Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

10036495 .. 10039968

Gene Structure 3474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G089700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAAGAACCAGGATCAAGCTAGGTTCCTGTTTGGGATTTCACTCTCTGATAGGCCCAGGTGGCAACAGTTCCTCATTTGCTCTTCTGGGTTCTTCTTTGGTTACCTCGTTAATGGCATTTGCGAGGAATACGTGTATAATCGTCTCCAATTCAGCTATGGATGGTACTTCACCTTTGTACAAGGTTTTGTGTATATCGCTCTCATATACCTTCAAGGTTTCACCACCAAGCAAATTGTGAACCCATGGAAGACATATGTGAAGCTCTCGGCCGTTCTTATGGGTTCTCAAGGATTGACCAAGGGATCGTTGGCTTGGCTCAATTATCCTGCACAGATAATGTTCAAATCAACAAAGGTACTGCCTGTGATGTTGATGGGTGCGTTTGTTCCTGGATTGAGAAGGAGATACCCAATTCATGAATACATCTCAGCAATGTTTCTAGTAATTGGTTTGATCCTTTTCACCTTAGCAGATGCACAGACATCTCCCAATTTTAGCATAGCTGGTGTGATAATGATATCGGGTTCTCTAGTCATGGATGCCTTTTTGGGTAACCTGCAAGAAGCAATCTTTACCGTAAATCCGGATACCTCACAGACAGAGATGTTGTTCTGCTCAACAGTTGTTGGTTTGCCATTTCTACTTCCACCCATGATTCTTACAGGAGAACTGTTTAAGGCCTGGAATTCTTGTTATGAGCATCCTTATGTGTACGGCGTGTTAGTGTTCGAAGCCATGGCCACATATGTTGGCCAAGTATCTGTCCTATCTCTCATTGCCCTTTTTGGAGCTGCCACCACTGCCATGATTACAACTGCTAGAAAGGCAGTCACATTGTTGCTGTCGTATATGATATTCACAAAGCCCTTGACAGACCAGCATGGAACAGGCCTGCTGCTTATAGCCATGGGGATCATGATGAAGATGTTGCCAGAACACAAAGGCCATGGCAGAAGTGCTGTTGCCAAACCTGGAAGATCTTTGAAAGCAGGGAAGAGTCCAGTGCCGAACGAAAAAAGATCAGAAGTTGAAGAGGAAAGGTCTTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

352

Amino Acids

39.14

Weight (kDa)

9.21

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	567
AccIII	TCCGGA	1 cut(s)	586
AclWI	GGATC	4 cut(s)	21, 313, 451, 923
AcoI	YGGCCR	3 cut(s)	270, 741, 754
AcsI	RAATTY	1 cut(s)	688
AfaI	GTAC	4 cut(s)	167, 180, 360, 716
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	4 cut(s)	215, 346, 988, 1034
AjnI	CCWGG	5 cut(s)	9, 56, 391, 683, 973
AluBI	AGCT	5 cut(s)	20, 156, 265, 506, 794
AluI	AGCT	5 cut(s)	20, 156, 265, 506, 794
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	4 cut(s)	21, 313, 451, 923
Aor13HI	TCCGGA	1 cut(s)	586
AoxI	GGCC	7 cut(s)	53, 270, 681, 741, 754, 892, 946
ApeKI	GCWGC	2 cut(s)	794, 898
ApoI	RAATTY	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	3 cut(s)	163, 214, 457
AsuII	TTCGAA	1 cut(s)	732
BalI	TGGCCA	2 cut(s)	743, 756
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	781, 885
BccI	CCATC	2 cut(s)	156, 370
BceAI	ACGGC	2 cut(s)	257, 733
BciT130I	CCWGG	5 cut(s)	11, 58, 393, 685, 975
BciVI	GTATCC	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	4 cut(s)	21, 443, 533, 822
BfuAI	ACCTGC	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	583
BglI	GCCNNNNNGGC	1 cut(s)	61
BglII	AGATCT	1 cut(s)	980
BisI	GCNGC	2 cut(s)	795, 899
BlsI	GCNGC	2 cut(s)	796, 900
Bme1390I	CCNGG	5 cut(s)	11, 58, 393, 685, 975
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	5 cut(s)	11, 58, 393, 685, 975
BmsI	GCATC	3 cut(s)	466, 532, 712
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	469
Bpu14I	TTCGAA	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	6 cut(s)	56, 245, 300, 738, 909, 949
BsaWI	WCCGGW	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	1004
Bse3DI	GCAATG	2 cut(s)	441, 777
BseAI	TCCGGA	1 cut(s)	586
BseBI	CCWGG	5 cut(s)	11, 58, 393, 685, 975
BseDI	CCNNGG	6 cut(s)	56, 245, 300, 738, 909, 949
BseGI	GGATG	3 cut(s)	167, 547, 703
BseMI	GCAATG	2 cut(s)	441, 777
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	1004
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	781, 885
BsgI	GTGCAG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	7 cut(s)	55, 272, 683, 743, 756, 894, 948
BsiEI	CGRYCG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	587
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	7 cut(s)	55, 272, 683, 743, 756, 894, 948
Bsp119I	TTCGAA	1 cut(s)	732
Bsp13I	TCCGGA	1 cut(s)	586
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	6 cut(s)	13, 305, 456, 915, 980, 1022
Bsp19I	CCATGG	4 cut(s)	245, 738, 909, 949
BspANI	GGCC	7 cut(s)	55, 272, 683, 743, 756, 894, 948
BspCNI	CTCAG	1 cut(s)	443
BspEI	TCCGGA	1 cut(s)	586
BspHI	TCATGA	2 cut(s)	418, 918
BspLI	GGNNCC	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	4 cut(s)	21, 313, 451, 923
BspQI	GCTCTTC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	732
BsrDI	GCAATG	2 cut(s)	441, 777
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	1004
BssECI	CCNNGG	6 cut(s)	56, 245, 300, 738, 909, 949
BssMI	GATC	6 cut(s)	13, 305, 456, 915, 980, 1022
BssT1I	CCWWGG	5 cut(s)	245, 300, 738, 909, 949
Bst2UI	CCWGG	5 cut(s)	11, 58, 393, 685, 975
Bst4CI	ACNGT	4 cut(s)	69, 580, 625, 675
Bst6I	CTCTTC	3 cut(s)	88, 992, 1029
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	732
BstC8I	GCNNGC	1 cut(s)	896
BstDEI	CTNAG	2 cut(s)	430, 469
BstDSI	CCRYGG	4 cut(s)	245, 738, 909, 949
BstEII	GGTNACC	2 cut(s)	101, 554
BstF5I	GGATG	3 cut(s)	167, 547, 703
BstKTI	GATC	6 cut(s)	16, 308, 459, 918, 983, 1025
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	6 cut(s)	13, 305, 456, 915, 980, 1022
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 803, 827
BstNI	CCWGG	5 cut(s)	11, 58, 393, 685, 975
BstPI	GGTNACC	2 cut(s)	101, 554
BstSCI	CCNGG	5 cut(s)	9, 56, 391, 683, 973
BstV1I	GCAGC	2 cut(s)	781, 885
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	980
BstYI	RGATCY	1 cut(s)	980
BstZI	CGGCCG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	7 cut(s)	55, 272, 683, 743, 756, 894, 948
BtgI	CCRYGG	4 cut(s)	245, 738, 909, 949
BtsCI	GGATG	3 cut(s)	167, 547, 703
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	2 cut(s)	801, 1011
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	896
CciI	TCATGA	2 cut(s)	418, 918
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	4 cut(s)	166, 179, 359, 715
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviQI	GTAC	4 cut(s)	166, 179, 359, 715
DdeI	CTNAG	2 cut(s)	430, 469
DpnI	GATC	6 cut(s)	15, 307, 458, 917, 982, 1024
DpnII	GATC	6 cut(s)	13, 305, 456, 915, 980, 1022
EaeI	YGGCCR	3 cut(s)	270, 741, 754
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	3 cut(s)	88, 992, 1029
EarI	CTCTTC	3 cut(s)	88, 992, 1029
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	5 cut(s)	245, 300, 738, 909, 949
Eco147I	AGGCCT	2 cut(s)	683, 894
Eco32I	GATATC	1 cut(s)	522
Eco52I	CGGCCG	1 cut(s)	270
Eco91I	GGTNACC	2 cut(s)	101, 554
EcoO65I	GGTNACC	2 cut(s)	101, 554
EcoRI	GAATTC	1 cut(s)	688
EcoRII	CCWGG	5 cut(s)	9, 56, 391, 683, 973
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	5 cut(s)	245, 300, 738, 909, 949
ErhI	CCWWGG	5 cut(s)	245, 300, 738, 909, 949
Esp3I	CGTCTC	1 cut(s)	149
FauNDI	CATATG	2 cut(s)	256, 748
Fnu4HI	GCNGC	2 cut(s)	795, 899
FokI	GGATG	3 cut(s)	174, 554, 690
Fsp4HI	GCNGC	2 cut(s)	795, 899
FspBI	CTAG	4 cut(s)	21, 443, 533, 822
GluI	GCNGC	2 cut(s)	795, 899
HaeIII	GGCC	7 cut(s)	55, 272, 683, 743, 756, 894, 948
HapII	CCGG	1 cut(s)	587
HinfI	GANTC	2 cut(s)	658, 1000
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	3 cut(s)	163, 214, 457
Hpy166II	GTNNAC	2 cut(s)	241, 715
Hpy188I	TCNGA	2 cut(s)	49, 1027
Hpy188III	TCNNGA	3 cut(s)	419, 587, 919
Hpy8I	GTNNAC	2 cut(s)	241, 715
HpyAV	CCTTC	2 cut(s)	221, 396
HpyCH4III	ACNGT	4 cut(s)	69, 580, 625, 675
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	332, 479, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 803, 827
HpyF3I	CTNAG	2 cut(s)	430, 469
HpySE526I	ACGT	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	586
Kzo9I	GATC	6 cut(s)	13, 305, 456, 915, 980, 1022
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	791
Lsp1109I	GCAGC	2 cut(s)	781, 885
LweI	GCATC	3 cut(s)	466, 532, 712
MaeI	CTAG	4 cut(s)	21, 443, 533, 822
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	101, 554, 832
MalI	GATC	6 cut(s)	15, 307, 458, 917, 982, 1024
MboI	GATC	6 cut(s)	13, 305, 456, 915, 980, 1022
MboII	GAAGA	8 cut(s)	16, 75, 85, 262, 937, 990, 1009, 1046
MflI	RGATCY	1 cut(s)	980
MlsI	TGGCCA	2 cut(s)	743, 756
MluCI	AATT	7 cut(s)	149, 234, 322, 414, 447, 493, 688
MluNI	TGGCCA	2 cut(s)	743, 756
MlyI	GAGTC	1 cut(s)	1009
MnlI	CCTC	5 cut(s)	83, 116, 118, 604, 1030
Mox20I	TGGCCA	2 cut(s)	743, 756
MroI	TCCGGA	1 cut(s)	586
MscI	TGGCCA	2 cut(s)	743, 756
MseI	TTAA	2 cut(s)	111, 678
MslI	CAYNNNNRTG	2 cut(s)	708, 806
Msp20I	TGGCCA	2 cut(s)	743, 756
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	5 cut(s)	11, 58, 393, 685, 975
MvaI	CCWGG	5 cut(s)	11, 58, 393, 685, 975
MwoI	GCNNNNNNNGC	3 cut(s)	61, 803, 827
NcoI	CCATGG	4 cut(s)	245, 738, 909, 949
NdeI	CATATG	2 cut(s)	256, 748
NdeII	GATC	6 cut(s)	13, 305, 456, 915, 980, 1022
NlaIV	GGNNCC	1 cut(s)	26
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	832
NspV	TTCGAA	1 cut(s)	732
PagI	TCATGA	2 cut(s)	418, 918
PceI	AGGCCT	2 cut(s)	683, 894
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	658
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	796, 900
PleI	GAGTC	1 cut(s)	1008
PpsI	GAGTC	1 cut(s)	1008
Ppu21I	YACGTR	1 cut(s)	133
Psp6I	CCWGG	5 cut(s)	9, 56, 391, 683, 973
PspEI	GGTNACC	2 cut(s)	101, 554
PspGI	CCWGG	5 cut(s)	9, 56, 391, 683, 973
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	980
RsaI	GTAC	4 cut(s)	167, 180, 360, 716
RsaNI	GTAC	4 cut(s)	166, 179, 359, 715
RseI	CAYNNNNRTG	2 cut(s)	708, 806
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	111, 678
SatI	GCNGC	2 cut(s)	795, 899
Sau3AI	GATC	6 cut(s)	13, 305, 456, 915, 980, 1022
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	1009
ScrFI	CCNGG	5 cut(s)	11, 58, 393, 685, 975
SfaNI	GCATC	3 cut(s)	466, 532, 712
SfuI	TTCGAA	1 cut(s)	732
SmiMI	CAYNNNNRTG	2 cut(s)	708, 806
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	7 cut(s)	149, 234, 322, 414, 447, 493, 688
SseBI	AGGCCT	2 cut(s)	683, 894
SspMI	CTAG	4 cut(s)	21, 443, 533, 822
StuI	AGGCCT	2 cut(s)	683, 894
StyD4I	CCNGG	5 cut(s)	9, 56, 391, 683, 973
StyI	CCWWGG	5 cut(s)	245, 300, 738, 909, 949
TaaI	ACNGT	4 cut(s)	69, 580, 625, 675
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	732
TasI	AATT	7 cut(s)	149, 234, 322, 414, 447, 493, 688
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	2 cut(s)	111, 678
Tru9I	TTAA	2 cut(s)	111, 678
TscAI	CASTG	2 cut(s)	808, 1011
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	2 cut(s)	794, 898
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	17, 407, 435, 938
TspRI	CASTG	2 cut(s)	808, 1011
XapI	RAATTY	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 307
XspI	CTAG	4 cut(s)	21, 443, 533, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.