Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

35333299 .. 35348352

Gene Structure 15054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0308900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGTTTTTGAAGTTGGGAAATGGAAGAAGGTTTCACTCTGCTATAGTCCTTAGGTTTCTTAGTAACATTGTGTATGACTGCTTGTTGGGAGCTGATGCTTTATGTGATTCTGGTGATTTGCATGATTGCAGAGAATATGCTCTCGTCAGTACTCACTCACCCCTCGCCAGACTCAAAGCCATCTACAGAGAAGCCCCACTTCCCCAATTGGTTCATGCCTTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGCGACCATGGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGTTGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAATCTCTCCCCCAGTGTTTGGCAGGCCTGAGCAGCCAAAAGAAAGAGCACCTACAATGGGCTCAACTGCCATGCCCTCTGCTGTATGTCAATGTTCCTCAAGAAATCAACAGGCTGAGGTGCGGGGTGAACTATCACGCTCTTAAATTTCTTCCTGAAATAGAGCAGATGGCTGATTTATTGGCATCAAGGATGAGAAACCGCACCGGAAGTTCCAATCCTTATATGGCCCTGCATCTTAGGTTTGAGAAGGGGATGGTCAGGTTGAAGAGATACTTGGAGATGAGGGGTGCTGATGGAGGACCGGCCTTGGAGAAGCTTATGTGCTTTGCTTGCATTTTGTGTAATAAGCTAAGCTACTGCAACCTTCTCTTTCCAGATTGCTTTGCTTGCATTTCAATTGGTTTTGCTAGGGTGGAAGCTTTCGTTTTTGTCAATGCTTTTGTTAGTTCATTTATGATTGGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

281

Amino Acids

31.85

Weight (kDa)

8.42

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	130 - 213	7.9e-13	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	394
AciI	CCGC	2 cut(s)	498, 577
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	394, 433
AgsI	TTSAA	7 cut(s)	13, 229, 253, 317, 334, 643, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AluBI	AGCT	7 cut(s)	95, 235, 364, 694, 727, 732, 797
AluI	AGCT	7 cut(s)	95, 235, 364, 694, 727, 732, 797
Alw21I	GWGCWC	1 cut(s)	426
AoxI	GGCC	3 cut(s)	400, 603, 681
ApeKI	GCWGC	2 cut(s)	361, 408
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	604, 677
AsuHPI	GGTGA	3 cut(s)	128, 153, 514
AvaII	GGWCC	1 cut(s)	677
AxyI	CCTNAGG	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	373, 420
BccI	CCATC	4 cut(s)	191, 538, 625, 665
BciVI	GTATCC	1 cut(s)	288
BfaI	CTAG	2 cut(s)	365, 786
BfmI	CTRYAG	2 cut(s)	45, 187
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	2 cut(s)	362, 409
BlpI	GCTNAGC	1 cut(s)	728
BlsI	GCNGC	2 cut(s)	363, 410
BmcAI	AGTACT	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	2 cut(s)	604, 677
BmrI	ACTGGG	1 cut(s)	382
BmsI	GCATC	3 cut(s)	88, 569, 619
BmuI	ACTGGG	1 cut(s)	382
Bpu10I	CCTNAGC	2 cut(s)	404, 491
Bpu1102I	GCTNAGC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	261, 684
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 433
Bse118I	RCCGGY	1 cut(s)	679
Bse1I	ACTGG	1 cut(s)	388
Bse21I	CCTNAGG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	261, 684
BseGI	GGATG	2 cut(s)	573, 636
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	394, 433
BseMII	CTCAG	3 cut(s)	254, 395, 482
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	373, 420
BshFI	GGCC	3 cut(s)	402, 605, 683
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	582, 680
BslI	CCNNNNNNNGG	2 cut(s)	394, 433
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	402, 605, 683
Bsp1286I	GDGCHC	2 cut(s)	426, 439
Bsp1720I	GCTNAGC	1 cut(s)	728
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	2 cut(s)	498, 577
BspANI	GGCC	3 cut(s)	402, 605, 683
BspCNI	CTCAG	3 cut(s)	253, 396, 483
BsrFI	RCCGGY	1 cut(s)	679
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	2 cut(s)	261, 684
BssT1I	CCWWGG	2 cut(s)	261, 684
Bst6I	CTCTTC	2 cut(s)	333, 638
BstC8I	GCNNGC	4 cut(s)	237, 400, 709, 766
BstDEI	CTNAG	7 cut(s)	53, 62, 240, 404, 491, 614, 728
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	573, 636
BstMWI	GCNNNNNNNGC	3 cut(s)	408, 708, 765
BstSFI	CTRYAG	2 cut(s)	45, 187
BstV1I	GCAGC	2 cut(s)	373, 420
Bsu36I	CCTNAGG	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	402, 605, 683
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	573, 636
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	4 cut(s)	237, 400, 709, 766
Cfr10I	RCCGGY	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	604, 677
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	4 cut(s)	125, 218, 262, 447
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	7 cut(s)	53, 62, 240, 404, 491, 614, 728
Eam1104I	CTCTTC	2 cut(s)	333, 638
EarI	CTCTTC	2 cut(s)	333, 638
Eco130I	CCWWGG	2 cut(s)	261, 684
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	677
Eco81I	CCTNAGG	1 cut(s)	53
EcoT14I	CCWWGG	2 cut(s)	261, 684
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	261, 684
FaeI	CATG	4 cut(s)	128, 221, 265, 450
FalI	AAGNNNNNCTT	4 cut(s)	186, 218, 635, 667
FatI	CATG	4 cut(s)	124, 217, 261, 446
FauI	CCCGC	1 cut(s)	491
Fnu4HI	GCNGC	2 cut(s)	362, 409
FokI	GGATG	2 cut(s)	580, 643
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	2 cut(s)	362, 409
FspBI	CTAG	2 cut(s)	365, 786
GluI	GCNGC	2 cut(s)	362, 409
HaeIII	GGCC	3 cut(s)	402, 605, 683
HapII	CCGG	2 cut(s)	582, 680
Hin1II	CATG	4 cut(s)	128, 221, 265, 450
HindIII	AAGCTT	2 cut(s)	692, 795
HinfI	GANTC	4 cut(s)	110, 174, 317, 377
HpaII	CCGG	2 cut(s)	582, 680
HphI	GGTGA	3 cut(s)	128, 153, 514
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	3 cut(s)	476, 530, 752
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	4 cut(s)	24, 223, 619, 752
HpyCH4V	TGCA	8 cut(s)	124, 132, 308, 361, 610, 711, 738, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	408, 708, 765
HpyF3I	CTNAG	7 cut(s)	53, 62, 240, 404, 491, 614, 728
Hsp92II	CATG	4 cut(s)	128, 221, 265, 450
LmnI	GCTCC	2 cut(s)	92, 232
Lsp1109I	GCAGC	2 cut(s)	373, 420
LweI	GCATC	3 cut(s)	88, 569, 619
MaeI	CTAG	2 cut(s)	365, 786
MaeIII	GTNAC	1 cut(s)	65
MboII	GAAGA	4 cut(s)	39, 350, 518, 655
MfeI	CAATTG	2 cut(s)	209, 774
MhlI	GDGCHC	2 cut(s)	426, 439
MluCI	AATT	4 cut(s)	209, 266, 521, 774
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	6 cut(s)	176, 462, 483, 486, 654, 668
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	3 cut(s)	269, 287, 519
MspI	CCGG	2 cut(s)	582, 680
MunI	CAATTG	2 cut(s)	209, 774
Mva1269I	GAATGC	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	408, 708, 765
NcoI	CCATGG	1 cut(s)	261
NlaIII	CATG	4 cut(s)	128, 221, 265, 450
PceI	AGGCCT	1 cut(s)	402
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	110, 317, 377
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	363, 410
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	604, 677
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	269, 287, 519
SatI	GCNGC	2 cut(s)	362, 409
Sau96I	GGNCC	2 cut(s)	604, 677
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	426, 439
SfaNI	GCATC	3 cut(s)	88, 569, 619
SfcI	CTRYAG	2 cut(s)	45, 187
SinI	GGWCC	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	4 cut(s)	209, 266, 521, 774
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	2 cut(s)	498, 577
SspMI	CTAG	2 cut(s)	365, 786
StuI	AGGCCT	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	261, 684
TasI	AATT	4 cut(s)	209, 266, 521, 774
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	110, 317, 377
Tru1I	TTAA	3 cut(s)	269, 287, 519
Tru9I	TTAA	3 cut(s)	269, 287, 519
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	2 cut(s)	361, 408
TspDTI	ATGAA	2 cut(s)	206, 816
TspRI	CASTG	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	2 cut(s)	289, 598
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	365, 786
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.