Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

16838185 .. 16841311

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG181900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAGAACGAGGATCAAGCTAGGTTTCTGTTTGGGATTTCACTCTCTGATAGACCTGTGTGGCAGCAATTCATTATTTGCTCGTCTGGGTTCTTCTTTGGTTACCTTGTCAATGGCGTTTGTGAGGAATACGTATATAATCGTCTACAATTCAGCTATGGATGGTACTTTACATTTGTACAAGGATTTGTATACCTGGGTCTCATATACCTTCAAGGTTTCACCACGCAGAAAATGGTGAATCCTTGGAAAACATATGTGAAGCTCTCTGCTGTTCTTATGGGTTCTCATGGATTGACTAAGGGATCCTTGGCCTGGCTCAATTATCCTGCACAGATTATGTTCAAGTCCACAAAGGTCCTGCCAGTGATGGTGATGGGGGCATTTGTTCCTGGATTGAGAAGGAAATACCCAATTCATGAATACATATCTGCAATACTGCTAGTGATTGGTCTCATTATTTTCACATTAGCAGATGCAAACACATCTCCCAACTTCAGCATATTGGGTGTGGTGATGATATCAGGCGCTCTAATTATGGACGCTTTCCTTGGGAATGTACAAGAAGCAATCTTTACCATGAATCCTGACACCACACAGACAGAGATGTTGTTCTGCTCAACAGTAGTTGGGTTGCCAATGCTACTTCCACCTATGATTCTTACTGGAGAACTGTTTAGGGCCTGGAATTCTTGCGCTGAGCATCCTTATGTGTATGGGGTGTTGATGTTTGAAGCCATCGCCACATTTGTTGGACAAGTATCTGTGCTATCCCTCATTGCACTTTTTGGAGCTGCCACCACTGCTATGGTTACAACTGCTAGAAAGGCGGTGACATTGTTGCTGTCGTACATAATATTCACAAAGCCAATGACAGAAGAGCATGGGACAGGGCTACTGCTCATAGCCATGGGAATCATACTGAAGATGGTACCGGAAAACCAGGTTAACAAGCATGCAAAATCTTTCAAAGAAGTACTGATGAATGTCCCAGAAGCAAACGATATCGAGGAAGATGAAGAGAACAAGGCCTTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

346

Amino Acids

38.58

Weight (kDa)

5.98

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 311	1.6e-82	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	931
AccB1I	GGYRCC	1 cut(s)	931
AccI	GTMKAC	2 cut(s)	145, 192
AciI	CCGC	1 cut(s)	830
AclWI	GGATC	3 cut(s)	21, 300, 313
AcsI	RAATTY	1 cut(s)	688
AcuI	CTGAAG	2 cut(s)	481, 944
AfaI	GTAC	6 cut(s)	167, 180, 561, 851, 933, 978
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	4 cut(s)	215, 346, 734, 970
AjnI	CCWGG	5 cut(s)	195, 314, 391, 683, 942
AjuI	GAANNNNNNNTTGG	1 cut(s)	1016
AluBI	AGCT	4 cut(s)	20, 156, 265, 794
AluI	AGCT	4 cut(s)	20, 156, 265, 794
Alw26I	GTCTC	2 cut(s)	206, 458
AlwI	GGATC	3 cut(s)	21, 300, 313
AoxI	GGCC	3 cut(s)	312, 681, 1029
ApeKI	GCWGC	2 cut(s)	64, 794
ApoI	RAATTY	1 cut(s)	688
Asp718I	GGTACC	1 cut(s)	931
AspLEI	GCGC	2 cut(s)	530, 698
AspS9I	GGNCC	2 cut(s)	358, 681
AsuHPI	GGTGA	5 cut(s)	214, 250, 385, 526, 844
AvaII	GGWCC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	931
BbvI	GCAGC	2 cut(s)	76, 781
BccI	CCATC	5 cut(s)	156, 364, 370, 746, 922
BciT130I	CCWGG	5 cut(s)	197, 316, 393, 685, 944
BcoDI	GTCTC	2 cut(s)	206, 458
BfaI	CTAG	3 cut(s)	21, 443, 822
BfoI	RGCGCY	1 cut(s)	531
BisI	GCNGC	2 cut(s)	65, 795
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	2 cut(s)	66, 796
BmcAI	AGTACT	1 cut(s)	978
Bme1390I	CCNGG	5 cut(s)	197, 316, 393, 685, 944
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	358, 681
BmiI	GGNNCC	2 cut(s)	307, 933
BmrFI	CCNGG	5 cut(s)	197, 316, 393, 685, 944
BmsI	GCATC	2 cut(s)	466, 712
BpmI	CTGGAG	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	133
BsaI	GGTCTC	2 cut(s)	206, 458
BsaJI	CCNNGG	6 cut(s)	196, 245, 309, 550, 909, 1032
BsaWI	WCCGGW	1 cut(s)	934
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	365, 670
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	5 cut(s)	197, 316, 393, 685, 944
BseDI	CCNNGG	6 cut(s)	196, 245, 309, 550, 909, 1032
BseGI	GGATG	2 cut(s)	167, 703
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	2 cut(s)	365, 670
BseXI	GCAGC	2 cut(s)	76, 781
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	314, 683, 1031
BshNI	GGYRCC	1 cut(s)	931
BsiSI	CCGG	1 cut(s)	935
BslFI	GGGAC	2 cut(s)	901, 974
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	2 cut(s)	206, 458
BsmFI	GGGAC	2 cut(s)	901, 974
BsnI	GGCC	3 cut(s)	314, 683, 1031
Bso31I	GGTCTC	2 cut(s)	206, 458
Bsp1407I	TGTACA	2 cut(s)	178, 559
Bsp143I	GATC	2 cut(s)	13, 305
Bsp1720I	GCTNAGC	1 cut(s)	699
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	1 cut(s)	830
BspANI	GGCC	3 cut(s)	314, 683, 1031
BspCNI	CTCAG	1 cut(s)	691
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	307, 933
BspPI	GGATC	3 cut(s)	21, 300, 313
BspQI	GCTCTTC	1 cut(s)	873
BspT107I	GGYRCC	1 cut(s)	931
BspTNI	GGTCTC	2 cut(s)	206, 458
BsrDI	GCAATG	1 cut(s)	777
BsrGI	TGTACA	2 cut(s)	178, 559
BsrI	ACTGG	2 cut(s)	365, 670
BssECI	CCNNGG	6 cut(s)	196, 245, 309, 550, 909, 1032
BssMI	GATC	2 cut(s)	13, 305
BssNAI	GTATAC	1 cut(s)	193
BssT1I	CCWWGG	5 cut(s)	245, 309, 550, 909, 1032
Bst1107I	GTATAC	1 cut(s)	193
Bst2UI	CCWGG	5 cut(s)	197, 316, 393, 685, 944
Bst4CI	ACNGT	2 cut(s)	625, 675
Bst6I	CTCTTC	2 cut(s)	873, 1014
BstAUI	TGTACA	2 cut(s)	178, 559
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	2 cut(s)	300, 699
BstDSI	CCRYGG	1 cut(s)	909
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	167, 703
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	2 cut(s)	530, 698
BstKTI	GATC	2 cut(s)	16, 308
BstMAI	GTCTC	2 cut(s)	206, 458
BstMBI	GATC	2 cut(s)	13, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 827
BstNI	CCWGG	5 cut(s)	197, 316, 393, 685, 944
BstNSI	RCATGY	1 cut(s)	959
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	5 cut(s)	195, 314, 391, 683, 942
BstSNI	TACGTA	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	76, 781
BstX2I	RGATCY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	305
BstZ17I	GTATAC	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	314, 683, 1031
BtgI	CCRYGG	1 cut(s)	909
BtgZI	GCGATG	1 cut(s)	724
BtsCI	GGATG	2 cut(s)	167, 703
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	2 cut(s)	372, 801
Cac8I	GCNNGC	1 cut(s)	957
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	530, 698
Cfr13I	GGNCC	2 cut(s)	358, 681
CseI	GACGC	1 cut(s)	551
CsiI	ACCWGGT	1 cut(s)	942
Csp6I	GTAC	6 cut(s)	166, 179, 560, 850, 932, 977
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	6 cut(s)	290, 419, 580, 884, 910, 956
CviQI	GTAC	6 cut(s)	166, 179, 560, 850, 932, 977
DdeI	CTNAG	2 cut(s)	300, 699
DpnI	GATC	2 cut(s)	15, 307
DpnII	GATC	2 cut(s)	13, 305
Eam1104I	CTCTTC	2 cut(s)	873, 1014
EarI	CTCTTC	2 cut(s)	873, 1014
Eco105I	TACGTA	1 cut(s)	133
Eco130I	CCWWGG	5 cut(s)	245, 309, 550, 909, 1032
Eco147I	AGGCCT	1 cut(s)	1031
Eco31I	GGTCTC	2 cut(s)	206, 458
Eco32I	GATATC	2 cut(s)	522, 1006
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	481, 944
Eco91I	GGTNACC	1 cut(s)	101
EcoO109I	RGGNCCY	2 cut(s)	358, 681
EcoO65I	GGTNACC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	688
EcoRII	CCWGG	5 cut(s)	195, 314, 391, 683, 942
EcoRV	GATATC	2 cut(s)	522, 1006
EcoT14I	CCWWGG	5 cut(s)	245, 309, 550, 909, 1032
ErhI	CCWWGG	5 cut(s)	245, 309, 550, 909, 1032
FaeI	CATG	6 cut(s)	293, 422, 583, 887, 913, 959
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	2 cut(s)	901, 974
FatI	CATG	6 cut(s)	289, 418, 579, 883, 909, 955
FauNDI	CATATG	1 cut(s)	256
FblI	GTMKAC	2 cut(s)	145, 192
Fnu4HI	GCNGC	2 cut(s)	65, 795
FokI	GGATG	2 cut(s)	174, 690
Fsp4HI	GCNGC	2 cut(s)	65, 795
FspBI	CTAG	3 cut(s)	21, 443, 822
GlaI	GCGC	2 cut(s)	529, 697
GluI	GCNGC	2 cut(s)	65, 795
GsuI	CTGGAG	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	314, 683, 1031
HapII	CCGG	1 cut(s)	935
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	2 cut(s)	530, 698
Hin1II	CATG	6 cut(s)	293, 422, 583, 887, 913, 959
Hin6I	GCGC	2 cut(s)	528, 696
HinP1I	GCGC	2 cut(s)	528, 696
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	4 cut(s)	241, 583, 658, 915
HpaI	GTTAAC	1 cut(s)	949
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	5 cut(s)	214, 250, 385, 526, 844
Hpy166II	GTNNAC	4 cut(s)	146, 193, 351, 949
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	419, 587
Hpy8I	GTNNAC	4 cut(s)	146, 193, 351, 949
HpyAV	CCTTC	2 cut(s)	221, 396
HpyCH4III	ACNGT	2 cut(s)	625, 675
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	332, 434, 479, 782, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 827
HpyF3I	CTNAG	2 cut(s)	300, 699
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	293, 422, 583, 887, 913, 959
HspAI	GCGC	2 cut(s)	528, 696
KpnI	GGTACC	1 cut(s)	935
KspAI	GTTAAC	1 cut(s)	949
Kzo9I	GATC	2 cut(s)	13, 305
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	1 cut(s)	791
Lsp1109I	GCAGC	2 cut(s)	76, 781
LweI	GCATC	2 cut(s)	466, 712
MabI	ACCWGGT	1 cut(s)	942
MaeI	CTAG	3 cut(s)	21, 443, 822
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	101, 811, 832
MalI	GATC	2 cut(s)	15, 307
MboI	GATC	2 cut(s)	13, 305
MboII	GAAGA	6 cut(s)	16, 85, 890, 937, 1025, 1031
MflI	RGATCY	1 cut(s)	305
MluCI	AATT	6 cut(s)	68, 149, 322, 414, 534, 688
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	4 cut(s)	4, 118, 785, 1003
MseI	TTAA	1 cut(s)	948
MslI	CAYNNNNRTG	3 cut(s)	708, 806, 908
MspI	CCGG	1 cut(s)	935
MspR9I	CCNGG	5 cut(s)	197, 316, 393, 685, 944
MvaI	CCWGG	5 cut(s)	197, 316, 393, 685, 944
MwoI	GCNNNNNNNGC	2 cut(s)	803, 827
NcoI	CCATGG	1 cut(s)	909
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	13, 305
NlaIII	CATG	6 cut(s)	293, 422, 583, 887, 913, 959
NlaIV	GGNNCC	2 cut(s)	307, 933
NmuCI	GTSAC	1 cut(s)	832
NspI	RCATGY	1 cut(s)	959
PaeI	GCATGC	1 cut(s)	959
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	1031
PciSI	GCTCTTC	1 cut(s)	873
PfeI	GAWTC	4 cut(s)	241, 583, 658, 915
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	66, 796
Ppu21I	YACGTR	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	5 cut(s)	195, 314, 391, 683, 942
PspEI	GGTNACC	1 cut(s)	101
PspGI	CCWGG	5 cut(s)	195, 314, 391, 683, 942
PspN4I	GGNNCC	2 cut(s)	307, 933
PspPI	GGNCC	2 cut(s)	358, 681
PspPPI	RGGWCCY	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	6 cut(s)	167, 180, 561, 851, 933, 978
RsaNI	GTAC	6 cut(s)	166, 179, 560, 850, 932, 977
RseI	CAYNNNNRTG	3 cut(s)	708, 806, 908
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	1 cut(s)	948
SatI	GCNGC	2 cut(s)	65, 795
Sau3AI	GATC	2 cut(s)	13, 305
Sau96I	GGNCC	2 cut(s)	358, 681
ScaI	AGTACT	1 cut(s)	978
ScrFI	CCNGG	5 cut(s)	197, 316, 393, 685, 944
SexAI	ACCWGGT	1 cut(s)	942
SfaNI	GCATC	2 cut(s)	466, 712
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	3 cut(s)	708, 806, 908
SnaBI	TACGTA	1 cut(s)	133
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	6 cut(s)	68, 149, 322, 414, 534, 688
SseBI	AGGCCT	1 cut(s)	1031
SsiI	CCGC	1 cut(s)	830
SspI	AATATT	1 cut(s)	858
SspMI	CTAG	3 cut(s)	21, 443, 822
StuI	AGGCCT	1 cut(s)	1031
StyD4I	CCNGG	5 cut(s)	195, 314, 391, 683, 942
StyI	CCWWGG	5 cut(s)	245, 309, 550, 909, 1032
TaaI	ACNGT	2 cut(s)	625, 675
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	1008
TasI	AATT	6 cut(s)	68, 149, 322, 414, 534, 688
TatI	WGTACW	3 cut(s)	178, 559, 976
TfiI	GAWTC	4 cut(s)	241, 583, 658, 915
Tru1I	TTAA	1 cut(s)	948
Tru9I	TTAA	1 cut(s)	948
TscAI	CASTG	2 cut(s)	372, 808
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	2 cut(s)	64, 794
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	7 cut(s)	17, 61, 407, 435, 596, 998, 1032
TspRI	CASTG	2 cut(s)	372, 808
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	688
XceI	RCATGY	1 cut(s)	959
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 805
XmiI	GTMKAC	2 cut(s)	145, 192
XspI	CTAG	3 cut(s)	21, 443, 822
ZrmI	AGTACT	1 cut(s)	978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.