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 844
BstYI RGATCY 1 cut(s) 305
BstZ17I GTATAC 1 cut(s) 193
BsuRI GGCC 4 cut(s) 55, 314, 719, 1067
BtgI CCRYGG 1 cut(s) 945
BtgZI GCGATG 1 cut(s) 760
BtsCI GGATG 2 cut(s) 167, 739
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 2 cut(s) 408, 837
Cac8I GCNNGC 1 cut(s) 993
CaiI CAGNNNCTG 1 cut(s) 397
CciI TCATGA 2 cut(s) 370, 454
CfoI GCGC 2 cut(s) 566, 734
Cfr13I GGNCC 2 cut(s) 394, 717
CseI GACGC 1 cut(s) 587
CsiI ACCWGGT 1 cut(s) 978
Csp6I GTAC 6 cut(s) 166, 179, 596, 886, 968, 1013
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 7 cut(s) 290, 371, 455, 616, 920, 946, 992
CviQI GTAC 6 cut(s) 166, 179, 596, 886, 968, 1013
DdeI CTNAG 2 cut(s) 300, 735
DpnI GATC 2 cut(s) 15, 307
DpnII GATC 2 cut(s) 13, 305
Eam1104I CTCTTC 2 cut(s) 909, 1050
EarI CTCTTC 2 cut(s) 909, 1050
Eco105I TACGTA 1 cut(s) 133
Eco130I CCWWGG 5 cut(s) 245, 309, 586, 945, 1068
Eco147I AGGCCT 2 cut(s) 55, 1067
Eco31I GGTCTC 2 cut(s) 206, 494
Eco32I GATATC 2 cut(s) 558, 1042
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 517, 980
Eco91I GGTNACC 1 cut(s) 101
EcoO109I RGGNCCY 2 cut(s) 394, 717
EcoO65I GGTNACC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 5 cut(s) 195, 314, 427, 719, 978
EcoRV GATATC 2 cut(s) 558, 1042
EcoT14I CCWWGG 5 cut(s) 245, 309, 586, 945, 1068
ErhI CCWWGG 5 cut(s) 245, 309, 586, 945, 1068
FaeI CATG 7 cut(s) 293, 374, 458, 619, 923, 949, 995
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 2 cut(s) 937, 1010
FatI CATG 7 cut(s) 289, 370, 454, 615, 919, 945, 991
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 2 cut(s) 145, 192
Fnu4HI GCNGC 4 cut(s) 65, 831, 932, 935
FokI GGATG 2 cut(s) 174, 726
Fsp4HI GCNGC 4 cut(s) 65, 831, 932, 935
FspBI CTAG 3 cut(s) 21, 479, 858
GlaI GCGC 2 cut(s) 565, 733
GluI GCNGC 4 cut(s) 65, 831, 932, 935
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 4 cut(s) 55, 314, 719, 1067
HapII CCGG 1 cut(s) 971
HgaI GACGC 1 cut(s) 587
HhaI GCGC 2 cut(s) 566, 734
Hin1II CATG 7 cut(s) 293, 374, 458, 619, 923, 949, 995
Hin6I GCGC 2 cut(s) 564, 732
HinP1I GCGC 2 cut(s) 564, 732
HincII GTYRAC 1 cut(s) 985
HindII GTYRAC 1 cut(s) 985
HinfI GANTC 4 cut(s) 241, 619, 694, 951
HpaI GTTAAC 1 cut(s) 985
HpaII CCGG 1 cut(s) 971
HphI GGTGA 5 cut(s) 214, 250, 421, 562, 880
Hpy166II GTNNAC 4 cut(s) 146, 193, 351, 985
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 3 cut(s) 371, 455, 623
Hpy8I GTNNAC 4 cut(s) 146, 193, 351, 985
HpyAV CCTTC 2 cut(s) 221, 432
HpyCH4III ACNGT 2 cut(s) 661, 711
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 332, 470, 515, 818, 995
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 839, 863
HpyF3I CTNAG 2 cut(s) 300, 735
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 7 cut(s) 293, 374, 458, 619, 923, 949, 995
HspAI GCGC 2 cut(s) 564, 732
KpnI GGTACC 1 cut(s) 971
KspAI GTTAAC 1 cut(s) 985
Kzo9I GATC 2 cut(s) 13, 305
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 1 cut(s) 827
Lsp1109I GCAGC 4 cut(s) 76, 817, 918, 921
LweI GCATC 2 cut(s) 502, 748
MabI ACCWGGT 1 cut(s) 978
MaeI CTAG 3 cut(s) 21, 479, 858
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 4 cut(s) 101, 379, 847, 868
MalI GATC 2 cut(s) 15, 307
MboI GATC 2 cut(s) 13, 305
MboII GAAGA 6 cut(s) 16, 85, 926, 973, 1061, 1067
MflI RGATCY 1 cut(s) 305
MluCI AATT 6 cut(s) 68, 149, 322, 450, 570, 724
MmeI TCCRAC 1 cut(s) 769
MnlI CCTC 5 cut(s) 4, 118, 370, 821, 1039
MseI TTAA 1 cut(s) 984
MslI CAYNNNNRTG 3 cut(s) 744, 842, 944
MspI CCGG 1 cut(s) 971
MspR9I CCNGG 5 cut(s) 197, 316, 429, 721, 980
MvaI CCWGG 5 cut(s) 197, 316, 429, 721, 980
MwoI GCNNNNNNNGC 3 cut(s) 61, 839, 863
NcoI CCATGG 1 cut(s) 945
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 13, 305
NlaIII CATG 7 cut(s) 293, 374, 458, 619, 923, 949, 995
NlaIV GGNNCC 2 cut(s) 307, 969
NmuCI GTSAC 2 cut(s) 379, 868
NspI RCATGY 1 cut(s) 995
PaeI GCATGC 1 cut(s) 995
PagI TCATGA 2 cut(s) 370, 454
PceI AGGCCT 2 cut(s) 55, 1067
PciSI GCTCTTC 1 cut(s) 909
PfeI GAWTC 4 cut(s) 241, 619, 694, 951
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 4 cut(s) 66, 832, 933, 936
Ppu21I YACGTR 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 5 cut(s) 195, 314, 427, 719, 978
PspEI GGTNACC 1 cut(s) 101
PspGI CCWGG 5 cut(s) 195, 314, 427, 719, 978
PspN4I GGNNCC 2 cut(s) 307, 969
PspPI GGNCC 2 cut(s) 394, 717
PspPPI RGGWCCY 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 397
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 6 cut(s) 167, 180, 597, 887, 969, 1014
RsaNI GTAC 6 cut(s) 166, 179, 596, 886, 968, 1013
RseI CAYNNNNRTG 3 cut(s) 744, 842, 944
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 1 cut(s) 984
SatI GCNGC 4 cut(s) 65, 831, 932, 935
Sau3AI GATC 2 cut(s) 13, 305
Sau96I GGNCC 2 cut(s) 394, 717
ScaI AGTACT 1 cut(s) 1014
ScrFI CCNGG 5 cut(s) 197, 316, 429, 721, 980
SexAI ACCWGGT 1 cut(s) 978
SfaNI GCATC 2 cut(s) 502, 748
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 3 cut(s) 744, 842, 944
SnaBI TACGTA 1 cut(s) 133
SphI GCATGC 1 cut(s) 995
Sse9I AATT 6 cut(s) 68, 149, 322, 450, 570, 724
SseBI AGGCCT 2 cut(s) 55, 1067
SsiI CCGC 1 cut(s) 866
SspI AATATT 1 cut(s) 894
SspMI CTAG 3 cut(s) 21, 479, 858
StuI AGGCCT 2 cut(s) 55, 1067
StyD4I CCNGG 5 cut(s) 195, 314, 427, 719, 978
StyI CCWWGG 5 cut(s) 245, 309, 586, 945, 1068
TaaI ACNGT 2 cut(s) 661, 711
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 1044
TasI AATT 6 cut(s) 68, 149, 322, 450, 570, 724
TatI WGTACW 3 cut(s) 178, 595, 1012
TfiI GAWTC 4 cut(s) 241, 619, 694, 951
Tru1I TTAA 1 cut(s) 984
Tru9I TTAA 1 cut(s) 984
TscAI CASTG 2 cut(s) 408, 844
TseFI GTSAC 2 cut(s) 379, 868
TseI GCWGC 4 cut(s) 64, 830, 931, 934
Tsp45I GTSAC 2 cut(s) 379, 868
TspDTI ATGAA 7 cut(s) 17, 61, 443, 471, 632, 1034, 1068
TspRI CASTG 2 cut(s) 408, 844
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 724
XceI RCATGY 1 cut(s) 995
XcmI CCANNNNNNNNNTGG 2 cut(s) 232, 841
XmiI GTMKAC 2 cut(s) 145, 192
XspI CTAG 3 cut(s) 21, 479, 858
ZrmI AGTACT 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.